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Aliases for FAM99B Gene

Subcategory (RNA class) for FAM99B Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM99B Gene

  • Family With Sequence Similarity 99 Member B (Non-Protein Coding) 2 3 5
  • Family With Sequence Similarity 99, Member B (Non-Protein Coding) 2
  • Family With Sequence Similarity 99, Member B 2

External Ids for FAM99B Gene

Previous GeneCards Identifiers for FAM99B Gene

  • GC00U921691
  • GC11U900702
  • GC11M001662
  • GC11M001704
  • GC11M001496

Summaries for FAM99B Gene

GeneCards Summary for FAM99B Gene

FAM99B (Family With Sequence Similarity 99 Member B (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM99B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM99B Gene

Genomics for FAM99B Gene

Regulatory Elements for FAM99B Gene

Enhancers for FAM99B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H001770 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11 -86.3 -86320 3.8 HDGF PKNOX1 ATF1 ARNT SIN3A ZBTB7B GATA2 FOS ATF7 MCM3 TSPAN4 SNORA52 PIDD1 IFITM10 TNNI2 ENSG00000255142 SYT8 KRTAP5-6 LOC100505570 FAM99B
GH11H002139 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -460.5 -460511 13 ELF3 RB1 BATF RAD21 ZEB1 GLIS2 SCRT2 ZNF143 FOS RUNX3 TSSC4 ENSG00000199550 CD81 LSP1 LOC100505570 KRTAP5-6 FAM99B KRTAP5-5 IGF2 TH
GH11H001977 1.3 ENCODE dbSUPER 11 -295.4 -295403 7.5 PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B DMAP1 SP5 ZHX2 MXD4 MRPL23-AS1 TSSC4 LSP1 KRTAP5-6 FAM99B LOC100505570 GC11P001986 GC11P001973
GH11H001768 1 ENCODE dbSUPER 11 -83.4 -83382 0.9 TFAP4 ZNF687 NFIB NR4A1 ZNF592 E2F1 NFIC GATA3 MAFF ZNF318 SYT8 TNNI2 KRTAP5-6 FAM99B LOC100505570 CTSD LOC105376517
GH11H001771 0.9 ENCODE dbSUPER 11 -84.3 -84261 0.1 ZFP64 ZC3H11A ZNF140 ZNF623 ZNF697 ZNF555 GLI2 PRDM12 ZNF433 PIDD1 SYT8 TNNI2 KRTAP5-6 FAM99B LOC100505570 RPL26P30 ENSG00000255142 KCNQ1OT1 CTSD
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM99B on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM99B Gene

Genomic Locations for FAM99B Gene
chr11:1,683,269-1,685,629
(GRCh38/hg38)
Size:
2,361 bases
Orientation:
Minus strand
chr11:1,704,499-1,706,859
(GRCh37/hg19)

Genomic View for FAM99B Gene

Genes around FAM99B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM99B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM99B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM99B Gene

Proteins for FAM99B Gene

Post-translational modifications for FAM99B Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM99B Gene

Domains & Families for FAM99B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM99B Gene

Function for FAM99B Gene

Phenotypes From GWAS Catalog for FAM99B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM99B Gene

Localization for FAM99B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM99B Gene

Pathways & Interactions for FAM99B Gene

SuperPathways for FAM99B Gene

No Data Available

Interacting Proteins for FAM99B Gene

Gene Ontology (GO) - Biological Process for FAM99B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM99B Gene

Drugs & Compounds for FAM99B Gene

No Compound Related Data Available

Transcripts for FAM99B Gene

mRNA/cDNA for FAM99B Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM99B Gene

Family with sequence similarity 99, member B (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM99B Gene

No ASD Table

Relevant External Links for FAM99B Gene

GeneLoc Exon Structure for
FAM99B
ECgene alternative splicing isoforms for
FAM99B

Expression for FAM99B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM99B Gene

mRNA differential expression in normal tissues according to GTEx for FAM99B Gene

This gene is overexpressed in Liver (x49.5).

NURSA nuclear receptor signaling pathways regulating expression of FAM99B Gene:

FAM99B

SOURCE GeneReport for Unigene cluster for FAM99B Gene:

Hs.117797
genes like me logo Genes that share expression patterns with FAM99B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM99B Gene

Orthologs for FAM99B Gene

Evolution for FAM99B Gene

ENSEMBL:
Gene Tree for FAM99B (if available)
TreeFam:
Gene Tree for FAM99B (if available)

No data available for Orthologs for FAM99B Gene

Paralogs for FAM99B Gene

No data available for Paralogs for FAM99B Gene

Variants for FAM99B Gene

Sequence variations from dbSNP and Humsavar for FAM99B Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000432789 -- 1,685,323(+) GATGG(A/G)AATCT intron-variant
rs1000612127 -- 1,684,959(+) GAGGG(A/C)AGGGG intron-variant
rs1000682290 -- 1,686,273(+) CAAAC(A/T)CCTCA upstream-variant-2KB
rs1000742030 -- 1,685,474(+) CTCTT(C/G)CCAGC nc-transcript-variant
rs1001284559 -- 1,683,727(+) CCAAA(A/T)GTTTT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM99B Gene

Variant ID Type Subtype PubMed ID
nsv832049 CNV loss 17160897
nsv552999 CNV gain 21841781
nsv435977 OTHER inversion 17901297
nsv1116454 OTHER inversion 24896259
nsv1051627 CNV gain 25217958
esv7747 OTHER inversion 19470904
esv2761643 CNV gain 21179565
esv2743959 CNV deletion 23290073
esv2743958 CNV deletion 23290073
esv1323796 CNV deletion 17803354

Relevant External Links for FAM99B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM99B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM99B Gene

Disorders for FAM99B Gene

Relevant External Links for FAM99B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM99B

No disorders were found for FAM99B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM99B Gene

Publications for FAM99B Gene

No publications were found for FAM99B Gene.

Products for FAM99B Gene

Sources for FAM99B Gene

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