Aliases for FAM87A Gene
Subcategory (RNA class) for FAM87A Gene
non-coding RNA
Quality Score for this RNA gene is
3
Aliases for FAM87A Gene
External Ids for FAM87A Gene
- HGNC: 27233
- Entrez Gene: 157693
- Ensembl: ENSG00000182366
- UniProtKB: P0C7U9
Previous GeneCards Identifiers for FAM87A Gene
- GC08M000318
- GC08U900690
- GC08M000169
Summaries for FAM87A Gene
GeneCards Summary for FAM87A Gene
FAM87A (Family With Sequence Similarity 87 Member A) is an RNA Gene, and is affiliated with the non-coding RNA class.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM87A Gene
Genomics for FAM87A Gene
Regulatory Elements for FAM87A Gene
Enhancers for FAM87A Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH08G000376 | 1.1 | Ensembl ENCODE dbSUPER | 8.5 | +5.7 | 5666 | 2.7 | FOSL1 RFX1 ATF3 ZNF10 PBX2 RARA | FAM87A TDRP LOC105377773 |
| GH08G000272 | 1.2 | Ensembl ENCODE | 5.9 | +109.3 | 109286 | 3.4 | FOXA2 ZNF133 ARID4B FEZF1 ZNF2 GLIS2 GATA2 ZNF143 KLF7 ZNF263 | ENSG00000272240 ERICH1 FAM87A LOC101927566 GC08M000267 |
| GH08G000391 | 1.3 | Ensembl ENCODE dbSUPER | 5.3 | -9.1 | -9111 | 2.4 | SOX13 TFAP4 ESRRA ATF1 SAP130 MAX CEBPG THRB RARA CREM | FAM87A GC08M000366 FBXO25 |
| GH08G000275 | 0.7 | Ensembl ENCODE | 4.8 | +107.0 | 107047 | 0.9 | CTCF REST ATF2 | ENSG00000272240 FAM87A ZNF596 LOC101927566 GC08P000305 |
| GH08G000317 | 0.5 | Ensembl dbSUPER | 6 | +65.7 | 65674 | 0.6 | FAM87A LOC105377773 LOC101927595 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around FAM87A on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for FAM87A Gene
- Chromosome:
- 8
- Start:
- 375,931 bp from pter
- End:
- 383,174 bp from pter
- Size:
- 7,244 bases
- Orientation:
- Minus strand
Genomic View for FAM87A Gene
Genes around FAM87A on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 8p23.3 by Ensembl
- 8p23.3 by Entrez Gene
- 8p23.3 by HGNC
FAM87A Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for FAM87A Gene
Proteins for FAM87A Gene
-
Protein details for FAM87A Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P0C7U9-FA87A_HUMAN
- Recommended name:
- Protein FAM87A
- Protein Accession:
- P0C7U9
Protein attributes for FAM87A Gene
- Size:
- 286 amino acids
- Molecular mass:
- 31739 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for FAM87A Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for FAM87A
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for FAM87A
- Origene Custom Protein Services for FAM87A
- Search GeneTex for Proteins for FAM87A
Assay Products
No data available for DME Specific Peptides for FAM87A Gene
Domains & Families for FAM87A Gene
Protein Domains for FAM87A Gene
- ProtoNet:
Suggested Antigen Peptide Sequences for FAM87A Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
P0C7U9- Family:
-
- Belongs to the FAM87 family.
No data available for Gene Families for FAM87A Gene
Function for FAM87A Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for FAM87A
CRISPR Products
- Browse CRISPR knockouts for FAM87A
miRNA Products
- Search ViGene Biosciences for FAM87A
Inhibitory RNA Products
- Search ViGene Biosciences for FAM87A
Cell Line Products
- Search ViGene Biosciences for FAM87A
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM87A Gene
Localization for FAM87A Gene
Subcellular locations from UniProtKB/Swiss-Prot for FAM87A Gene
- Membrane; Multi-pass membrane protein.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0016021 | integral component of membrane | IEA | -- |
No data available for Subcellular locations from COMPARTMENTS for FAM87A Gene
Transcripts for FAM87A Gene
mRNA/cDNA for FAM87A Gene
- (3) Additional mRNA sequences :
- (5) Selected AceView cDNA sequences:
- (4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for FAM87A Gene
CRISPR Products
- Browse CRISPR knockouts for FAM87A
miRNA Products
- Search ViGene Biosciences for FAM87A
Inhibitory RNA Products
- Search ViGene Biosciences for FAM87A
Flow Cytometry Products
Expression for FAM87A Gene
mRNA differential expression in normal tissues according to GTEx for FAM87A Gene
This gene is overexpressed in Pancreas (x9.1), Brain - Cortex (x9.1), and Brain - Frontal Cortex (BA9) (x8.5).
NURSA nuclear receptor signaling pathways regulating expression of FAM87A Gene:
FAM87ASOURCE GeneReport for Unigene cluster for FAM87A Gene:
Hs.591390Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM87A Gene
Orthologs for FAM87A Gene
No data available for Orthologs for FAM87A Gene
Paralogs for FAM87A Gene
(1) SIMAP similar genes for FAM87A Gene using alignment to 1 proteins:
No data available for Paralogs for FAM87A Gene
Variants for FAM87A Gene
| SNP ID | Clin | Chr 08 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000001285 | -- | 380,280(+) | TGGTC(C/T)TCTGG | nc-transcript-variant | |
| rs1000676333 | -- | 382,423(+) | CGAAG(C/T)GGGAG | intron-variant | |
| rs1000706900 | -- | 378,688(+) | CGGCA(G/T)CGCTT | nc-transcript-variant | |
| rs1000772302 | -- | 382,204(+) | GCACC(A/G)TATGC | intron-variant | |
| rs1001176804 | -- | 383,207(+) | AACAT(C/T)GTAAT | upstream-variant-2KB |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1352e214 | CNV | loss | 21293372 |
| dgv240e55 | CNV | gain | 17911159 |
| dgv6789n100 | CNV | gain | 25217958 |
| dgv6791n100 | CNV | gain | 25217958 |
| dgv6792n100 | CNV | gain | 25217958 |
| dgv6793n100 | CNV | gain | 25217958 |
| esv23262 | CNV | gain | 19812545 |
| esv2759581 | CNV | gain+loss | 17122850 |
| esv2761228 | CNV | gain+loss | 21179565 |
| esv2764067 | CNV | loss | 21179565 |
| esv3576500 | CNV | gain | 25503493 |
| esv3576501 | CNV | gain | 25503493 |
| esv3615771 | CNV | gain | 21293372 |
| esv3615781 | CNV | gain | 21293372 |
| esv3615784 | CNV | gain | 21293372 |
| esv3615785 | CNV | gain | 21293372 |
| esv3891249 | CNV | loss | 25118596 |
| nsv1030422 | CNV | gain | 25217958 |
| nsv1032614 | CNV | gain | 25217958 |
| nsv428193 | CNV | gain+loss | 18775914 |
| nsv465263 | CNV | gain | 19166990 |
| nsv465264 | CNV | loss | 19166990 |
| nsv470163 | CNV | loss | 18288195 |
| nsv470164 | CNV | gain | 18288195 |
| nsv524542 | CNV | gain | 19592680 |
| nsv527388 | CNV | gain | 19592680 |
| nsv609450 | CNV | gain | 21841781 |
| nsv609451 | CNV | loss | 21841781 |
| nsv609452 | CNV | loss | 21841781 |
| nsv609454 | CNV | gain | 21841781 |
| nsv8256 | CNV | gain | 18304495 |
| nsv831206 | CNV | loss | 17160897 |
Relevant External Links for FAM87A Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- FAM87A
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM87A Gene
Disorders for FAM87A Gene
Relevant External Links for FAM87A
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- FAM87A
No disorders were found for FAM87A Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM87A Gene
Publications for FAM87A Gene
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
- DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C. … Lander E.S. (Nature 2006) 4 64
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
Products for FAM87A Gene
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- Browse R&D Systems for biochemical assays
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- Browse Proteins and Enzymes
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- Browse cDNA Clones
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- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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- GenScript: Custom all cDNA clones Services for FAM87A
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- Browse GenScript CRISPR for FAM87A
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- CloneReady with Over 120,000 Genes
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- Gene Mutant Library, Variants up to 10^11
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- Browse Sino Biological cDNA Clones
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- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
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- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for FAM87A
- VectorBuilder custom plasmid, inducible vectors for FAM87A
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for FAM87A
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for FAM87A Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer