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Aliases for FAM92A1 Gene

Aliases for FAM92A1 Gene

  • Family With Sequence Similarity 92, Member A1 2 3

External Ids for FAM92A1 Gene

Summaries for FAM92A1 Gene

GeneCards Summary for FAM92A1 Gene

FAM92A1 (Family With Sequence Similarity 92, Member A1) is a Protein Coding gene. An important paralog of this gene is FAM92B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM92A1 Gene

Genomics for FAM92A1 Gene

Genomic Location for FAM92A1 Gene

Start:
93,698,561 bp from pter
End:
93,731,527 bp from pter
Size:
32,967 bases
Orientation:
Plus strand

Genomic View for FAM92A1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM92A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM92A1 Gene

Regulatory Elements for FAM92A1 Gene

Proteins for FAM92A1 Gene

  • Protein details for FAM92A1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A1XBS5-F92A1_HUMAN
    Recommended name:
    Protein FAM92A1
    Protein Accession:
    A1XBS5
    Secondary Accessions:
    • A1XBS4
    • Q32ND3
    • Q6AHW7
    • Q8N8R1
    • Q96L09

    Protein attributes for FAM92A1 Gene

    Size:
    289 amino acids
    Molecular mass:
    33431 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH14598.2; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAI08708.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for FAM92A1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FAM92A1 Gene

Proteomics data for FAM92A1 Gene at MOPED

Post-translational modifications for FAM92A1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAM92A1 Gene

Domains for FAM92A1 Gene

Protein Domains for FAM92A1 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

F92A1_HUMAN
Family:
  • Belongs to the FAM92 family.:
    • A1XBS5
genes like me logo Genes that share domains with FAM92A1: view

No data available for Gene Families for FAM92A1 Gene

Function for FAM92A1 Gene

Gene Ontology (GO) - Molecular Function for FAM92A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with FAM92A1: view

Phenotypes for FAM92A1 Gene

GenomeRNAi human phenotypes for FAM92A1:
genes like me logo Genes that share phenotypes with FAM92A1: view

miRNA for FAM92A1 Gene

miRTarBase miRNAs that target FAM92A1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for FAM92A1 Gene

Localization for FAM92A1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM92A1 Gene COMPARTMENTS Subcellular localization image for FAM92A1 gene
Compartment Confidence
mitochondrion 2
nucleus 2
cytosol 1
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for FAM92A1 Gene

Pathways for FAM92A1 Gene

SuperPathways for FAM92A1 Gene

No Data Available

Interacting Proteins for FAM92A1 Gene

Gene Ontology (GO) - Biological Process for FAM92A1 Gene

None

No data available for Pathways by source for FAM92A1 Gene

Transcripts for FAM92A1 Gene

Unigene Clusters for FAM92A1 Gene

Family with sequence similarity 92, member A1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM92A1 Gene

No ASD Table

Relevant External Links for FAM92A1 Gene

GeneLoc Exon Structure for
FAM92A1
ECgene alternative splicing isoforms for
FAM92A1

Expression for FAM92A1 Gene

mRNA expression in normal human tissues for FAM92A1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FAM92A1 Gene

This gene is overexpressed in Testis (5.6).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for FAM92A1 Gene

SOURCE GeneReport for Unigene cluster for FAM92A1 Gene Hs.125038

genes like me logo Genes that share expressions with FAM92A1: view

Orthologs for FAM92A1 Gene

This gene was present in the common ancestor of animals.

Orthologs for FAM92A1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM92A1 36
  • 99.77 (n)
  • 99.65 (a)
FAM92A1 37
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM92A1 36
  • 90 (n)
  • 91.11 (a)
FAM92A1 37
  • 88 (a)
OneToMany
FAM92A1 37
  • 83 (a)
OneToMany
dog
(Canis familiaris)
Mammalia FAM92A1 37
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam92a 36
  • 86.91 (n)
  • 88.52 (a)
Fam92a 16
Fam92a 37
  • 70 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 85 (a)
OneToMany
-- 37
  • 82 (a)
OneToMany
-- 37
  • 82 (a)
OneToMany
-- 37
  • 83 (a)
OneToMany
-- 37
  • 88 (a)
OneToMany
-- 37
  • 82 (a)
OneToMany
-- 37
  • 82 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia FAM92A1 37
  • 76 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fam92a1 36
  • 87.65 (n)
  • 86.67 (a)
chicken
(Gallus gallus)
Aves FAM92A1 36
  • 77.53 (n)
  • 79.26 (a)
FAM92A1 37
  • 73 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FAM92A1 37
  • 74 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.11471 36
tropical clawed frog
(Silurana tropicalis)
Amphibia fam92a1 36
  • 71.95 (n)
  • 76.55 (a)
Str.4426 36
zebrafish
(Danio rerio)
Actinopterygii fam92a1 36
  • 67.16 (n)
  • 68.89 (a)
fam92a1 37
  • 63 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009881 36
  • 42.67 (n)
  • 37.5 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG6405 36
  • 44.75 (n)
  • 34.7 (a)
CG6405 37
  • 22 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.11121 37
  • 37 (a)
OneToMany
Species with no ortholog for FAM92A1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM92A1 Gene

ENSEMBL:
Gene Tree for FAM92A1 (if available)
TreeFam:
Gene Tree for FAM92A1 (if available)

Paralogs for FAM92A1 Gene

Paralogs for FAM92A1 Gene

Pseudogenes.org Pseudogenes for FAM92A1 Gene

genes like me logo Genes that share paralogs with FAM92A1: view

Variants for FAM92A1 Gene

Sequence variations from dbSNP and Humsavar for FAM92A1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs1051914 -- 93,728,838(+) TCAAT(A/G)TTTTA utr-variant-3-prime, nc-transcript-variant
rs2914940 -- 93,719,598(-) TCAGA(A/G)TCCTG intron-variant
rs2914941 -- 93,716,983(-) TAACA(C/G)TAAAG intron-variant
rs2914942 -- 93,714,189(-) GAAGT(A/T)TAACA intron-variant
rs2914943 -- 93,712,106(-) GCCCA(A/G)TGTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM92A1 Gene

Variant ID Type Subtype PubMed ID
nsv528872 CNV Loss 19592680
dgv7834n71 CNV Loss 21882294
nsv831399 CNV Loss 17160897

Relevant External Links for FAM92A1 Gene

HapMap Linkage Disequilibrium report
FAM92A1

Disorders for FAM92A1 Gene

(1) University of Copenhagen DISEASES for FAM92A1 Gene

Relevant External Links for FAM92A1

Genetic Association Database (GAD)
FAM92A1
genes like me logo Genes that share disorders with FAM92A1: view

No data available for UniProtKB/Swiss-Prot for FAM92A1 Gene

Publications for FAM92A1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Identification and characterization of two novel variants of the DUF1208 protein FAM92A1. (PMID: 17646714) Ruan X.Z. … Wei Y.Q. (Mol. Cells 2007) 3
  4. Prokaryotic expression, purification of a new tumor-relative protein FAM92A1-289 and its characterization in renal cell carcinoma. (PMID: 19059705) Liang S. … Wei Y. (Cancer Lett. 2009) 3
  5. An empirical framework for binary interactome mapping. (PMID: 19060904) Venkatesan K. … Vidal M. (Nat. Methods 2009) 3

Products for FAM92A1 Gene

Sources for FAM92A1 Gene

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