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Aliases for FAM90A10P Gene

Aliases for FAM90A10P Gene

  • Family With Sequence Similarity 90 Member A10, Pseudogene 2 5
  • FAM90A10 3 4
  • Family With Sequence Similarity 90, Member A10, Pseudogene 2
  • Family With Sequence Similarity 90, Member A10 2
  • Putative Protein FAM90A10 3

External Ids for FAM90A10P Gene

Previous HGNC Symbols for FAM90A10P Gene

  • FAM90A10

Previous GeneCards Identifiers for FAM90A10P Gene

  • GC08P007629

Summaries for FAM90A10P Gene

Entrez Gene Summary for FAM90A10P Gene

  • FAM90A10 belongs to subfamily II of the primate-specific FAM90A gene family, which originated from multiple duplications and rearrangements (Bosch et al., 2007 [PubMed 17684299]). For background information on the FAM90A gene family, as well as information on the evolution of FAM90A genes, see FAM90A1 (MIM 613041).[supplied by OMIM, Oct 2009]

GeneCards Summary for FAM90A10P Gene

FAM90A10P (Family With Sequence Similarity 90 Member A10, Pseudogene) is a Pseudogene. GO annotations related to this gene include nucleic acid binding.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM90A10P Gene

Genomics for FAM90A10P Gene

Regulatory Elements for FAM90A10P Gene

Enhancers for FAM90A10P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G007783 0.4 Ensembl 0.4 +15.0 14970 0.7 NRF1 PRR23D2 FAM90A10P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM90A10P on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM90A10P Gene

Chromosome:
8
Start:
7,768,977 bp from pter
End:
7,771,988 bp from pter
Size:
3,012 bases
Orientation:
Plus strand

Genomic View for FAM90A10P Gene

Genes around FAM90A10P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM90A10P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM90A10P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM90A10P Gene

Proteins for FAM90A10P Gene

  • Protein details for FAM90A10P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NDY2-F90AA_HUMAN
    Recommended name:
    Putative protein FAM90A10P
    Protein Accession:
    A6NDY2

    Protein attributes for FAM90A10P Gene

    Size:
    464 amino acids
    Molecular mass:
    49635 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM90A10P Gene

Post-translational modifications for FAM90A10P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAM90A10P Gene

Domains & Families for FAM90A10P Gene

Protein Domains for FAM90A10P Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM90A10P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NDY2

UniProtKB/Swiss-Prot:

F90AA_HUMAN :
  • Belongs to the FAM90 family.
Family:
  • Belongs to the FAM90 family.
genes like me logo Genes that share domains with FAM90A10P: view

No data available for Gene Families for FAM90A10P Gene

Function for FAM90A10P Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM90A10P Gene

Localization for FAM90A10P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM90A10P Gene

Pathways & Interactions for FAM90A10P Gene

SuperPathways for FAM90A10P Gene

No Data Available

Interacting Proteins for FAM90A10P Gene

Gene Ontology (GO) - Biological Process for FAM90A10P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM90A10P Gene

Drugs & Compounds for FAM90A10P Gene

No Compound Related Data Available

Transcripts for FAM90A10P Gene

mRNA/cDNA for FAM90A10P Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM90A10P Gene

Putative protein FAM90A10:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM90A10P Gene

No ASD Table

Relevant External Links for FAM90A10P Gene

GeneLoc Exon Structure for
FAM90A10P
ECgene alternative splicing isoforms for
FAM90A10P

Expression for FAM90A10P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM90A10P Gene

Protein differential expression in normal tissues from HIPED for FAM90A10P Gene

This gene is overexpressed in Heart (68.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM90A10P Gene



Protein tissue co-expression partners for FAM90A10P Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM90A10P Gene:

FAM90A10P

SOURCE GeneReport for Unigene cluster for FAM90A10P Gene:

Hs.694406
genes like me logo Genes that share expression patterns with FAM90A10P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM90A10P Gene

Orthologs for FAM90A10P Gene

Evolution for FAM90A10P Gene

ENSEMBL:
Gene Tree for FAM90A10P (if available)
TreeFam:
Gene Tree for FAM90A10P (if available)

No data available for Orthologs for FAM90A10P Gene

Paralogs for FAM90A10P Gene

genes like me logo Genes that share paralogs with FAM90A10P: view

No data available for Paralogs for FAM90A10P Gene

Variants for FAM90A10P Gene

Sequence variations from dbSNP and Humsavar for FAM90A10P Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000852516 -- 7,769,482(+) GTCCC(C/G)TCTTT upstream-variant-2KB
rs1014370401 -- 7,770,682(+) AAGAC(C/G)TCCCG intron-variant
rs1015261804 -- 7,771,519(+) ACCGA(-/G)ACTGG downstream-variant-500B
rs1024373059 -- 7,771,080(+) TGGAC(C/G)CTGTC nc-transcript-variant
rs1028812613 -- 7,771,632(+) CGCCC(C/G)AGATG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for FAM90A10P Gene

Variant ID Type Subtype PubMed ID
dgv11911n54 CNV loss 21841781
dgv11913n54 CNV gain 21841781
dgv11914n54 CNV gain 21841781
dgv11928n54 CNV gain 21841781
dgv2035e212 CNV gain 25503493
dgv6882n100 CNV gain 25217958
dgv6887n100 CNV loss 25217958
dgv6890n100 CNV gain 25217958
dgv6895n100 CNV loss 25217958
dgv6896n100 CNV gain+loss 25217958
dgv6908n100 CNV gain 25217958
dgv6909n100 CNV gain 25217958
dgv6910n100 CNV gain+loss 25217958
dgv6911n100 CNV loss 25217958
dgv6912n100 CNV loss 25217958
dgv6915n100 CNV gain 25217958
dgv6926n100 CNV loss 25217958
dgv6927n100 CNV gain+loss 25217958
dgv6935n100 CNV gain 25217958
dgv6936n100 CNV gain+loss 25217958
dgv6940n100 CNV loss 25217958
dgv6946n100 CNV gain 25217958
dgv6948n100 CNV gain+loss 25217958
dgv6949n100 CNV gain 25217958
dgv6950n100 CNV loss 25217958
dgv6955n100 CNV gain 25217958
esv25631 CNV gain+loss 19812545
esv2752265 CNV gain 17911159
esv2752266 CNV loss 17911159
esv2759589 CNV gain+loss 17122850
esv2761169 CNV gain+loss 21179565
esv2764098 CNV gain+loss 21179565
esv33606 CNV gain+loss 17666407
esv3584574 CNV gain 24956385
esv3891318 CNV gain 25118596
esv3891321 CNV gain+loss 25118596
esv992071 CNV gain 20482838
nsv1026778 CNV gain 25217958
nsv1031577 CNV gain 25217958
nsv1077011 CNV deletion 25765185
nsv1112956 CNV deletion 24896259
nsv1140256 OTHER inversion 24896259
nsv1145186 CNV deletion 24896259
nsv23 CNV insertion 15895083
nsv428194 CNV gain+loss 18775914
nsv442397 CNV gain 18776908
nsv471650 CNV gain+loss 15918152
nsv508496 CNV deletion 20534489
nsv510977 OTHER complex 20534489
nsv515968 CNV gain+loss 19592680
nsv6068 CNV deletion 18451855
nsv6069 CNV insertion 18451855
nsv821173 CNV deletion 20802225
nsv821656 CNV gain 15273396
nsv8281 CNV gain+loss 18304495
nsv951093 CNV deletion 24416366
nsv981906 CNV duplication 23825009

Relevant External Links for FAM90A10P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM90A10P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM90A10P Gene

Disorders for FAM90A10P Gene

Relevant External Links for FAM90A10P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM90A10P

No disorders were found for FAM90A10P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM90A10P Gene

Publications for FAM90A10P Gene

  1. Analysis of the multi-copy gene family FAM90A as a copy number variant in different ethnic backgrounds. (PMID: 18602769) Bosch N. … Estivill X. (Gene 2008) 3 64
  2. Characterization and evolution of the novel gene family FAM90A in primates originated by multiple duplication and rearrangement events. (PMID: 17684299) Bosch N. … Estivill X. (Hum. Mol. Genet. 2007) 3 64
  3. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C. … Lander E.S. (Nature 2006) 4 64

Products for FAM90A10P Gene

Sources for FAM90A10P Gene

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