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Aliases for FAM89A Gene

Aliases for FAM89A Gene

  • Family With Sequence Similarity 89 Member A 2 3 5
  • Family With Sequence Similarity 89, Member A 2 3
  • C1orf153 3 4
  • Chromosome 1 Open Reading Frame 153 2

External Ids for FAM89A Gene

Previous HGNC Symbols for FAM89A Gene

  • C1orf153

Previous GeneCards Identifiers for FAM89A Gene

  • GC01M227463
  • GC01M229221
  • GC01M231154
  • GC01M201638

Summaries for FAM89A Gene

GeneCards Summary for FAM89A Gene

FAM89A (Family With Sequence Similarity 89 Member A) is a Protein Coding gene. An important paralog of this gene is FAM89B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM89A Gene

Genomics for FAM89A Gene

Regulatory Elements for FAM89A Gene

Promoters for FAM89A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around FAM89A on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM89A Gene

Chromosome:
1
Start:
231,018,958 bp from pter
End:
231,040,249 bp from pter
Size:
21,292 bases
Orientation:
Minus strand

Genomic View for FAM89A Gene

Genes around FAM89A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM89A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM89A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM89A Gene

Proteins for FAM89A Gene

  • Protein details for FAM89A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96GI7-FA89A_HUMAN
    Recommended name:
    Protein FAM89A
    Protein Accession:
    Q96GI7

    Protein attributes for FAM89A Gene

    Size:
    184 amino acids
    Molecular mass:
    19569 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM89A Gene

Proteomics data for FAM89A Gene at MOPED

Post-translational modifications for FAM89A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM89A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM89A Gene

Domains & Families for FAM89A Gene

Protein Domains for FAM89A Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM89A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96GI7

UniProtKB/Swiss-Prot:

FA89A_HUMAN :
  • Belongs to the FAM89 family.
Family:
  • Belongs to the FAM89 family.
genes like me logo Genes that share domains with FAM89A: view

No data available for Gene Families for FAM89A Gene

Function for FAM89A Gene

Phenotypes for FAM89A Gene

genes like me logo Genes that share phenotypes with FAM89A: view

Animal Model Products

CRISPR Products

miRNA for FAM89A Gene

miRTarBase miRNAs that target FAM89A

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM89A Gene

Localization for FAM89A Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM89A Gene COMPARTMENTS Subcellular localization image for FAM89A gene
Compartment Confidence
golgi apparatus 2
mitochondrion 2
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM89A Gene

Pathways & Interactions for FAM89A Gene

SuperPathways for FAM89A Gene

No Data Available

Interacting Proteins for FAM89A Gene

Gene Ontology (GO) - Biological Process for FAM89A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM89A Gene

Drugs & Compounds for FAM89A Gene

No Compound Related Data Available

Transcripts for FAM89A Gene

mRNA/cDNA for FAM89A Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(109) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM89A Gene

Family with sequence similarity 89, member A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM89A Gene

No ASD Table

Relevant External Links for FAM89A Gene

GeneLoc Exon Structure for
FAM89A
ECgene alternative splicing isoforms for
FAM89A

Expression for FAM89A Gene

mRNA expression in normal human tissues for FAM89A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FAM89A Gene

This gene is overexpressed in Adipose - Visceral (Omentum) (x5.5) and Adipose - Subcutaneous (x4.2).

Protein differential expression in normal tissues from HIPED for FAM89A Gene

This gene is overexpressed in Pancreas (54.2), Adrenal (8.1), and Placenta (6.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for FAM89A Gene



SOURCE GeneReport for Unigene cluster for FAM89A Gene Hs.38516

genes like me logo Genes that share expression patterns with FAM89A: view

Protein tissue co-expression partners for FAM89A Gene

Primer Products

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for FAM89A Gene

Orthologs for FAM89A Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM89A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM89A 35
  • 99.82 (n)
  • 99.46 (a)
ptr-mir-1182 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM89A 36
  • 88 (a)
OneToOne
FAM89A 35
  • 87.69 (n)
  • 90.34 (a)
dog
(Canis familiaris)
Mammalia FAM89A 35
  • 88.26 (n)
  • 92.05 (a)
FAM89A 36
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam89a 16
Fam89a 35
  • 85.74 (n)
  • 84.94 (a)
Fam89a 36
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FAM89A 36
  • 74 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fam89a 35
  • 85.23 (n)
  • 83.23 (a)
lizard
(Anolis carolinensis)
Reptilia FAM89A 36
  • 76 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fam89a 35
  • 65.38 (n)
  • 73.72 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.14120 35
zebrafish
(Danio rerio)
Actinopterygii fam89a 35
  • 68.85 (n)
  • 68.85 (a)
fam89a 36
  • 42 (a)
OneToOne
Species with no ortholog for FAM89A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM89A Gene

ENSEMBL:
Gene Tree for FAM89A (if available)
TreeFam:
Gene Tree for FAM89A (if available)

Paralogs for FAM89A Gene

Paralogs for FAM89A Gene

(1) SIMAP similar genes for FAM89A Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM89A: view

Variants for FAM89A Gene

Sequence variations from dbSNP and Humsavar for FAM89A Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs4339848 -- 231,031,948(+) AAGGA(A/G)GACAA intron-variant
rs4364864 -- 231,026,865(+) CACAC(C/T)CTCTC intron-variant
rs4658874 -- 231,032,152(+) AAGAT(C/T)TAACA intron-variant
rs4658876 -- 231,034,726(+) GAGAT(C/T)GCGCC intron-variant
rs4658912 -- 231,023,337(+) AGGTA(G/T)GTGGG intron-variant

Variation tolerance for FAM89A Gene

Gene Damage Index Score: 1.01; 20.75% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM89A Gene

HapMap Linkage Disequilibrium report
FAM89A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FAM89A Gene

Disorders for FAM89A Gene

Relevant External Links for FAM89A

Genetic Association Database (GAD)
FAM89A
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM89A

No disorders were found for FAM89A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM89A Gene

Publications for FAM89A Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Novel genetic variants modify the effect of smoking on carotid plaque burden in Hispanics. (PMID: 24954085) Della-Morte D. … Dong C. (J. Neurol. Sci. 2014) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3

Products for FAM89A Gene

Sources for FAM89A Gene

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