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FAM87B Gene(RNA Gene)

Family With Sequence Similarity 87 Member B

GCID:
GC01P000817
GIFtS:
25
Genes Participants
UDN Logo

Aliases for FAM87B Gene

Subcategory (RNA class) for FAM87B Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM87B Gene

  • Family With Sequence Similarity 87 Member B 2 3 5
  • Family With Sequence Similarity 87, Member B 2

External Ids for FAM87B Gene

Previous GeneCards Identifiers for FAM87B Gene

  • GC01P000796
  • GC01P000742
  • GC01U901634
  • GC08M000320
  • GC01P000022
  • GC01P000754
  • GC01P000772
  • GC01P000804

Summaries for FAM87B Gene

GeneCards Summary for FAM87B Gene

FAM87B (Family With Sequence Similarity 87 Member B) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM87B Gene

Genomics for FAM87B Gene

Products:

  1. Regulatory Element

Regulatory Elements for FAM87B Gene


Enhancers around FAM87B on UCSC Golden Path with GeneCards custom track

Promoters for FAM87B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000000085 129 201 HDAC1 ATF1 HDAC2 ZBTB21 KDM1A PRDM1 CREM

Genomic Location for FAM87B Gene

Chromosome:
1
Start:
817,371 bp from pter
End:
819,837 bp from pter
Size:
2,467 bases
Orientation:
Plus strand

Genomic View for FAM87B Gene

Genes around FAM87B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM87B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM87B Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAM87B Gene

Proteins for FAM87B Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Protein Expression for FAM87B Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for FAM87B Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM87B Gene

Domains & Families for FAM87B Gene

Suggested Antigen Peptide Sequences for FAM87B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for FAM87B Gene

Function for FAM87B Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for FAM87B Gene

GenomeRNAi human phenotypes for FAM87B:
genes like me logo Genes that share phenotypes with FAM87B: view

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM87B Gene

Localization for FAM87B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM87B Gene

Pathways & Interactions for FAM87B Gene

SuperPathways for FAM87B Gene

PathCards logo More details on SuperPathways for FAM87B
No Data Available

Interacting Proteins for FAM87B Gene

Gene Ontology (GO) - Biological Process for FAM87B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM87B Gene

Drugs & Compounds for FAM87B Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAM87B Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FAM87B Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM87B Gene

Family with sequence similarity 87, member B:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM87B Gene

No ASD Table

Relevant External Links for FAM87B Gene

GeneLoc Exon Structure for
FAM87B
ECgene alternative splicing isoforms for
FAM87B

Expression for FAM87B Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM87B Gene

mRNA expression in normal human tissues for FAM87B Gene
mRNA expression by GTEx for FAM87B Gene

Protein differential expression in normal tissues from HIPED for FAM87B Gene

This gene is overexpressed in Monocytes (30.3), Neutrophil (24.5), and Tlymphocyte (10.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for FAM87B Gene



Protein tissue co-expression partners for FAM87B Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of FAM87B Gene:

FAM87B

SOURCE GeneReport for Unigene cluster for FAM87B Gene:

Hs.568078
genes like me logo Genes that share expression patterns with FAM87B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM87B Gene

Orthologs for FAM87B Gene

Evolution for FAM87B Gene

ENSEMBL:
Gene Tree for FAM87B (if available)
TreeFam:
Gene Tree for FAM87B (if available)

No data available for Orthologs for FAM87B Gene

Paralogs for FAM87B Gene

(1) SIMAP similar genes for FAM87B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM87B: view

No data available for Paralogs for FAM87B Gene

Variants for FAM87B Gene

Sequence variations from dbSNP and Humsavar for FAM87B Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000300261 -- 819,203(+) CTGAG(C/G)ATACA nc-transcript-variant
rs1000534241 -- 818,049(+) GTGGG(A/C)CCCGA nc-transcript-variant
rs1000585149 -- 817,778(+) CAGTA(C/T)GGATT nc-transcript-variant
rs1002146606 -- 816,093(+) AACCA(C/T)TAGGT upstream-variant-2KB
rs1002219991 -- 816,539(+) GAAAC(A/G)TTTTT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FAM87B Gene

Variant ID Type Subtype PubMed ID
dgv1e55 CNV gain 17911159
dgv1n111 CNV duplication 26073780
dgv1n67 CNV gain 20364138
dgv2n111 CNV duplication 26073780
dgv3n111 CNV duplication 26073780
dgv5n100 CNV gain 25217958
esv27271 CNV gain 19812545
esv2762129 CNV gain 21179565
esv33946 CNV gain 17666407
esv3584976 CNV gain 21293372
esv3584977 CNV loss 21293372
esv3584978 CNV gain 21293372
esv3890635 CNV gain 25118596
nsv1003571 CNV loss 25217958
nsv1004962 CNV gain 25217958
nsv1005935 CNV gain 25217958
nsv10161 CNV gain+loss 18304495
nsv1159749 CNV duplication 26073780
nsv471522 CNV gain 19718026
nsv482937 CNV loss 15286789
nsv517709 CNV gain+loss 19592680
nsv945734 CNV duplication 23825009
nsv950386 CNV deletion 24416366
nsv999785 CNV gain 25217958

Relevant External Links for FAM87B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM87B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM87B Gene

Disorders for FAM87B Gene

Relevant External Links for FAM87B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM87B

No disorders were found for FAM87B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM87B Gene

Publications for FAM87B Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for FAM87B Gene

Sources for FAM87B Gene

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