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FAM90A2P Gene(Pseudogene)

Family With Sequence Similarity 90 Member A2, Pseudogene

GCID:
GC08M012172
GIFtS:
22
Genes Participants
UDN Logo

Aliases for FAM90A2P Gene

Aliases for FAM90A2P Gene

  • Family With Sequence Similarity 90 Member A2, Pseudogene 2 3 5
  • Family With Sequence Similarity 90, Member A2, Pseudogene 2

External Ids for FAM90A2P Gene

Previous GeneCards Identifiers for FAM90A2P Gene

  • GC08M012068
  • GC08P007104
  • GC08M012071
  • GC08M012035

Summaries for FAM90A2P Gene

GeneCards Summary for FAM90A2P Gene

FAM90A2P (Family With Sequence Similarity 90 Member A2, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM90A2P Gene

Genomics for FAM90A2P Gene

Products:

  1. Regulatory Element

Regulatory Elements for FAM90A2P Gene

Enhancers for FAM90A2P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G011506 1.9 FANTOM5 Ensembl ENCODE dbSUPER 22.2 +665.1 665139 12.0 PKNOX1 ZNF493 ZFP64 YY1 ZNF121 GATA2 FOS ZNF202 SP3 JUNB PINX1 LOC101929290 FAM167A FAM90A2P LOC105379241 FAM66A MTMR9 ENSG00000255518 ENSG00000255354 FAM66D
GH08G011696 2.4 VISTA FANTOM5 Ensembl ENCODE dbSUPER 12.8 +467.8 467827 25.1 HDGF PKNOX1 FOXA2 ARNT MLX ZFP64 ARID4B SIN3A DMAP1 FEZF1 GATA4 RPS3AP34 FAM90A2P ENSG00000255354 ENSG00000255518 LOC105379241 BLK FAM66A MTMR9 FAM167A
GH08G013048 1.1 Ensembl ENCODE 22.2 -873.4 -873438 3.6 MLX ZFP64 GATA2 FOS ZNF202 ZNF680 ZBTB11 ZNF426 ZNF623 ZNF781 FAM90A2P FAM66A FAM66D ENPP7P12 RNU6-842P PIR45901 GC08P013101
GH08G011472 1.4 Ensembl ENCODE dbSUPER 15.3 +701.8 701835 5.1 PKNOX1 CBX3 SIN3A FEZF1 ZNF2 YY1 ZNF121 ELK1 ZNF366 SCRT2 FAM66A FAM66D FAM167A LOC105379241 FAM90A2P ALG1L11P MTMR9 ENSG00000255310 ENSG00000255020 PIR35143
GH08G011612 0.8 ENCODE 22.2 +564.0 563977 2.1 MLX ZNF121 GATA4 MIXL1 EGR2 ZNF680 ZHX2 ZNF426 MIER2 REST FAM90A2P FAM66A MTMR9 LOC105379241 BLK FAM167A PINX1 FAM167A-AS1 FAM66D LOC101929290
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM90A2P on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM90A2P Gene

Chromosome:
8
Start:
12,172,761 bp from pter
End:
12,177,267 bp from pter
Size:
4,507 bases
Orientation:
Minus strand

Genomic View for FAM90A2P Gene

Genes around FAM90A2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM90A2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM90A2P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAM90A2P Gene

Proteins for FAM90A2P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for FAM90A2P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q658T7-F90A2_HUMAN
    Recommended name:
    Putative protein FAM90A2P
    Protein Accession:
    Q658T7

    Protein attributes for FAM90A2P Gene

    Size:
    463 amino acids
    Molecular mass:
    50084 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for FAM90A2P Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FAM90A2P Gene

Protein Expression for FAM90A2P Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for FAM90A2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM90A2P Gene

Domains & Families for FAM90A2P Gene

Protein Domains for FAM90A2P Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM90A2P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q658T7

UniProtKB/Swiss-Prot:

F90A2_HUMAN :
  • Belongs to the FAM90 family.
Family:
  • Belongs to the FAM90 family.
genes like me logo Genes that share domains with FAM90A2P: view

No data available for Gene Families for FAM90A2P Gene

Function for FAM90A2P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM90A2P Gene

Localization for FAM90A2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM90A2P Gene

Pathways & Interactions for FAM90A2P Gene

SuperPathways for FAM90A2P Gene

PathCards logo More details on SuperPathways for FAM90A2P
No Data Available

Interacting Proteins for FAM90A2P Gene

Gene Ontology (GO) - Biological Process for FAM90A2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM90A2P Gene

Drugs & Compounds for FAM90A2P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAM90A2P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FAM90A2P Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM90A2P Gene

Family with sequence similarity 90, member A2 pseudogene:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM90A2P Gene

No ASD Table

Relevant External Links for FAM90A2P Gene

GeneLoc Exon Structure for
FAM90A2P
ECgene alternative splicing isoforms for
FAM90A2P

Expression for FAM90A2P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM90A2P Gene

mRNA expression in normal human tissues for FAM90A2P Gene
mRNA expression by GTEx for FAM90A2P Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM90A2P Gene



Protein tissue co-expression partners for FAM90A2P Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of FAM90A2P Gene:

FAM90A2P

SOURCE GeneReport for Unigene cluster for FAM90A2P Gene:

Hs.741074
genes like me logo Genes that share expression patterns with FAM90A2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM90A2P Gene

Orthologs for FAM90A2P Gene

Evolution for FAM90A2P Gene

ENSEMBL:
Gene Tree for FAM90A2P (if available)
TreeFam:
Gene Tree for FAM90A2P (if available)

No data available for Orthologs for FAM90A2P Gene

Paralogs for FAM90A2P Gene

(19) SIMAP similar genes for FAM90A2P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM90A2P: view

No data available for Paralogs for FAM90A2P Gene

Variants for FAM90A2P Gene

Sequence variations from dbSNP and Humsavar for FAM90A2P Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1001043633 -- 12,177,938(+) ATGTT(C/G)GCCAG upstream-variant-2KB
rs1001433695 -- 12,176,269(+) CTTGA(A/T)TCGCT intron-variant
rs1004500677 -- 12,174,272(+) TGACC(A/C)CAAGA intron-variant
rs1009851230 -- 12,178,264(+) AGGCT(C/G)TGGCA upstream-variant-2KB
rs1013318145 -- 12,176,178(+) GGACA(C/G)AATGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM90A2P Gene

Variant ID Type Subtype PubMed ID
dgv1270e199 CNV deletion 23128226
dgv154e203 CNV gain+loss 21179565
dgv244e55 CNV gain 17911159
dgv27n31 CNV gain 19718026
dgv7015n100 CNV gain 25217958
dgv7016n100 CNV gain 25217958
dgv7017n100 CNV gain 25217958
dgv7018n100 CNV gain+loss 25217958
dgv7019n100 CNV gain 25217958
dgv7020n100 CNV loss 25217958
dgv7021n100 CNV loss 25217958
dgv7025n100 CNV gain 25217958
dgv7026n100 CNV gain+loss 25217958
esv1006711 CNV gain 20482838
esv22986 CNV gain+loss 19812545
esv2736614 CNV deletion 23290073
esv2759593 CNV gain+loss 17122850
nsv1034132 CNV gain 25217958
nsv1077518 CNV duplication 25765185
nsv1139930 CNV duplication 24896259
nsv1161718 OTHER complex 26073780
nsv428195 CNV gain 18775914
nsv516685 CNV gain+loss 19592680
nsv610319 CNV loss 21841781
nsv8288 CNV gain+loss 18304495
nsv951104 CNV deletion 24416366
nsv967565 CNV duplication 23825009

Relevant External Links for FAM90A2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM90A2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM90A2P Gene

Disorders for FAM90A2P Gene

Relevant External Links for FAM90A2P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM90A2P

No disorders were found for FAM90A2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM90A2P Gene

Publications for FAM90A2P Gene

  1. Analysis of the multi-copy gene family FAM90A as a copy number variant in different ethnic backgrounds. (PMID: 18602769) Bosch N. … Estivill X. (Gene 2008) 3 64
  2. Characterization and evolution of the novel gene family FAM90A in primates originated by multiple duplication and rearrangement events. (PMID: 17684299) Bosch N. … Estivill X. (Hum. Mol. Genet. 2007) 3 64
  3. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4 64
  4. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C. … Lander E.S. (Nature 2006) 4 64

Products for FAM90A2P Gene

Sources for FAM90A2P Gene

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