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Aliases for FAM90A25P Gene

Aliases for FAM90A25P Gene

  • Family With Sequence Similarity 90 Member A25, Pseudogene 2 3 5
  • Family With Sequence Similarity 90, Member A25, Pseudogene 2

External Ids for FAM90A25P Gene

Previous GeneCards Identifiers for FAM90A25P Gene

  • GC08M012319
  • GC08M012273

Summaries for FAM90A25P Gene

GeneCards Summary for FAM90A25P Gene

FAM90A25P (Family With Sequence Similarity 90 Member A25, Pseudogene) is a Pseudogene.

Additional gene information for FAM90A25P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM90A25P Gene

Genomics for FAM90A25P Gene

Regulatory Elements for FAM90A25P Gene

Enhancers for FAM90A25P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H013382 0.4 dbSUPER 4.8 -965.2 -965227 1 JUN DLC1 FAM90A25P MTND4P7 GC08M013456
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM90A25P on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM90A25P Gene

Chromosome:
8
Start:
12,414,521 bp from pter
End:
12,418,090 bp from pter
Size:
3,570 bases
Orientation:
Minus strand

Genomic View for FAM90A25P Gene

Genes around FAM90A25P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM90A25P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM90A25P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM90A25P Gene

Proteins for FAM90A25P Gene

Post-translational modifications for FAM90A25P Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM90A25P Gene

Domains & Families for FAM90A25P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM90A25P Gene

Function for FAM90A25P Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for FAM90A25P
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM90A25P Gene

Localization for FAM90A25P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM90A25P Gene

Pathways & Interactions for FAM90A25P Gene

SuperPathways for FAM90A25P Gene

No Data Available

Interacting Proteins for FAM90A25P Gene

Gene Ontology (GO) - Biological Process for FAM90A25P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM90A25P Gene

Drugs & Compounds for FAM90A25P Gene

No Compound Related Data Available

Transcripts for FAM90A25P Gene

mRNA/cDNA for FAM90A25P Gene

(2) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM90A25P Gene

Family with sequence similarity 90, member A7 pseudogene:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for FAM90A25P
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for FAM90A25P Gene

No ASD Table

Relevant External Links for FAM90A25P Gene

GeneLoc Exon Structure for
FAM90A25P
ECgene alternative splicing isoforms for
FAM90A25P

Expression for FAM90A25P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM90A25P Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM90A25P Gene:

FAM90A25P

SOURCE GeneReport for Unigene cluster for FAM90A25P Gene:

Hs.650464
genes like me logo Genes that share expression patterns with FAM90A25P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM90A25P Gene

Orthologs for FAM90A25P Gene

Evolution for FAM90A25P Gene

ENSEMBL:
Gene Tree for FAM90A25P (if available)
TreeFam:
Gene Tree for FAM90A25P (if available)

No data available for Orthologs for FAM90A25P Gene

Paralogs for FAM90A25P Gene

No data available for Paralogs for FAM90A25P Gene

Variants for FAM90A25P Gene

Sequence variations from dbSNP and Humsavar for FAM90A25P Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1001675025 -- 12,414,865(+) GAACC(A/T)CGCGA nc-transcript-variant
rs1002147038 -- 12,416,977(+) CCCAT(A/C)CTCCA intron-variant
rs1010474084 -- 12,417,355(+) TCAGG(-/T)TTTCC nc-transcript-variant
rs1013947210 -- 12,414,791(+) TGACT(C/T)CTGCG nc-transcript-variant
rs1020283613 -- 12,415,312(+) GGGCC(C/G)CATCA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM90A25P Gene

Variant ID Type Subtype PubMed ID
dgv11967n54 CNV gain 21841781
dgv1270e199 CNV deletion 23128226
dgv140n17 CNV loss 16327808
dgv154e203 CNV gain+loss 21179565
dgv244e55 CNV gain 17911159
dgv245e55 CNV gain 17911159
dgv246e55 CNV gain 17911159
dgv263n111 CNV deletion 26073780
dgv264n111 CNV duplication 26073780
dgv7015n100 CNV gain 25217958
dgv7016n100 CNV gain 25217958
dgv7017n100 CNV gain 25217958
dgv7018n100 CNV gain+loss 25217958
dgv7019n100 CNV gain 25217958
dgv7020n100 CNV loss 25217958
dgv7021n100 CNV loss 25217958
dgv7025n100 CNV gain 25217958
dgv7026n100 CNV gain+loss 25217958
dgv7032n100 CNV gain 25217958
dgv7033n100 CNV gain 25217958
dgv7035n100 CNV loss 25217958
dgv7036n100 CNV gain 25217958
dgv7037n100 CNV loss 25217958
dgv7039n100 CNV gain+loss 25217958
dgv7040n100 CNV gain 25217958
dgv7046n100 CNV gain+loss 25217958
dgv7047n100 CNV gain+loss 25217958
dgv7048n100 CNV loss 25217958
dgv7049n100 CNV gain 25217958
dgv7050n100 CNV gain+loss 25217958
dgv7051n100 CNV gain 25217958
dgv7052n100 CNV gain+loss 25217958
dgv7053n100 CNV loss 25217958
dgv7054n100 CNV gain 25217958
dgv7055n100 CNV gain+loss 25217958
dgv7056n100 CNV gain 25217958
dgv7057n100 CNV loss 25217958
dgv7058n100 CNV loss 25217958
dgv7059n100 CNV loss 25217958
dgv7060n100 CNV loss 25217958
dgv7064n100 CNV loss 25217958
dgv7065n100 CNV gain+loss 25217958
dgv7066n100 CNV gain 25217958
dgv7067n100 CNV loss 25217958
dgv7068n100 CNV gain+loss 25217958
dgv7069n100 CNV loss 25217958
dgv7070n100 CNV gain+loss 25217958
dgv7071n100 CNV gain 25217958
dgv7072n100 CNV loss 25217958
esv1005031 CNV gain 20482838
esv25198 CNV gain+loss 19812545
esv2736614 CNV deletion 23290073
esv2759593 CNV gain+loss 17122850
esv3891341 CNV gain 25118596
nsv1020906 CNV loss 25217958
nsv1032173 CNV loss 25217958
nsv1032729 CNV gain+loss 25217958
nsv1032964 CNV gain 25217958
nsv1034659 CNV loss 25217958
nsv1115781 CNV duplication 24896259
nsv1161723 CNV duplication 26073780
nsv428195 CNV gain 18775914
nsv469553 CNV loss 16826518
nsv471652 CNV gain+loss 15918152
nsv516685 CNV gain+loss 19592680
nsv821657 CNV loss 15273396
nsv8288 CNV gain+loss 18304495
nsv831234 CNV loss 17160897
nsv831235 CNV loss 17160897
nsv951106 CNV deletion 24416366
nsv971288 CNV duplication 23825009

Relevant External Links for FAM90A25P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM90A25P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM90A25P Gene

Disorders for FAM90A25P Gene

Relevant External Links for FAM90A25P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM90A25P

No disorders were found for FAM90A25P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM90A25P Gene

Publications for FAM90A25P Gene

  1. Analysis of the multi-copy gene family FAM90A as a copy number variant in different ethnic backgrounds. (PMID: 18602769) Bosch N … Estivill X (Gene 2008) 3 60
  2. Characterization and evolution of the novel gene family FAM90A in primates originated by multiple duplication and rearrangement events. (PMID: 17684299) Bosch N … Estivill X (Human molecular genetics 2007) 3 60

Products for FAM90A25P Gene

Sources for FAM90A25P Gene

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