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FAM99B Gene(RNA Gene)

Family With Sequence Similarity 99 Member B (Non-Protein Coding)

GCID:
GC11M001684
GIFtS:
20
Genes Participants
UDN Logo

Aliases for FAM99B Gene

Subcategory (RNA class) for FAM99B Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM99B Gene

  • Family With Sequence Similarity 99 Member B (Non-Protein Coding) 2 3 5
  • Family With Sequence Similarity 99, Member B (Non-Protein Coding) 2
  • Family With Sequence Similarity 99, Member B 2

External Ids for FAM99B Gene

Previous GeneCards Identifiers for FAM99B Gene

  • GC00U921691
  • GC11U900702
  • GC11M001662
  • GC11M001704
  • GC11M001496

Summaries for FAM99B Gene

GeneCards Summary for FAM99B Gene

FAM99B (Family With Sequence Similarity 99 Member B (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM99B Gene

Genomics for FAM99B Gene

Products:

  1. Regulatory Element

Regulatory Elements for FAM99B Gene

Enhancers for FAM99B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G001770 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11 -86.3 -86320 3.8 HDGF PKNOX1 ATF1 CREB3L1 ARNT SIN3A ZBTB7B GATA2 FOS KLF13 IFITM10 TNNI2 ENSG00000255142 SYT8 KRTAP5-6 LOC100505570 FAM99B LSP1 ENSG00000235027 TOLLIP
GH11G002139 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -460.5 -460511 13.0 PKNOX1 ZNF48 GLIS2 ZNF143 FOS MXD4 JUNB REST SREBF1 ZNF579 ENSG00000199550 CD81 LSP1 KRTAP5-6 FAM99B LOC100505570 KRTAP5-5 IGF2 TH TNNT3
GH11G001977 1.3 ENCODE dbSUPER 11 -295.4 -295403 7.5 PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B DMAP1 ZNF263 SP5 ZHX2 MRPL23-AS1 LSP1 FAM99B KRTAP5-6 LOC100505570 GC11P001973 GC11P001986
GH11G001768 1 ENCODE dbSUPER 11 -83.4 -83382 0.9 TFAP4 NFIB E2F1 GATA3 EGR1 FOS MAFK ZNF687 RNF2 NR4A1 SYT8 TNNI2 KRTAP5-6 FAM99B LOC100505570 CTSD LOC105376517
GH11G001810 0.9 Ensembl 11.2 -125.4 -125372 0.8 AGO1 KLF17 ARID4B ZSCAN9 ZNF48 RAD21 ZNF335 GLIS2 ZNF143 THAP11 TNNI2 CTSD ENSG00000250644 ENSG00000229512 ENSG00000235027 IFITM10 MRPL23-AS1 LINC01219 H19 KRTAP5-6
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM99B on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the FAM99B gene promoter:

Genomic Location for FAM99B Gene

Chromosome:
11
Start:
1,683,269 bp from pter
End:
1,685,629 bp from pter
Size:
2,361 bases
Orientation:
Minus strand

Genomic View for FAM99B Gene

Genes around FAM99B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM99B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM99B Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAM99B Gene

Proteins for FAM99B Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for FAM99B Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM99B Gene

Domains & Families for FAM99B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM99B Gene

Function for FAM99B Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM99B Gene

Localization for FAM99B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM99B Gene

Pathways & Interactions for FAM99B Gene

SuperPathways for FAM99B Gene

PathCards logo More details on SuperPathways for FAM99B
No Data Available

Interacting Proteins for FAM99B Gene

Gene Ontology (GO) - Biological Process for FAM99B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM99B Gene

Drugs & Compounds for FAM99B Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAM99B Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FAM99B Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM99B Gene

Family with sequence similarity 99, member B (non-protein coding):
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM99B Gene

No ASD Table

Relevant External Links for FAM99B Gene

GeneLoc Exon Structure for
FAM99B
ECgene alternative splicing isoforms for
FAM99B

Expression for FAM99B Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM99B Gene

mRNA expression in normal human tissues for FAM99B Gene
mRNA expression by GTEx for FAM99B Gene

mRNA differential expression in normal tissues according to GTEx for FAM99B Gene

This gene is overexpressed in Liver (x49.5).

NURSA nuclear receptor signaling pathways regulating expression of FAM99B Gene:

FAM99B

SOURCE GeneReport for Unigene cluster for FAM99B Gene:

Hs.117797
genes like me logo Genes that share expression patterns with FAM99B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM99B Gene

Orthologs for FAM99B Gene

Evolution for FAM99B Gene

ENSEMBL:
Gene Tree for FAM99B (if available)
TreeFam:
Gene Tree for FAM99B (if available)

No data available for Orthologs for FAM99B Gene

Paralogs for FAM99B Gene

No data available for Paralogs for FAM99B Gene

Variants for FAM99B Gene

Sequence variations from dbSNP and Humsavar for FAM99B Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000432789 -- 1,685,323(+) GATGG(A/G)AATCT intron-variant
rs1000612127 -- 1,684,959(+) GAGGG(A/C)AGGGG intron-variant
rs1000682290 -- 1,686,273(+) CAAAC(A/T)CCTCA upstream-variant-2KB
rs1000742030 -- 1,685,474(+) CTCTT(C/G)CCAGC nc-transcript-variant
rs1001284559 -- 1,683,727(+) CCAAA(A/T)GTTTT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM99B Gene

Variant ID Type Subtype PubMed ID
esv1323796 CNV deletion 17803354
esv2743958 CNV deletion 23290073
esv2743959 CNV deletion 23290073
esv2761643 CNV gain 21179565
esv7747 OTHER inversion 19470904
nsv1051627 CNV gain 25217958
nsv1116454 OTHER inversion 24896259
nsv435977 OTHER inversion 17901297
nsv552999 CNV gain 21841781
nsv832049 CNV loss 17160897

Relevant External Links for FAM99B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM99B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM99B Gene

Disorders for FAM99B Gene

Relevant External Links for FAM99B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM99B

No disorders were found for FAM99B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM99B Gene

Publications for FAM99B Gene

No publications were found for FAM99B Gene.

Products for FAM99B Gene

Sources for FAM99B Gene

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