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FAM8A6P Gene(Pseudogene)

Family With Sequence Similarity 8 Member A6, Pseudogene

GCID:
GC06M134603
GIFtS:
16
Genes Participants
UDN Logo

Aliases for FAM8A6P Gene

Subcategory (RNA class) for FAM8A6P Gene

lncRNA

Aliases for FAM8A6P Gene

  • Family With Sequence Similarity 8 Member A6, Pseudogene 2 3 5
  • Family With Sequence Similarity 8, Member A6 Pseudogene 2

External Ids for FAM8A6P Gene

ORGUL Members for FAM8A6P Gene

Previous GeneCards Identifiers for FAM8A6P Gene

  • GC06U990293
  • GC06M134857
  • GC06M134902
  • GC06M134963
  • GC06M134921

Summaries for FAM8A6P Gene

GeneCards Summary for FAM8A6P Gene

FAM8A6P (Family With Sequence Similarity 8 Member A6, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM8A6P Gene

Genomics for FAM8A6P Gene

Products:

  1. Regulatory Element

Regulatory Elements for FAM8A6P Gene

Enhancers for FAM8A6P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G134588 1 Ensembl ENCODE 0.4 +14.8 14805 2.5 GTF2F1 TBP JUN MAX RAD21 BRCA1 RFX5 ZNF316 SMC3 RCOR1 ENSG00000229722 FAM8A6P LOC101928249
GH06G134529 1.3 ENCODE dbSUPER 0.2 +74.4 74380 1.8 PKNOX1 FOXA2 ATF1 MLX ARID4B YBX1 YY1 FOS SP5 ZHX2 LOC101928249 FAM8A6P
GH06G134534 1.3 Ensembl ENCODE dbSUPER 0.2 +68.5 68529 3.7 CTCF JUN INSM2 MAX RAD21 FOSL1 HIC1 RBAK SMC3 RCOR1 SGK1 LOC101928249 FAM8A6P
GH06G134549 1.2 Ensembl ENCODE dbSUPER 0.2 +54.0 53998 3.0 CBFB JUN MAFG ASH2L CEBPB JUNB RBBP5 RAD21 NR2F2 CBX5 SGK1 LOC101928249 FAM8A6P
GH06G134561 0.8 dbSUPER 0.3 +39.7 39695 7.1 ELF3 CTCF ZNF146 CBX3 ZNF2 RAD21 ZKSCAN1 ZNF335 GATA3 GATA2 SGK1 FAM8A6P LOC101928249
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM8A6P on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM8A6P Gene

Chromosome:
6
Start:
134,603,142 bp from pter
End:
134,604,698 bp from pter
Size:
1,557 bases
Orientation:
Minus strand

Genomic View for FAM8A6P Gene

Genes around FAM8A6P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM8A6P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM8A6P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAM8A6P Gene

Proteins for FAM8A6P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for FAM8A6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM8A6P Gene

Domains & Families for FAM8A6P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM8A6P Gene

Function for FAM8A6P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM8A6P Gene

Localization for FAM8A6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM8A6P Gene

Pathways & Interactions for FAM8A6P Gene

SuperPathways for FAM8A6P Gene

PathCards logo More details on SuperPathways for FAM8A6P
No Data Available

Interacting Proteins for FAM8A6P Gene

Gene Ontology (GO) - Biological Process for FAM8A6P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM8A6P Gene

Drugs & Compounds for FAM8A6P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAM8A6P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FAM8A6P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM8A6P Gene

No ASD Table

Relevant External Links for FAM8A6P Gene

GeneLoc Exon Structure for
FAM8A6P
ECgene alternative splicing isoforms for
FAM8A6P

Expression for FAM8A6P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM8A6P Gene

mRNA expression in normal human tissues for FAM8A6P Gene
mRNA expression by GTEx for FAM8A6P Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM8A6P Gene:

FAM8A6P
genes like me logo Genes that share expression patterns with FAM8A6P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM8A6P Gene

Orthologs for FAM8A6P Gene

Evolution for FAM8A6P Gene

ENSEMBL:
Gene Tree for FAM8A6P (if available)
TreeFam:
Gene Tree for FAM8A6P (if available)

No data available for Orthologs for FAM8A6P Gene

Paralogs for FAM8A6P Gene

No data available for Paralogs for FAM8A6P Gene

Variants for FAM8A6P Gene

Relevant External Links for FAM8A6P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM8A6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM8A6P Gene

Disorders for FAM8A6P Gene

Relevant External Links for FAM8A6P

Genetic Association Database (GAD)
FAM8A6P

No disorders were found for FAM8A6P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM8A6P Gene

Publications for FAM8A6P Gene

  1. Transduction of the human gene FAM8A1 by endogenous retrovirus during primate evolution. (PMID: 11707071) Jamain S. … Bourgeron T. (Genomics 2001) 2 3 64
  2. Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease. (PMID: 20708005) Chalasani N. … Rotter J.I. (Gastroenterology 2010) 46 64
  3. Framingham Heart Study genome-wide association: results for pulmonary function measures. (PMID: 17903307) Wilk J.B. … O'Connor G.T. (BMC Med. Genet. 2007) 46 64

Products for FAM8A6P Gene

Sources for FAM8A6P Gene

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