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Aliases for FAR1-IT1 Gene

Subcategory (RNA class) for FAR1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for FAR1-IT1 Gene

  • FAR1 Intronic Transcript 1 2 3 5
  • FAR1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for FAR1-IT1 Gene

Previous GeneCards Identifiers for FAR1-IT1 Gene

  • GC00U933579

Summaries for FAR1-IT1 Gene

GeneCards Summary for FAR1-IT1 Gene

FAR1-IT1 (FAR1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAR1-IT1 Gene

Genomics for FAR1-IT1 Gene

Regulatory Elements for FAR1-IT1 Gene

Enhancers for FAR1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G013697 1.1 ENCODE dbSUPER 12 +28.9 28919 0.6 ARNT TCF12 GATA2 CREM ZBTB11 NCOA1 ZEB2 NFIC KLF16 SMARCA4 FAR1 FAR1-IT1 GC11M013687 ENSG00000200685 CENPUP1
GH11G013717 0.9 ENCODE dbSUPER 11.4 +48.2 48242 0.2 JUN SIN3A ZBTB40 FOSL1 JUND GATA3 GATA2 ATF3 FOS FAR1 FAR1-IT1 ENSG00000200685 GC11M013687 CENPUP1
GH11G013645 0.4 ENCODE 11.8 -24.1 -24109 0.2 BCL6B FAR1 FAR1-IT1 GC11P013660 PIR55989 GC11P013661 GC11P013618
GH11G013704 0.4 dbSUPER 11.6 +36.0 35957 1.7 ZNF585B CEBPB FAR1 FAR1-IT1 ENSG00000200685 GC11M013687 CENPUP1
GH11G013667 1.3 ENCODE dbSUPER 0.7 0.0 -16 4.0 HDGF PKNOX1 CREB3L1 ARNT AGO1 SIN3A ZNF143 FOS KLF13 SP3 FAR1 FAR1-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAR1-IT1 on UCSC Golden Path with GeneCards custom track

Promoters for FAR1-IT1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000037212 -527 2401 HDGF PKNOX1 CREB3L1 ARNT AGO1 SIN3A ZNF143 FOS KLF13 SP3

Genomic Location for FAR1-IT1 Gene

13,669,327 bp from pter
13,670,149 bp from pter
823 bases
Plus strand

Genomic View for FAR1-IT1 Gene

Genes around FAR1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAR1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAR1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for FAR1-IT1 Gene

Proteins for FAR1-IT1 Gene

Post-translational modifications for FAR1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAR1-IT1 Gene

Domains & Families for FAR1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAR1-IT1 Gene

Function for FAR1-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAR1-IT1 Gene

Localization for FAR1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAR1-IT1 Gene

Pathways & Interactions for FAR1-IT1 Gene

SuperPathways for FAR1-IT1 Gene

No Data Available

Interacting Proteins for FAR1-IT1 Gene

Gene Ontology (GO) - Biological Process for FAR1-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for FAR1-IT1 Gene

Drugs & Compounds for FAR1-IT1 Gene

No Compound Related Data Available

Transcripts for FAR1-IT1 Gene

mRNA/cDNA for FAR1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAR1-IT1 Gene

No ASD Table

Relevant External Links for FAR1-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for FAR1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAR1-IT1 Gene

genes like me logo Genes that share expression patterns with FAR1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAR1-IT1 Gene

Orthologs for FAR1-IT1 Gene

Evolution for FAR1-IT1 Gene

Gene Tree for FAR1-IT1 (if available)
Gene Tree for FAR1-IT1 (if available)

No data available for Orthologs for FAR1-IT1 Gene

Paralogs for FAR1-IT1 Gene

No data available for Paralogs for FAR1-IT1 Gene

Variants for FAR1-IT1 Gene

Relevant External Links for FAR1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAR1-IT1 Gene

Disorders for FAR1-IT1 Gene

No disorders were found for FAR1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FAR1-IT1 Gene

Publications for FAR1-IT1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 64

Products for FAR1-IT1 Gene

Sources for FAR1-IT1 Gene

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