FAM90A5P Gene
pseudogene GIFtS: 23
GCID: GC08P007144
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family with sequence similarity 90, member A5, pseudogene(Previous names: family with sequence similarity 90, member A5 )
(Previous symbol: FAM90A5)
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Aliases
for FAM90A5P gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
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| Aliases |
|---|
| Family With Sequence Similarity 90, Member A5, Pseudogene1 | | FAM90A51 2 3 5 | | Family With Sequence Similarity 90, Member A51 | | Putative Protein FAM90A52 |
Export aliases for FAM90A5P gene to outside databases |
Summaries
for FAM90A5P gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for FAM90A5P:
FAM90A5 belongs to subfamily II of the primate-specific FAM90A gene family, which originated from multiple duplicationsand rearrangements (Bosch et al., 2007 (PubMed 17684299)). For background information on the FAM90A gene family, aswell as information on the evolution of FAM90A genes, see FAM90A1 (MIM 613041).(supplied by OMIM, May 2010)
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Genomic Views
for FAM90A5P gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for FAM90A5P
Other transcription factors
Search SABiosciences Chromatin IP Primers for FAM90A5P
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FAM90A5P |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 8p23.1 Ensembl cytogenetic band: 8p23.1 HGNC cytogenetic band: 8p23.1FAM90A5P Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 8 GeneLoc Exon Structure GeneLoc location for GC08P007144: view genomic region
(about GC identifiers)
Start:
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7,144,914 bp from pter |
End:
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7,148,476 bp from pter |
Size:
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3,563 bases |
Orientation:
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plus strand |
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Proteins
for FAM90A5P gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: F90A5_HUMAN, A8MXJ8 (See
protein sequence)Recommended Name: Putative protein FAM90A5P Size: 464 amino acids; 49840 Da
Caution: Could be the product of a pseudogeneExplore the universe of human proteins at neXtProt for FAM90A5P: NX_A8MXJ8
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_A8MXJ8
FAM90A5P Protein expression data from MOPED and PaxDb: About this image 
Human Recombinant Protein Products:
FAM90A5P Antibody Products:
Assay Products for FAM90A5P: |
Protein
Domains /
Families
for FAM90A5P gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
FAM90A5P for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry A8MXJ8ProtoNet protein and cluster: A8MXJ8 UniProtKB/Swiss-Prot: F90A5_HUMAN, A8MXJ8Similarity: Belongs to the FAM90 family |
Function
for FAM90A5P gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FAM90A5P
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FAM90A5P
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript Custom all cDNA clones Services for FAM90A5P | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FAM90A5P | |  | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat FAM90A5P |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM90A5P |
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
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| GO:0003676 | nucleic acid binding |
IEA | -- | | GO:0008270 | zinc ion binding |
IEA | -- |
FAM90A5P for ontologies About GeneDecksing
|
Pathways & Interactions
for FAM90A5P gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FAM90A5P
|
Drugs & Compounds
for FAM90A5P gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for FAM90A5P
Search CenterWatch for drugs/clinical trials and news about FAM90A5P
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Transcripts
for FAM90A5P gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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REFSEQ mRNAs for FAM90A5P gene: NM_001164455.1 2 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000528738(uc022arc.1) ENST00000400158
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FAM90A5P
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FAM90A5P
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript Custom all cDNA clones Services for FAM90A5P | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FAM90A5P | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat FAM90A5P |
GeneLoc Exon Structure
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Expression
for FAM90A5P gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --
See FAM90A5P Protein Expression from SPIRE MOPED and PaxDB SABiosciences Custom PCR Arrays for FAM90A5P
Primer
Products: | | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat FAM90A5P | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FAM90A5P | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FAM90A5P | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM90A5P |
Orthologs
for FAM90A5P gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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--
ENSEMBL Gene Tree for FAM90A5P (if available)
TreeFam Gene Tree for FAM90A5P (if available) |
Paralogs
for FAM90A5P gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for FAM90A5P gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
| | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for FAM90A5P gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
 FAM90A5P for disorders About MalaCards
FAM90A5P for disorders About GeneDecksing
OMIM gene information: 613043
OMIM disorders: --
Export disorders for FAM90A5P gene to outside databases
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Publications
for FAM90A5P gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed articles for FAM90A5P gene integrated from 9 sources:
(articles sorted by number of sources associating them with FAM90A5P) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Analysis of the multi-copy gene family FAM90A as a co py number variant in different ethnic backgrounds. (PubMed id 18602769)1 Bosch N....Estivill X. (2008)
- Characterization and evolution of the novel gene fami ly FAM90A in primates originated by multiple duplication and rearrangement even ts. (PubMed id 17684299)1 Bosch N....Estivill X. (2007)
- DNA sequence and analysis of human chromosome 8. (PubMed id 16421571)2 Nusbaum C....Lander E.S. (2006)
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External Searches for FAM90A5P gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing FAM90A5P gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
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Other Databases showing FAM90A5P gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing FAM90A5P gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for FAM90A5P | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for FAM90A5P gene:
Search GeneIP for patents involving FAM90A5P
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for FAM90A5P gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat FAM90A5P | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FAM90A5P | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FAM90A5P | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat FAM90A5P | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FAM90A5P | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FAM90A5P |
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 | | | FAM90A5P Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM90A5P |
|  |  |  | | | | Search ThermoFisher Antibodies for FAM90A5P |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat FAM90A5P |
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