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Aliases for FAM87A Gene

Subcategory (RNA class) for FAM87A Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for FAM87A Gene

  • Family With Sequence Similarity 87, Member A 2 3

External Ids for FAM87A Gene

ORGUL Members for FAM87A Gene

Summaries for FAM87A Gene

GeneCards Summary for FAM87A Gene

FAM87A (Family With Sequence Similarity 87, Member A) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM87A Gene

Genomics for FAM87A Gene

Genomic Location for FAM87A Gene

Start:
375,931 bp from pter
End:
383,174 bp from pter
Size:
7,244 bases
Orientation:
Minus strand

Genomic View for FAM87A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM87A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM87A Gene

No data available for Regulatory Elements for FAM87A Gene

Proteins for FAM87A Gene

  • Protein details for FAM87A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C7U9-FA87A_HUMAN
    Recommended name:
    Protein FAM87A
    Protein Accession:
    P0C7U9
    Secondary Accessions:

    Protein attributes for FAM87A Gene

    Size:
    286 amino acids
    Molecular mass:
    31739 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM87A Gene

Proteomics data for FAM87A Gene at MOPED

Post-translational modifications for FAM87A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM87A Gene

Domains for FAM87A Gene

Gene Families for FAM87A Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for FAM87A Gene

ProtoNet:

UniProtKB/Swiss-Prot:

FA87A_HUMAN
Family:
  • Belongs to the FAM87 family.:
    • P0C7U9
genes like me logo Genes that share domains with FAM87A: view

Function for FAM87A Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM87A Gene

Localization for FAM87A Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM87A Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM87A Gene COMPARTMENTS Subcellular localization image for FAM87A gene
Compartment Confidence
extracellular 3
plasma membrane 2
peroxisome 1

Gene Ontology (GO) - Cellular Components for FAM87A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with FAM87A: view

Pathways for FAM87A Gene

SuperPathways for FAM87A Gene

No Data Available

Interacting Proteins for FAM87A Gene

Gene Ontology (GO) - Biological Process for FAM87A Gene

None

No data available for Pathways by source for FAM87A Gene

Transcripts for FAM87A Gene

mRNA/cDNA for FAM87A Gene

(3) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM87A Gene

Family with sequence similarity 87, member A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM87A Gene

No ASD Table

Relevant External Links for FAM87A Gene

GeneLoc Exon Structure for
FAM87A
ECgene alternative splicing isoforms for
FAM87A

Expression for FAM87A Gene

mRNA expression in normal human tissues for FAM87A Gene

mRNA differential expression in normal tissues according to GTEx for FAM87A Gene

This gene is overexpressed in Pancreas (9.1), Brain - Cortex (9.1), and Brain - Frontal Cortex (BA9) (8.5).

SOURCE GeneReport for Unigene cluster for FAM87A Gene Hs.591390

genes like me logo Genes that share expressions with FAM87A: view

Orthologs for FAM87A Gene

Evolution for FAM87A Gene

ENSEMBL:
Gene Tree for FAM87A (if available)
TreeFam:
Gene Tree for FAM87A (if available)

No data available for Orthologs for FAM87A Gene

Paralogs for FAM87A Gene

Selected SIMAP similar genes for FAM87A Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM87A: view

No data available for Paralogs for FAM87A Gene

Variants for FAM87A Gene

Sequence variations from dbSNP and Humsavar for FAM87A Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs727785 -- 383,555(-) ACAGC(G/T)CACTG upstream-variant-2KB
rs727786 -- 383,500(-) AGATA(G/T)GAAAA upstream-variant-2KB
rs935564 -- 380,846(-) TCTCA(C/T)AGTGC intron-variant
rs1550950 -- 384,709(-) GAGTA(C/T)AGTTG upstream-variant-2KB
rs1979081 -- 384,288(-) CTCCC(A/C)AACGT upstream-variant-2KB

Relevant External Links for FAM87A Gene

HapMap Linkage Disequilibrium report
FAM87A

No data available for Structural Variations from Database of Genomic Variants (DGV) for FAM87A Gene

Disorders for FAM87A Gene

No disorders were found for FAM87A Gene.

No data available for UniProtKB/Swiss-Prot for FAM87A Gene

Publications for FAM87A Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  3. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C. … Lander E.S. (Nature 2006) 4

Products for FAM87A Gene

Sources for FAM87A Gene

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