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FAM90A12P Gene(Pseudogene)

Family With Sequence Similarity 90 Member A12, Pseudogene

GCID:
GC08M008027
GIFtS:
18
Genes Participants
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Aliases for FAM90A12P Gene

Aliases for FAM90A12P Gene

  • Family With Sequence Similarity 90 Member A12, Pseudogene 2 5
  • FAM90A12 3 4
  • Family With Sequence Similarity 90, Member A12, Pseudogene 2
  • Family With Sequence Similarity 90, Member A12 2
  • Putative Protein FAM90A12 3

External Ids for FAM90A12P Gene

Previous HGNC Symbols for FAM90A12P Gene

  • FAM90A12

Previous GeneCards Identifiers for FAM90A12P Gene

  • GC08M007888
  • GC08M007890
  • GC08M007893
  • GC08M007896
  • GC08M007901

Summaries for FAM90A12P Gene

Entrez Gene Summary for FAM90A12P Gene

  • FAM90A12 belongs to subfamily II of the primate-specific FAM90A gene family, which originated from multiple duplications and rearrangements (Bosch et al., 2007 [PubMed 17684299]). For background information on the FAM90A gene family, as well as information on the evolution of FAM90A genes, see FAM90A1 (MIM 613041).[supplied by OMIM, Jul 2010]

GeneCards Summary for FAM90A12P Gene

FAM90A12P (Family With Sequence Similarity 90 Member A12, Pseudogene) is a Pseudogene. GO annotations related to this gene include nucleic acid binding.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM90A12P Gene

Genomics for FAM90A12P Gene

Products:

  1. Regulatory Element

Regulatory Elements for FAM90A12P Gene

Enhancers for FAM90A12P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G008285 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -256.1 -256145 5.3 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF766 FOS SP5 FAM86B3P FAM66B FAM66E OR7E154P FAM90A12P FAM90A11P ALG1L13P PRAG1
GH08G008427 1.1 ENCODE 11.1 -396.4 -396383 3.0 FOXA2 PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF207 FOS SP5 FAM66E OR7E154P FAM86B3P FAM90A12P FAM90A11P PRAG1 ALG1L13P ENSG00000253505 ENSG00000254153
GH08G008701 1 ENCODE 11 -669.7 -669715 1.9 ATF1 AGO1 ZFP64 ARID4B SIN3A ZNF48 GLIS2 ELK1 ZNF143 KLF13 CLDN23 FAM66E OR7E154P FAM86B3P FAM90A12P FAM90A11P GC08P008703
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM90A12P on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM90A12P Gene

Chromosome:
8
Start:
8,027,074 bp from pter
End:
8,032,305 bp from pter
Size:
5,232 bases
Orientation:
Minus strand

Genomic View for FAM90A12P Gene

Genes around FAM90A12P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM90A12P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM90A12P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAM90A12P Gene

Proteins for FAM90A12P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for FAM90A12P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MX19-F90AC_HUMAN
    Recommended name:
    Putative protein FAM90A12P
    Protein Accession:
    A8MX19

    Protein attributes for FAM90A12P Gene

    Size:
    464 amino acids
    Molecular mass:
    49786 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM90A12P Gene

Post-translational modifications for FAM90A12P Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM90A12P Gene

Domains & Families for FAM90A12P Gene

Protein Domains for FAM90A12P Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM90A12P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A8MX19

UniProtKB/Swiss-Prot:

F90AC_HUMAN :
  • Belongs to the FAM90 family.
Family:
  • Belongs to the FAM90 family.
genes like me logo Genes that share domains with FAM90A12P: view

No data available for Gene Families for FAM90A12P Gene

Function for FAM90A12P Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM90A12P Gene

Localization for FAM90A12P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM90A12P Gene

Pathways & Interactions for FAM90A12P Gene

SuperPathways for FAM90A12P Gene

PathCards logo More details on SuperPathways for FAM90A12P
No Data Available

Interacting Proteins for FAM90A12P Gene

Gene Ontology (GO) - Biological Process for FAM90A12P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM90A12P Gene

Drugs & Compounds for FAM90A12P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAM90A12P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FAM90A12P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM90A12P Gene

No ASD Table

Relevant External Links for FAM90A12P Gene

GeneLoc Exon Structure for
FAM90A12P
ECgene alternative splicing isoforms for
FAM90A12P

Expression for FAM90A12P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM90A12P Gene

mRNA expression in normal human tissues for FAM90A12P Gene
mRNA expression by GTEx for FAM90A12P Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM90A12P Gene:

FAM90A12P
genes like me logo Genes that share expression patterns with FAM90A12P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM90A12P Gene

Orthologs for FAM90A12P Gene

Evolution for FAM90A12P Gene

ENSEMBL:
Gene Tree for FAM90A12P (if available)
TreeFam:
Gene Tree for FAM90A12P (if available)

No data available for Orthologs for FAM90A12P Gene

Paralogs for FAM90A12P Gene

(19) SIMAP similar genes for FAM90A12P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM90A12P: view

No data available for Paralogs for FAM90A12P Gene

Variants for FAM90A12P Gene

Relevant External Links for FAM90A12P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM90A12P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM90A12P Gene

Disorders for FAM90A12P Gene

No disorders were found for FAM90A12P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FAM90A12P Gene

Publications for FAM90A12P Gene

  1. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C. … Lander E.S. (Nature 2006) 3 4 64
  2. Analysis of the multi-copy gene family FAM90A as a copy number variant in different ethnic backgrounds. (PMID: 18602769) Bosch N. … Estivill X. (Gene 2008) 3 64
  3. Characterization and evolution of the novel gene family FAM90A in primates originated by multiple duplication and rearrangement events. (PMID: 17684299) Bosch N. … Estivill X. (Hum. Mol. Genet. 2007) 3 64

Products for FAM90A12P Gene

Sources for FAM90A12P Gene

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