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FAM90A27P Gene(Pseudogene)

Family With Sequence Similarity 90 Member A27, Pseudogene

GCID:
GC19P053281
GIFtS:
24
Genes Participants
UDN Logo

Aliases for FAM90A27P Gene

Aliases for FAM90A27P Gene

  • Family With Sequence Similarity 90 Member A27, Pseudogene 2 3 5
  • Family With Sequence Similarity 90, Member A27, Pseudogene 2

External Ids for FAM90A27P Gene

Previous GeneCards Identifiers for FAM90A27P Gene

  • GC19P053784

Summaries for FAM90A27P Gene

GeneCards Summary for FAM90A27P Gene

FAM90A27P (Family With Sequence Similarity 90 Member A27, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM90A27P Gene

Genomics for FAM90A27P Gene

Products:

  1. Regulatory Element

Regulatory Elements for FAM90A27P Gene

Enhancers for FAM90A27P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G053308 0.6 ENCODE 11.8 +27.0 27024 0.2 CTCF ZNF654 HDAC2 SUZ12 KDM1A RAD21 ETS1 FAM90A27P VN1R2 ZNF677 ZNF347 FAM90A28P BIRC8
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM90A27P on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM90A27P Gene

Chromosome:
19
Start:
53,281,559 bp from pter
End:
53,284,944 bp from pter
Size:
3,386 bases
Orientation:
Plus strand

Genomic View for FAM90A27P Gene

Genes around FAM90A27P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM90A27P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM90A27P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAM90A27P Gene

Proteins for FAM90A27P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for FAM90A27P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NNH2-F90AR_HUMAN
    Recommended name:
    Protein FAM90A27P
    Protein Accession:
    A6NNH2

    Protein attributes for FAM90A27P Gene

    Size:
    459 amino acids
    Molecular mass:
    49646 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM90A27P Gene

Post-translational modifications for FAM90A27P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAM90A27P Gene

Domains & Families for FAM90A27P Gene

Protein Domains for FAM90A27P Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

A6NNH2

UniProtKB/Swiss-Prot:

F90AR_HUMAN :
  • Belongs to the FAM90 family.
Family:
  • Belongs to the FAM90 family.
genes like me logo Genes that share domains with FAM90A27P: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for FAM90A27P Gene

Function for FAM90A27P Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for FAM90A27P Gene

GenomeRNAi human phenotypes for FAM90A27P:
genes like me logo Genes that share phenotypes with FAM90A27P: view

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM90A27P Gene

Localization for FAM90A27P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM90A27P Gene

Pathways & Interactions for FAM90A27P Gene

SuperPathways for FAM90A27P Gene

PathCards logo More details on SuperPathways for FAM90A27P
No Data Available

Interacting Proteins for FAM90A27P Gene

Gene Ontology (GO) - Biological Process for FAM90A27P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM90A27P Gene

Drugs & Compounds for FAM90A27P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAM90A27P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FAM90A27P Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM90A27P Gene

Family with sequence similarity 90, member A27, pseudogene:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM90A27P Gene

No ASD Table

Relevant External Links for FAM90A27P Gene

GeneLoc Exon Structure for
FAM90A27P
ECgene alternative splicing isoforms for
FAM90A27P

Expression for FAM90A27P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM90A27P Gene

mRNA expression in normal human tissues for FAM90A27P Gene
mRNA expression by GTEx for FAM90A27P Gene

mRNA differential expression in normal tissues according to GTEx for FAM90A27P Gene

This gene is overexpressed in Testis (x41.8) and Stomach (x5.0).

NURSA nuclear receptor signaling pathways regulating expression of FAM90A27P Gene:

FAM90A27P

SOURCE GeneReport for Unigene cluster for FAM90A27P Gene:

Hs.574588
genes like me logo Genes that share expression patterns with FAM90A27P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM90A27P Gene

Orthologs for FAM90A27P Gene

Evolution for FAM90A27P Gene

ENSEMBL:
Gene Tree for FAM90A27P (if available)
TreeFam:
Gene Tree for FAM90A27P (if available)

No data available for Orthologs for FAM90A27P Gene

Paralogs for FAM90A27P Gene

(4) SIMAP similar genes for FAM90A27P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM90A27P: view

No data available for Paralogs for FAM90A27P Gene

Variants for FAM90A27P Gene

Sequence variations from dbSNP and Humsavar for FAM90A27P Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1004577405 -- 53,282,558(+) CAGAG(C/T)AGTTC intron-variant
rs1005823482 -- 53,281,746(+) CTCGT(A/G)ATTAT upstream-variant-2KB
rs1006255567 -- 53,283,281(+) TCACC(-/GT)GTTAG intron-variant
rs1006584644 -- 53,284,696(+) GCCCC(A/G)TCCTC downstream-variant-500B
rs1007826143 -- 53,284,369(+) GACCA(C/T)AGCAA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for FAM90A27P Gene

Variant ID Type Subtype PubMed ID
esv2718787 CNV deletion 23290073
esv2718812 CNV deletion 23290073
esv3644741 CNV gain 21293372
esv6489 OTHER inversion 19470904
nsv1055773 CNV gain 25217958
nsv1078889 OTHER inversion 25765185
nsv1141887 OTHER inversion 24896259
nsv1153752 OTHER inversion 26484159
nsv963076 CNV duplication 23825009

Relevant External Links for FAM90A27P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM90A27P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM90A27P Gene

Disorders for FAM90A27P Gene

Relevant External Links for FAM90A27P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM90A27P

No disorders were found for FAM90A27P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM90A27P Gene

Publications for FAM90A27P Gene

  1. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 3 4 64

Products for FAM90A27P Gene

Sources for FAM90A27P Gene

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