Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FANK1-AS1 Gene

Subcategory (RNA class) for FANK1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FANK1-AS1 Gene

  • FANK1 Antisense RNA 1 2 3 5
  • FANK1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for FANK1-AS1 Gene

Previous GeneCards Identifiers for FANK1-AS1 Gene

  • GC10M127661

Summaries for FANK1-AS1 Gene

GeneCards Summary for FANK1-AS1 Gene

FANK1-AS1 (FANK1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FANK1-AS1 Gene

Genomics for FANK1-AS1 Gene

Regulatory Elements for FANK1-AS1 Gene

Enhancers for FANK1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F125053 0.9 Ensembl ENCODE 16.2 +913.0 913016 12.5 PKNOX1 SIN3A FEZF1 ZNF2 GLIS2 CBX5 KLF7 ZNF263 JUNB REST NPM1P31 TEX36-AS1 FANK1-AS1 MIR4296 CTBP2
GH10F125972 0.6 Ensembl ENCODE 0.8 -0.2 -202 1.2 ATF1 INSM2 ZNF76 KLF17 RAD21 BRCA1 ZEB1 RFX5 ZNF366 SCRT2 EDRF1-AS1 UROS FANK1 FANK1-AS1 GC10M126013
GH10F125982 0.9 Ensembl ENCODE 0.4 -9.8 -9771 1.7 CTCF ZNF654 ZNF792 TRIM22 REST ZIC2 RAD21 SMARCA4 SMC3 PRDM1 UROS FANK1 FANK1-AS1 GC10M126013
GH10F126012 1 Ensembl ENCODE 0.2 -41.3 -41331 3.7 TBL1XR1 INSM2 RAD21 SCRT2 FOS EGR2 TSHZ1 KLF16 GLIS1 KDM1A UROS FANK1 GC10M126013 FANK1-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FANK1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FANK1-AS1 Gene

Chromosome:
10
Start:
125,972,188 bp from pter
End:
125,973,273 bp from pter
Size:
1,086 bases
Orientation:
Minus strand

Genomic View for FANK1-AS1 Gene

Genes around FANK1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FANK1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FANK1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FANK1-AS1 Gene

Proteins for FANK1-AS1 Gene

Post-translational modifications for FANK1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FANK1-AS1 Gene

Domains & Families for FANK1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FANK1-AS1 Gene

Function for FANK1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FANK1-AS1 Gene

Localization for FANK1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FANK1-AS1 Gene

Pathways & Interactions for FANK1-AS1 Gene

SuperPathways for FANK1-AS1 Gene

No Data Available

Interacting Proteins for FANK1-AS1 Gene

Gene Ontology (GO) - Biological Process for FANK1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FANK1-AS1 Gene

Transcripts for FANK1-AS1 Gene

mRNA/cDNA for FANK1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FANK1-AS1 Gene

No ASD Table

Relevant External Links for FANK1-AS1 Gene

GeneLoc Exon Structure for
FANK1-AS1
ECgene alternative splicing isoforms for
FANK1-AS1

Expression for FANK1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FANK1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FANK1-AS1 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with FANK1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FANK1-AS1 Gene

Orthologs for FANK1-AS1 Gene

Evolution for FANK1-AS1 Gene

ENSEMBL:
Gene Tree for FANK1-AS1 (if available)
TreeFam:
Gene Tree for FANK1-AS1 (if available)

No data available for Orthologs for FANK1-AS1 Gene

Paralogs for FANK1-AS1 Gene

No data available for Paralogs for FANK1-AS1 Gene

Variants for FANK1-AS1 Gene

Sequence variations from dbSNP and Humsavar for FANK1-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10901491 -- 125,972,208(+) GTCAT(A/G)TAAGT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs112008872 -- 125,975,210(+) CATAG(C/T)GTATA intron-variant, upstream-variant-2KB
rs11244738 -- 125,971,782(+) ACGGC(C/T)GGCTA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs11244739 -- 125,973,288(+) TGGAT(A/G)TCTTT intron-variant, upstream-variant-2KB
rs11244740 -- 125,974,260(+) GCCCC(A/G)CTGGC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FANK1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759788 CNV gain 17122850
esv2761638 CNV loss 21179565

Relevant External Links for FANK1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FANK1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FANK1-AS1 Gene

Disorders for FANK1-AS1 Gene

Relevant External Links for FANK1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FANK1-AS1

No disorders were found for FANK1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FANK1-AS1 Gene

Publications for FANK1-AS1 Gene

No publications were found for FANK1-AS1 Gene.

Products for FANK1-AS1 Gene

Sources for FANK1-AS1 Gene

Content
Loading form....