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FAM99A Gene(RNA Gene)

Family With Sequence Similarity 99 Member A (Non-Protein Coding)

GCID:
GC11P001666
GIFtS:
24
Genes Participants
UDN Logo

Aliases for FAM99A Gene

Subcategory (RNA class) for FAM99A Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for FAM99A Gene

  • Family With Sequence Similarity 99 Member A (Non-Protein Coding) 2 3 5
  • Family With Sequence Similarity 99, Member A (Non-Protein Coding) 2
  • Family With Sequence Similarity 99, Member A 2

External Ids for FAM99A Gene

Previous GeneCards Identifiers for FAM99A Gene

  • GC11P001642
  • GC11P001468

Summaries for FAM99A Gene

GeneCards Summary for FAM99A Gene

FAM99A (Family With Sequence Similarity 99 Member A (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM99A Gene

Genomics for FAM99A Gene

Products:

  1. Regulatory Element

Regulatory Elements for FAM99A Gene

Enhancers for FAM99A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G001653 0.9 ENCODE 11.6 -12.5 -12482 0.2 ELF3 ATF1 ARID4B ZNF48 ZSCAN9 RAD21 KAT2B ZNF143 CREM KLF11 FAM99A GC11P001645 ENSG00000231487
GH11G001654 0.9 ENCODE 8.3 -10.6 -10561 1.5 FOXA2 MLX ARID4B ZNF48 YY1 PAF1 SP5 PPARG KAT8 NFIL3 FAM99A KRTAP5-AS1 FAM99B ENSG00000231487 GC11P001645
GH11G001669 1 ENCODE 7.1 +4.7 4747 1.5 FOXA2 ATF1 MLX ARID4B DMAP1 ZNF48 YY1 SLC30A9 PAF1 SP5 KRTAP5-5 LSP1 IFITM10 FAM99A GC11P001673
GH11G001680 0.9 ENCODE 7.4 +16.5 16509 2.6 ELF3 FOXA2 ATF1 MLX ARID4B DNMT3B ZSCAN9 RARA YY1 GATA4 FAM99A FAM99B LOC100505570 ASCL2 GC11M001664
GH11G001652 0.9 ENCODE 6.9 -12.7 -12722 0.2 FOXA2 ATF1 MLX ARID4B ZNF48 ZNF143 REST MIER2 KAT8 NFIL3 FAM99A KRTAP5-AS1 GC11P001645 ENSG00000231487
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM99A on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the FAM99A gene promoter:

Genomic Location for FAM99A Gene

Chromosome:
11
Start:
1,665,597 bp from pter
End:
1,667,856 bp from pter
Size:
2,260 bases
Orientation:
Plus strand

Genomic View for FAM99A Gene

Genes around FAM99A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM99A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM99A Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAM99A Gene

Proteins for FAM99A Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for FAM99A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM99A Gene

Domains & Families for FAM99A Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM99A Gene

Function for FAM99A Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for FAM99A Gene

GenomeRNAi human phenotypes for FAM99A:
genes like me logo Genes that share phenotypes with FAM99A: view

miRNA for FAM99A Gene

miRTarBase miRNAs that target FAM99A

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM99A Gene

Localization for FAM99A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM99A Gene

Pathways & Interactions for FAM99A Gene

SuperPathways for FAM99A Gene

PathCards logo More details on SuperPathways for FAM99A
No Data Available

Interacting Proteins for FAM99A Gene

Gene Ontology (GO) - Biological Process for FAM99A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM99A Gene

Drugs & Compounds for FAM99A Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAM99A Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FAM99A Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM99A Gene

Family with sequence similarity 99, member A (non-protein coding):
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM99A Gene

No ASD Table

Relevant External Links for FAM99A Gene

GeneLoc Exon Structure for
FAM99A
ECgene alternative splicing isoforms for
FAM99A

Expression for FAM99A Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM99A Gene

mRNA expression in normal human tissues for FAM99A Gene
mRNA expression by GTEx for FAM99A Gene

mRNA differential expression in normal tissues according to GTEx for FAM99A Gene

This gene is overexpressed in Liver (x52.6).

NURSA nuclear receptor signaling pathways regulating expression of FAM99A Gene:

FAM99A

SOURCE GeneReport for Unigene cluster for FAM99A Gene:

Hs.567908
genes like me logo Genes that share expression patterns with FAM99A: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM99A Gene

Orthologs for FAM99A Gene

Evolution for FAM99A Gene

ENSEMBL:
Gene Tree for FAM99A (if available)
TreeFam:
Gene Tree for FAM99A (if available)

No data available for Orthologs for FAM99A Gene

Paralogs for FAM99A Gene

No data available for Paralogs for FAM99A Gene

Variants for FAM99A Gene

Sequence variations from dbSNP and Humsavar for FAM99A Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000290899 -- 1,665,477(+) TGACA(C/T)GTGGA upstream-variant-2KB
rs1001373406 -- 1,664,239(+) ACAGC(C/T)TCGTG upstream-variant-2KB
rs1001865666 -- 1,663,959(+) CCCCT(C/T)TGACC upstream-variant-2KB
rs1003266815 -- 1,667,358(+) GTAGG(C/G)AGCGG nc-transcript-variant
rs1005315171 -- 1,667,170(+) AACAC(C/T)GAGGG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM99A Gene

Variant ID Type Subtype PubMed ID
esv2761643 CNV gain 21179565
esv7747 OTHER inversion 19470904
nsv1051627 CNV gain 25217958
nsv1116454 OTHER inversion 24896259
nsv552999 CNV gain 21841781

Relevant External Links for FAM99A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM99A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM99A Gene

Disorders for FAM99A Gene

Relevant External Links for FAM99A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM99A

No disorders were found for FAM99A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM99A Gene

Publications for FAM99A Gene

No publications were found for FAM99A Gene.

Products for FAM99A Gene

Sources for FAM99A Gene

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