Aliases for FAM8A1 Gene
Aliases for FAM8A1 Gene
External Ids for FAM8A1 Gene
- HGNC: 16372
- Entrez Gene: 51439
- Ensembl: ENSG00000137414
- UniProtKB: Q9UBU6
Previous GeneCards Identifiers for FAM8A1 Gene
- GC06P017658
- GC06P017708
- GC06P017545
Summaries for FAM8A1 Gene
GeneCards Summary for FAM8A1 Gene
FAM8A1 (Family With Sequence Similarity 8 Member A1) is a Protein Coding gene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM8A1 Gene
Genomics for FAM8A1 Gene
Regulatory Elements for FAM8A1 Gene
Enhancers for FAM8A1 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH06G017701 | 1.8 | FANTOM5 ENCODE dbSUPER | 5.1 | +104.4 | 104386 | 6.4 | CREB3L1 MLX AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 | NUP153 LOC105374952 RNU6-190P FAM8A1 KDM1B |
| GH06G017599 | 1.1 | ENCODE | 7.2 | +0.7 | 671 | 2.9 | HDGF FOXA2 PKNOX1 CREB3L1 MLX ARNT ZFP64 ARID4B SIN3A ZNF2 | NUP153 LOC105374952 FAM8A1 RNU6-190P |
| GH06G018022 | 1.2 | Ensembl ENCODE dbSUPER | 5.3 | +422.8 | 422817 | 1.6 | TEAD4 MAX RBBP5 REST CHD7 TEAD3 ZNF316 ZFHX2 JUND BCL11A | KIF13A NHLRC1 FAM8A1 GC06P018054 |
| GH06G018361 | 1.1 | Ensembl ENCODE dbSUPER | 5.1 | +762.1 | 762082 | 1.4 | JUN BHLHE40 SIN3A JUND FOS HNF4A MAFK NFE2L2 | RNF144B DEK FAM8A1 PIR39754 GC06P018364 PIR61433 |
| GH06G017580 | 0.9 | Ensembl ENCODE | 5.5 | -19.6 | -19587 | 1.0 | PHF8 ZNF687 NFYC SIN3A E2F1 NONO POLR2A ZBTB33 | FAM8A1 GC06P017580 SUMO2P13 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around FAM8A1 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the FAM8A1 gene promoter:
Regulatory Element Products
Genomic Location for FAM8A1 Gene
- Chromosome:
- 6
- Start:
- 17,600,287 bp from pter
- End:
- 17,611,719 bp from pter
- Size:
- 11,433 bases
- Orientation:
- Plus strand
Genomic View for FAM8A1 Gene
Genes around FAM8A1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 6p22.3 by Ensembl
- 6p22.3 by Entrez Gene
- 6p22.3 by HGNC
FAM8A1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for FAM8A1 Gene
Proteins for FAM8A1 Gene
-
Protein details for FAM8A1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9UBU6-FA8A1_HUMAN
- Recommended name:
- Protein FAM8A1
- Protein Accession:
- Q9UBU6
- B2R725
Protein attributes for FAM8A1 Gene
- Size:
- 413 amino acids
- Molecular mass:
- 44123 Da
- Quaternary structure:
- No Data Available
Protein Expression for FAM8A1 Gene
Post-translational modifications for FAM8A1 Gene
Other Protein References for FAM8A1 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
Custom Antibody ServicesOriGene Antibodies for FAM8A1
- Novus Biologicals Antibodies for FAM8A1
- Invitrogen Antibodies for FAM8A1
- Search GeneTex for Antibodies for FAM8A1
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for FAM8A1
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- Novus Biologicals proteins for FAM8A1
- Search GeneTex for Proteins for FAM8A1
Assay Products
No data available for DME Specific Peptides for FAM8A1 Gene
Domains & Families for FAM8A1 Gene
Suggested Antigen Peptide Sequences for FAM8A1 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families and UniProtKB/Swiss-Prot for FAM8A1 Gene
Function for FAM8A1 Gene
Phenotypes for FAM8A1 Gene
- GenomeRNAi human phenotypes for FAM8A1:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
-
ViGene Biosciences lentiviral particle packaged cDNA for FAM8A1 gene
-
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CRISPR Products
-
OriGene CRISPR knockouts for FAM8A1
-
Santa Cruz Biotechnology (SCBT) CRISPR for FAM8A1
miRNA for FAM8A1 Gene
- miRTarBase miRNAs that target FAM8A1
-
- hsa-mir-30b-5p (MIRT023417)
- hsa-mir-99b-5p (MIRT044206)
- hsa-mir-17-5p (MIRT050814)
- hsa-mir-30a-5p (MIRT218370)
- hsa-mir-30c-5p (MIRT218371)
- hsa-mir-30d-5p (MIRT218372)
- hsa-mir-30e-5p (MIRT218373)
- hsa-mir-3679-3p (MIRT552094)
- hsa-mir-2355-5p (MIRT552095)
- hsa-mir-524-5p (MIRT552096)
- hsa-mir-520d-5p (MIRT552097)
- hsa-mir-4424 (MIRT552098)
- hsa-mir-6840-3p (MIRT552099)
- hsa-mir-376c-3p (MIRT552100)
- hsa-mir-7844-5p (MIRT552101)
- hsa-mir-1305 (MIRT639749)
- hsa-mir-4775 (MIRT639750)
- hsa-mir-590-3p (MIRT639751)
miRNA Products
- Search ViGene Biosciences for FAM8A1
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for FAM8A1
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-
ViGene Biosciences ready-to-package AAV shRNAs for FAM8A1 gene
Clone Products
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Cell Line Products
-
Horizon Cell Lines for FAM8A1
-
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-
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Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM8A1 Gene
Localization for FAM8A1 Gene
Subcellular locations from UniProtKB/Swiss-Prot for FAM8A1 Gene
- Membrane; Multi-pass membrane protein.
| Compartment | Confidence |
|---|---|
| plasma membrane | 3 |
| golgi apparatus | 2 |
| peroxisome | 1 |
| endoplasmic reticulum | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0016021 | integral component of membrane | IEA | -- |
Pathways & Interactions for FAM8A1 Gene
No Data Available
No data available for Pathways by source and SIGNOR curated interactions for FAM8A1 Gene
Transcripts for FAM8A1 Gene
mRNA/cDNA for FAM8A1 Gene
- (1) REFSEQ mRNAs :
- (8) Additional mRNA sequences :
- (182) Selected AceView cDNA sequences:
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for FAM8A1 Gene
CRISPR Products
-
OriGene CRISPR knockouts for FAM8A1
-
Santa Cruz Biotechnology (SCBT) CRISPR for FAM8A1
miRNA Products
- Search ViGene Biosciences for FAM8A1
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for FAM8A1
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-
ViGene Biosciences ready-to-package AAV shRNAs for FAM8A1 gene
Clone Products
-
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Flow Cytometry Products
Expression for FAM8A1 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Blood (Hematopoietic System)
- Granulocytes Peripheral Blood
This gene is overexpressed in Adrenal (35.1) and Testis (7.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for FAM8A1 Gene
NURSA nuclear receptor signaling pathways regulating expression of FAM8A1 Gene:
FAM8A1SOURCE GeneReport for Unigene cluster for FAM8A1 Gene:
Hs.95260mRNA Expression by UniProt/SwissProt for FAM8A1 Gene:
Q9UBU6-FA8A1_HUMAN
Tissue specificity:
Ubiquitously expressed, with a higher level of expression in testis.
Evidence on tissue expression from TISSUES for FAM8A1 Gene
- Nervous system(4.7)
- Liver(4.3)
Primer Products
-
OriGene qPCR primer pairs and template standards for FAM8A1
-
OriGene qPCR primer pairs for FAM8A1
No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM8A1 Gene
Orthologs for FAM8A1 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | FAM8A1 34 35 |
|
||
| cow (Bos Taurus) |
Mammalia | FAM8A1 34 35 |
|
||
| dog (Canis familiaris) |
Mammalia | FAM8A1 34 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Fam8a1 34 |
|
||
| mouse (Mus musculus) |
Mammalia | C78339 34 35 |
|
||
| Fam8a1 16 |
|
||||
| platypus (Ornithorhynchus anatinus) |
Mammalia | FAM8A1 35 |
|
OneToOne | |
| oppossum (Monodelphis domestica) |
Mammalia | FAM8A1 35 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | FAM8A1 34 |
|
||
| tropical clawed frog (Silurana tropicalis) |
Amphibia | fam8a1 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | LOC100537042 34 |
|
||
| FAM8A1 (2 of 3) 35 |
|
OneToMany | |||
| FAM8A1 (3 of 3) 35 |
|
OneToMany | |||
| fam8a1 35 |
|
OneToMany | |||
| -- 34 |
|
||||
| fruit fly (Drosophila melanogaster) |
Insecta | CG8237 35 |
|
OneToOne | |
| sea squirt (Ciona savignyi) |
Ascidiacea | -- 35 |
|
OneToOne |
- Species where no ortholog for FAM8A1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for FAM8A1 Gene
Pseudogenes.org Pseudogenes for FAM8A1 Gene
No data available for Paralogs for FAM8A1 Gene
Variants for FAM8A1 Gene
| SNP ID | Clin | Chr 06 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000283608 | -- | 17,607,811(+) | GCATG(-/T)TTTTT | intron-variant | |
| rs1000358308 | -- | 17,607,493(+) | GTATC(-/TA)TATAC | intron-variant | |
| rs1000389030 | -- | 17,599,083(+) | AGAGA(C/T)GGGGT | nc-transcript-variant, upstream-variant-2KB | |
| rs1000405870 | -- | 17,604,707(+) | CCGTG(A/C)TAGTA | intron-variant | |
| rs1000727638 | -- | 17,611,476(+) | AACAT(A/G)TCAAT | utr-variant-3-prime |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1715e212 | CNV | gain | 25503493 |
| dgv5922n100 | CNV | gain | 25217958 |
| esv2731633 | CNV | deletion | 23290073 |
| nsv1027813 | CNV | gain | 25217958 |
| nsv516012 | CNV | gain+loss | 19592680 |
| nsv601046 | CNV | gain | 21841781 |
| nsv830596 | CNV | gain | 17160897 |
Residual Variation Intolerance Score:
21% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
0.50;
10.77% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for FAM8A1 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM8A1 Gene
Disorders for FAM8A1 Gene
Relevant External Links for FAM8A1
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- FAM8A1
No disorders were found for FAM8A1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM8A1 Gene
Publications for FAM8A1 Gene
- Transduction of the human gene FAM8A1 by endogenous retrovirus during primate evolution. (PMID: 11707071) Jamain S. … Bourgeron T. (Genomics 2001) 2 3 4 64
- Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry. (PMID: 15144186) Brill L.M. … Peters E.C. (Anal. Chem. 2004) 3 4 64
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
- The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4 64
- The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
Products for FAM8A1 Gene
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- Novus Biologicals Antibodies for FAM8A1
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- VectorBuilder custom plasmid, inducible vectors for FAM8A1
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- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for FAM8A1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
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- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
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- (155) Gene ORGANizer