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Aliases for FANCD2OS Gene

Aliases for FANCD2OS Gene

  • FANCD2 Opposite Strand 2 3
  • Fanconi Anemia Group D2 Protein Opposite Strand Transcript Protein 3 4
  • C3orf24 3 4
  • Chromosome 3 Open Reading Frame 24 2
  • FANCD2 Opposite Strand Protein 3

External Ids for FANCD2OS Gene

Previous HGNC Symbols for FANCD2OS Gene

  • C3orf24

Summaries for FANCD2OS Gene

Entrez Gene Summary for FANCD2OS Gene

  • This gene encodes a conserved protein of unknown function. [provided by RefSeq, Jan 2013]

GeneCards Summary for FANCD2OS Gene

FANCD2OS (FANCD2 Opposite Strand) is a Protein Coding gene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FANCD2OS Gene

Genomics for FANCD2OS Gene

Genomic Location for FANCD2OS Gene

Start:
10,081,317 bp from pter
End:
10,108,291 bp from pter
Size:
26,975 bases
Orientation:
Minus strand

Genomic View for FANCD2OS Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FANCD2OS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FANCD2OS Gene

No data available for Regulatory Elements for FANCD2OS Gene

Proteins for FANCD2OS Gene

  • Protein details for FANCD2OS Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96PS1-FACOS_HUMAN
    Recommended name:
    FANCD2 opposite strand protein
    Protein Accession:
    Q96PS1
    Secondary Accessions:

    Protein attributes for FANCD2OS Gene

    Size:
    177 amino acids
    Molecular mass:
    20188 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FANCD2OS Gene

Proteomics data for FANCD2OS Gene at MOPED

Post-translational modifications for FANCD2OS Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FANCD2OS Gene

No data available for DME Specific Peptides for FANCD2OS Gene

Domains for FANCD2OS Gene

Protein Domains for FANCD2OS Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FANCD2OS: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FANCD2OS Gene

Function for FANCD2OS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FANCD2OS Gene

Localization for FANCD2OS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FANCD2OS Gene

Pathways for FANCD2OS Gene

SuperPathways for FANCD2OS Gene

No Data Available

Interacting Proteins for FANCD2OS Gene

Gene Ontology (GO) - Biological Process for FANCD2OS Gene

None

No data available for Pathways by source for FANCD2OS Gene

Transcripts for FANCD2OS Gene

Unigene Clusters for FANCD2OS Gene

FANCD2 opposite strand:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FANCD2OS Gene

No ASD Table

Relevant External Links for FANCD2OS Gene

GeneLoc Exon Structure for
FANCD2OS
ECgene alternative splicing isoforms for
FANCD2OS

Expression for FANCD2OS Gene

mRNA expression in normal human tissues for FANCD2OS Gene

mRNA differential expression in normal tissues according to GTEx for FANCD2OS Gene

This gene is overexpressed in Testis (52.6).

SOURCE GeneReport for Unigene cluster for FANCD2OS Gene Hs.190413

genes like me logo Genes that share expressions with FANCD2OS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for FANCD2OS Gene

Orthologs for FANCD2OS Gene

This gene was present in the common ancestor of chordates.

Orthologs for FANCD2OS Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FANCD2OS 35
  • 99.81 (n)
  • 100 (a)
FANCD2OS 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FANCD2OS 35
  • 90.96 (n)
  • 96.61 (a)
FANCD2OS 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FANCD2OS 35
  • 90.02 (n)
  • 96.05 (a)
FANCD2OS 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fancd2os 35
  • 87.19 (n)
  • 92.09 (a)
Fancd2os 16
Fancd2os 36
  • 92 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FANCD2OS 36
  • 96 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FANCD2OS 36
  • 58 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fancd2os 35
  • 88.14 (n)
  • 93.22 (a)
chicken
(Gallus gallus)
Aves C3ORF24 35
  • 54.83 (n)
  • 50 (a)
FANCD2OS 36
  • 45 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 55 (a)
OneToMany
-- 36
  • 48 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia fancd2os 35
  • 60.69 (n)
  • 53.18 (a)
Species with no ortholog for FANCD2OS:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FANCD2OS Gene

ENSEMBL:
Gene Tree for FANCD2OS (if available)
TreeFam:
Gene Tree for FANCD2OS (if available)

Paralogs for FANCD2OS Gene

Selected SIMAP similar genes for FANCD2OS Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with FANCD2OS: view

No data available for Paralogs for FANCD2OS Gene

Variants for FANCD2OS Gene

Sequence variations from dbSNP and Humsavar for FANCD2OS Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs2619498 -- 10,102,688(+) aatac(A/C)aaaaa intron-variant
rs2687883 -- 10,104,540(+) GCGCA(A/T)CTCTG missense, reference, nc-transcript-variant
rs6768102 -- 10,107,696(+) CAATC(A/G)CAGCA intron-variant
rs6771697 -- 10,108,911(+) TTCCC(A/G)GCTCA upstream-variant-2KB
rs7618815 -- 10,109,361(+) GGAAG(A/G)AGAGG upstream-variant-2KB

Relevant External Links for FANCD2OS Gene

HapMap Linkage Disequilibrium report
FANCD2OS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FANCD2OS Gene

Disorders for FANCD2OS Gene

No disorders were found for FANCD2OS Gene.

No data available for UniProtKB/Swiss-Prot for FANCD2OS Gene

Publications for FANCD2OS Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  4. Overrepresentation of glutamate signaling in Alzheimer's disease: network-based pathway enrichment using meta-analysis of genome-wide association studies. (PMID: 24755620) PAcrez-Palma E. … . (PLoS ONE 2014) 3
  5. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4

Products for FANCD2OS Gene

Sources for FANCD2OS Gene

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