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Aliases for FAM87A Gene

Subcategory (RNA class) for FAM87A Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM87A Gene

  • Family With Sequence Similarity 87 Member A 2 3 5
  • Family With Sequence Similarity 87, Member A 2

External Ids for FAM87A Gene

Previous GeneCards Identifiers for FAM87A Gene

  • GC08M000318
  • GC08U900690
  • GC08M000169

Summaries for FAM87A Gene

GeneCards Summary for FAM87A Gene

FAM87A (Family With Sequence Similarity 87 Member A) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM87A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM87A Gene

Genomics for FAM87A Gene

Regulatory Elements for FAM87A Gene

Enhancers for FAM87A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H000272 1.2 Ensembl ENCODE 5.9 +109.3 109286 3.4 FOXA2 ARID4B FEZF1 ZNF2 GLIS2 GATA2 ZNF143 KLF7 RUNX3 SP3 ENSG00000272240 ERICH1 FAM87A GC08M000267 LOC101927566
GH08H000391 1.3 Ensembl ENCODE dbSUPER 5.3 -9.1 -9111 2.4 SOX13 TFAP4 ATF1 SAP130 MAX CEBPG THRB RARA ATF7 CREM FAM87A GC08M000366 FBXO25
GH08H000376 0.8 Ensembl ENCODE dbSUPER 8.5 +5.7 5666 2.7 FAM87A TDRP LOC105377773
GH08H000275 0.7 Ensembl ENCODE 4.8 +107.0 107047 0.9 POLR2A RCOR1 ENSG00000272240 FAM87A ZNF596 LOC101927566 GC08P000305
GH08H000317 0.5 Ensembl dbSUPER 6 +65.7 65674 0.6 FAM87A LOC101927595 LOC105377773
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM87A on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM87A Gene

Genomic Locations for FAM87A Gene
chr8:375,931-383,174
(GRCh38/hg38)
Size:
7,244 bases
Orientation:
Minus strand
chr8:325,931-333,174
(GRCh37/hg19)

Genomic View for FAM87A Gene

Genes around FAM87A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM87A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM87A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM87A Gene

Proteins for FAM87A Gene

  • Protein details for FAM87A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C7U9-FA87A_HUMAN
    Recommended name:
    Protein FAM87A
    Protein Accession:
    P0C7U9

    Protein attributes for FAM87A Gene

    Size:
    286 amino acids
    Molecular mass:
    31739 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM87A Gene

Post-translational modifications for FAM87A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM87A Gene

Domains & Families for FAM87A Gene

Protein Domains for FAM87A Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM87A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P0C7U9

UniProtKB/Swiss-Prot:

FA87A_HUMAN :
  • Belongs to the FAM87 family.
Family:
  • Belongs to the FAM87 family.
genes like me logo Genes that share domains with FAM87A: view

No data available for Gene Families for FAM87A Gene

Function for FAM87A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM87A Gene

Localization for FAM87A Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM87A Gene

Membrane; Multi-pass membrane protein.

Gene Ontology (GO) - Cellular Components for FAM87A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with FAM87A: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for FAM87A Gene

Pathways & Interactions for FAM87A Gene

SuperPathways for FAM87A Gene

No Data Available

Interacting Proteins for FAM87A Gene

Gene Ontology (GO) - Biological Process for FAM87A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM87A Gene

Drugs & Compounds for FAM87A Gene

No Compound Related Data Available

Transcripts for FAM87A Gene

mRNA/cDNA for FAM87A Gene

(3) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM87A Gene

Family with sequence similarity 87, member A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM87A Gene

No ASD Table

Relevant External Links for FAM87A Gene

GeneLoc Exon Structure for
FAM87A
ECgene alternative splicing isoforms for
FAM87A

Expression for FAM87A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM87A Gene

mRNA differential expression in normal tissues according to GTEx for FAM87A Gene

This gene is overexpressed in Pancreas (x9.1), Brain - Cortex (x9.1), and Brain - Frontal Cortex (BA9) (x8.5).

NURSA nuclear receptor signaling pathways regulating expression of FAM87A Gene:

FAM87A

SOURCE GeneReport for Unigene cluster for FAM87A Gene:

Hs.591390
genes like me logo Genes that share expression patterns with FAM87A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM87A Gene

Orthologs for FAM87A Gene

Evolution for FAM87A Gene

ENSEMBL:
Gene Tree for FAM87A (if available)
TreeFam:
Gene Tree for FAM87A (if available)

No data available for Orthologs for FAM87A Gene

Paralogs for FAM87A Gene

(1) SIMAP similar genes for FAM87A Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM87A: view

No data available for Paralogs for FAM87A Gene

Variants for FAM87A Gene

Sequence variations from dbSNP and Humsavar for FAM87A Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000001285 -- 380,280(+) TGGTC(C/T)TCTGG nc-transcript-variant
rs1000676333 -- 382,423(+) CGAAG(C/T)GGGAG intron-variant
rs1000706900 -- 378,688(+) CGGCA(G/T)CGCTT nc-transcript-variant
rs1000772302 -- 382,204(+) GCACC(A/G)TATGC intron-variant
rs1001176804 -- 383,207(+) AACAT(C/T)GTAAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FAM87A Gene

Variant ID Type Subtype PubMed ID
nsv831206 CNV loss 17160897
nsv8256 CNV gain 18304495
nsv609454 CNV gain 21841781
nsv609452 CNV loss 21841781
nsv609451 CNV loss 21841781
nsv609450 CNV gain 21841781
nsv527388 CNV gain 19592680
nsv524542 CNV gain 19592680
nsv470164 CNV gain 18288195
nsv470163 CNV loss 18288195
nsv465264 CNV loss 19166990
nsv465263 CNV gain 19166990
nsv428193 CNV gain+loss 18775914
nsv1032614 CNV gain 25217958
nsv1030422 CNV gain 25217958
esv3891249 CNV loss 25118596
esv3615785 CNV gain 21293372
esv3615784 CNV gain 21293372
esv3615781 CNV gain 21293372
esv3615771 CNV gain 21293372
esv3576501 CNV gain 25503493
esv3576500 CNV gain 25503493
esv2764067 CNV loss 21179565
esv2761228 CNV gain+loss 21179565
esv2759581 CNV gain+loss 17122850
esv23262 CNV gain 19812545
dgv6793n100 CNV gain 25217958
dgv6792n100 CNV gain 25217958
dgv6791n100 CNV gain 25217958
dgv6789n100 CNV gain 25217958
dgv240e55 CNV gain 17911159
dgv1352e214 CNV loss 21293372

Relevant External Links for FAM87A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM87A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM87A Gene

Disorders for FAM87A Gene

Relevant External Links for FAM87A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM87A

No disorders were found for FAM87A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM87A Gene

Publications for FAM87A Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60
  2. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C … Lander ES (Nature 2006) 4 60
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 60

Products for FAM87A Gene

Sources for FAM87A Gene

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