Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FAM9A Gene

Aliases for FAM9A Gene

  • Family With Sequence Similarity 9, Member A 2 3
  • Testis Expressed 39A 2 3
  • Protein FAM9A 3
  • TEX39A 3

External Ids for FAM9A Gene

Summaries for FAM9A Gene

Entrez Gene Summary for FAM9A Gene

  • This gene is a member of a gene family which arose through duplication on the X chromosome. The encoded protein may be a nuclear protein that is localized to the nucleolus, and has some similarity to a synaptonemal complex protein. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Aug 2011]

GeneCards Summary for FAM9A Gene

FAM9A (Family With Sequence Similarity 9, Member A) is a Protein Coding gene. Diseases associated with FAM9A include uterine fibroid. An important paralog of this gene is FAM9C.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM9A Gene

Genomics for FAM9A Gene

Genomic Location for FAM9A Gene

Start:
8,790,795 bp from pter
End:
8,801,383 bp from pter
Size:
10,589 bases
Orientation:
Minus strand

Genomic View for FAM9A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM9A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM9A Gene

Regulatory Elements for FAM9A Gene

Transcription factor binding sites by QIAGEN in the FAM9A gene promoter:

Proteins for FAM9A Gene

  • Protein details for FAM9A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IZU1-FAM9A_HUMAN
    Recommended name:
    Protein FAM9A
    Protein Accession:
    Q8IZU1
    Secondary Accessions:
    • B7ZLH5
    • Q2M2D1

    Protein attributes for FAM9A Gene

    Size:
    332 amino acids
    Molecular mass:
    37339 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM9A Gene

Proteomics data for FAM9A Gene at MOPED

Post-translational modifications for FAM9A Gene

No Post-translational modifications

Other Protein References for FAM9A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM9A Gene

Domains for FAM9A Gene

Protein Domains for FAM9A Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

FAM9A_HUMAN
Family:
  • Belongs to the FAM9 family.:
    • Q8IZU1
genes like me logo Genes that share domains with FAM9A: view

No data available for Gene Families for FAM9A Gene

Function for FAM9A Gene

Gene Ontology (GO) - Molecular Function for FAM9A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 23455924
genes like me logo Genes that share ontologies with FAM9A: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM9A Gene

Localization for FAM9A Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM9A Gene

Nucleus, nucleolus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM9A Gene COMPARTMENTS Subcellular localization image for FAM9A gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for FAM9A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA --
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with FAM9A: view

Pathways for FAM9A Gene

SuperPathways for FAM9A Gene

No Data Available

Interacting Proteins for FAM9A Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000370391%0d%0a9606.ENSP00000403397%0d%0a
Selected Interacting proteins: ENSP00000370391 Q8IZU1-FAM9A_HUMAN for FAM9A Gene via STRING UniProtKB

Gene Ontology (GO) - Biological Process for FAM9A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007286 spermatid development IBA --
genes like me logo Genes that share ontologies with FAM9A: view

No data available for Pathways by source for FAM9A Gene

Transcripts for FAM9A Gene

mRNA/cDNA for FAM9A Gene

(3) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM9A Gene

Family with sequence similarity 9, member A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM9A Gene

No ASD Table

Relevant External Links for FAM9A Gene

GeneLoc Exon Structure for
FAM9A
ECgene alternative splicing isoforms for
FAM9A

Expression for FAM9A Gene

mRNA expression in normal human tissues for FAM9A Gene

mRNA differential expression in normal tissues according to GTEx for FAM9A Gene

This gene is overexpressed in Testis (43.5) and Liver (4.6).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for FAM9A Gene

SOURCE GeneReport for Unigene cluster for FAM9A Gene Hs.382062

mRNA Expression by UniProt/SwissProt for FAM9A Gene

Q8IZU1-FAM9A_HUMAN
Tissue specificity: Expressed exclusively in testis.
genes like me logo Genes that share expressions with FAM9A: view

Orthologs for FAM9A Gene

Evolution for FAM9A Gene

ENSEMBL:
Gene Tree for FAM9A (if available)
TreeFam:
Gene Tree for FAM9A (if available)

No data available for Orthologs for FAM9A Gene

Paralogs for FAM9A Gene

Paralogs for FAM9A Gene

Selected SIMAP similar genes for FAM9A Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for FAM9A Gene

genes like me logo Genes that share paralogs with FAM9A: view

Variants for FAM9A Gene

Sequence variations from dbSNP and Humsavar for FAM9A Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs1985393 -- 8,796,279(+) AGTTG(G/T)TTTTT reference, missense
rs2018496 -- 8,798,250(+) AGATA(C/T)GTCTT intron-variant
rs2020413 -- 8,799,444(+) CTGGG(A/G)GAATG intron-variant
rs2020414 -- 8,799,416(+) GGGTG(C/T)CACAG intron-variant
rs2020415 -- 8,799,360(+) CAGAG(C/T)TCAGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM9A Gene

Variant ID Type Subtype PubMed ID
esv2752339 CNV Gain 17911159

Relevant External Links for FAM9A Gene

HapMap Linkage Disequilibrium report
FAM9A
Locus Specific Mutation Databases (LSDB)
FAM9A

Disorders for FAM9A Gene

(1) MalaCards Diseases for FAM9A Gene

Search for FAM9A Gene in MalaCards »

(1) University of Copenhagen DISEASES for FAM9A Gene

genes like me logo Genes that share disorders with FAM9A: view

No data available for UniProtKB/Swiss-Prot for FAM9A Gene

Publications for FAM9A Gene

  1. A new gene family (FAM9) of low-copy repeats in Xp22.3 expressed exclusively in testis: implications for recombinations in this region. (PMID: 12213195) Martinez-Garay I. … Kutsche K. (Genomics 2002) 3 4 23
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. A Y2H-seq approach defines the human protein methyltransferase interactome. (PMID: 23455924) Weimann M. … Stelzl U. (Nat. Methods 2013) 3
  4. The palmitoyl acyltransferase HIP14 shares a high proportion of interactors with huntingtin: implications for a role in the pathogenesis of Huntington's disease. (PMID: 24705354) Butland S.L. … Hayden M.R. (Hum. Mol. Genet. 2014) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for FAM9A Gene

Sources for FAM9A Gene

Back to Top

Content