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Aliases for FAR1-IT1 Gene

Subcategory (RNA class) for FAR1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAR1-IT1 Gene

  • FAR1 Intronic Transcript 1 2 3 5
  • FAR1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for FAR1-IT1 Gene

Previous GeneCards Identifiers for FAR1-IT1 Gene

  • GC00U933579

Summaries for FAR1-IT1 Gene

GeneCards Summary for FAR1-IT1 Gene

FAR1-IT1 (FAR1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAR1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAR1-IT1 Gene

Genomics for FAR1-IT1 Gene

GeneHancer (GH) Regulatory Elements for FAR1-IT1 Gene

Promoters and enhancers for FAR1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I013667 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 550.8 0.0 -15 4 HDGF PKNOX1 ARNT SIN3A POLR2B ZNF143 FOS SP3 CEBPZ REST FAR1 FAR1-IT1
GH11I013697 Enhancer 1 ENCODE dbSUPER 12 +28.9 28919 0.6 HDAC1 ARNT TCF12 CREM ZBTB11 NCOA1 ZEB2 NFIC KLF16 SMARCA4 FAR1 FAR1-IT1 ENSG00000200685 GC11M013687 CENPUP1
GH11I013717 Enhancer 0.7 ENCODE dbSUPER 11.4 +48.2 48242 0.2 FOSL1 GATA3 JUND JUN FOS ZBTB40 FAR1 FAR1-IT1 ENSG00000200685 GC11M013687 CENPUP1
GH11I013704 Enhancer 0.4 dbSUPER 11.6 +36.0 35956 1.7 ZNF585B CEBPB ATF7 FAR1 FAR1-IT1 ENSG00000200685 GC11M013687 CENPUP1
GH11I013645 Enhancer 0.2 ENCODE 11.8 -24.1 -24108 0.2 FAR1 FAR1-IT1 GC11P013660 GC11P013661 PIR55989 GC11P013618
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAR1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAR1-IT1 Gene

Genomic Locations for FAR1-IT1 Gene
chr11:13,669,327-13,670,149
(GRCh38/hg38)
Size:
823 bases
Orientation:
Plus strand
chr11:13,690,874-13,691,696
(GRCh37/hg19)

Genomic View for FAR1-IT1 Gene

Genes around FAR1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAR1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAR1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for FAR1-IT1 Gene

Proteins for FAR1-IT1 Gene

Post-translational modifications for FAR1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAR1-IT1 Gene

Domains & Families for FAR1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAR1-IT1 Gene

Function for FAR1-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAR1-IT1 Gene

Localization for FAR1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAR1-IT1 Gene

Pathways & Interactions for FAR1-IT1 Gene

SuperPathways for FAR1-IT1 Gene

No Data Available

Interacting Proteins for FAR1-IT1 Gene

Gene Ontology (GO) - Biological Process for FAR1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAR1-IT1 Gene

Drugs & Compounds for FAR1-IT1 Gene

No Compound Related Data Available

Transcripts for FAR1-IT1 Gene

mRNA/cDNA for FAR1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAR1-IT1 Gene

No ASD Table

Relevant External Links for FAR1-IT1 Gene

GeneLoc Exon Structure for
FAR1-IT1
ECgene alternative splicing isoforms for
FAR1-IT1

Expression for FAR1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAR1-IT1 Gene

genes like me logo Genes that share expression patterns with FAR1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAR1-IT1 Gene

Orthologs for FAR1-IT1 Gene

Evolution for FAR1-IT1 Gene

ENSEMBL:
Gene Tree for FAR1-IT1 (if available)
TreeFam:
Gene Tree for FAR1-IT1 (if available)

No data available for Orthologs for FAR1-IT1 Gene

Paralogs for FAR1-IT1 Gene

No data available for Paralogs for FAR1-IT1 Gene

Variants for FAR1-IT1 Gene

Additional Variant Information for FAR1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAR1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAR1-IT1 Gene

Disorders for FAR1-IT1 Gene

No disorders were found for FAR1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FAR1-IT1 Gene

Publications for FAR1-IT1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

Products for FAR1-IT1 Gene

Sources for FAR1-IT1 Gene

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