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FAM86JP Gene(Pseudogene)

Family With Sequence Similarity 86 Member J, Pseudogene

GCID:
GC03P125916
GIFtS:
20
Genes Participants
UDN Logo

Aliases for FAM86JP Gene

Aliases for FAM86JP Gene

  • Family With Sequence Similarity 86 Member J, Pseudogene 2 5
  • Family With Sequence Similarity 86, Member J, Pseudogene 2
  • Family With Sequence Similarity 86, Member A Pseudogene 3

External Ids for FAM86JP Gene

Previous GeneCards Identifiers for FAM86JP Gene

  • GC03P125637

Summaries for FAM86JP Gene

GeneCards Summary for FAM86JP Gene

FAM86JP (Family With Sequence Similarity 86 Member J, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM86JP Gene

Genomics for FAM86JP Gene

Products:

  1. Regulatory Element

Regulatory Elements for FAM86JP Gene

Enhancers for FAM86JP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G125989 1.6 FANTOM5 Ensembl ENCODE 34.1 +74.1 74100 1.8 ARID4B SIN3A RAD21 ZBTB40 YY1 ETS1 ELK1 THAP11 SP3 ZNF362 ALG1L FAM86JP ROPN1B SLC41A3 CFAP100 ZXDC PIR42058 ENSG00000248607
GH03G125914 1.1 ENCODE 48.9 +0.1 71 4.7 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 ZNF143 FAM86JP LOC101927056 ALG1L
GH03G125911 1.1 Ensembl ENCODE 43.1 -4.2 -4196 1.2 INSM2 KLF17 ZEB1 GLIS2 POLR3A ELK1 FOS EGR2 ELK4 CEBPB FAM86JP LOC101927056 ENPP7P4 ENSG00000248787 GC03P125912
GH03G126055 1.2 Ensembl ENCODE 35.7 +141.4 141359 4.1 ELF3 TBP ARID4B BRCA1 RAD21 ZNF48 ZBTB40 RARA ZNF366 RCOR1 ALG1L FAM86JP SLC41A3 ALDH1L1-AS1 OR7E29P ENSG00000248607 LOC105374085
GH03G125835 1.2 FANTOM5 Ensembl ENCODE 31.5 -79.9 -79874 2.5 CTCF MXI1 RFX1 FOS BMI1 MAFK EP300 FAM86JP LOC101927056 ALG1L ENPP7P4 SNRPCP11
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM86JP on UCSC Golden Path with GeneCards custom track

Promoters for FAM86JP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000157789 -501 2201 HDGF PKNOX1 ATF1 ARID4B SIN3A DMAP1 ZNF2 ZNF48 ZBTB7B YY1

Genomic Location for FAM86JP Gene

Chromosome:
3
Start:
125,916,601 bp from pter
End:
125,930,024 bp from pter
Size:
13,424 bases
Orientation:
Plus strand

Genomic View for FAM86JP Gene

Genes around FAM86JP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM86JP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM86JP Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAM86JP Gene

Proteins for FAM86JP Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for FAM86JP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q05BU3-F86JP_HUMAN
    Recommended name:
    Putative protein FAM86JP
    Protein Accession:
    Q05BU3
    Secondary Accessions:
    • Q8IW37

    Protein attributes for FAM86JP Gene

    Size:
    40 amino acids
    Molecular mass:
    4003 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM86JP Gene

Protein Expression for FAM86JP Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for FAM86JP Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM86JP Gene

Domains & Families for FAM86JP Gene

Protein Domains for FAM86JP Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FAM86JP: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM86JP Gene

Function for FAM86JP Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM86JP Gene

Localization for FAM86JP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM86JP Gene

Pathways & Interactions for FAM86JP Gene

SuperPathways for FAM86JP Gene

PathCards logo More details on SuperPathways for FAM86JP
No Data Available

Interacting Proteins for FAM86JP Gene

Gene Ontology (GO) - Biological Process for FAM86JP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM86JP Gene

Drugs & Compounds for FAM86JP Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAM86JP Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FAM86JP Gene

(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM86JP Gene

Family with sequence similarity 86, member A pseudogene:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM86JP Gene

No ASD Table

Relevant External Links for FAM86JP Gene

GeneLoc Exon Structure for
FAM86JP
ECgene alternative splicing isoforms for
FAM86JP

Expression for FAM86JP Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM86JP Gene

mRNA expression in normal human tissues for FAM86JP Gene
mRNA expression by GTEx for FAM86JP Gene

Protein differential expression in normal tissues from HIPED for FAM86JP Gene

This gene is overexpressed in Stomach (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM86JP Gene



Protein tissue co-expression partners for FAM86JP Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of FAM86JP Gene:

FAM86JP

SOURCE GeneReport for Unigene cluster for FAM86JP Gene:

Hs.553949
genes like me logo Genes that share expression patterns with FAM86JP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM86JP Gene

Orthologs for FAM86JP Gene

Evolution for FAM86JP Gene

ENSEMBL:
Gene Tree for FAM86JP (if available)
TreeFam:
Gene Tree for FAM86JP (if available)

No data available for Orthologs for FAM86JP Gene

Paralogs for FAM86JP Gene

No data available for Paralogs for FAM86JP Gene

Variants for FAM86JP Gene

Sequence variations from dbSNP and Humsavar for FAM86JP Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000088197 -- 125,922,279(+) TCAGC(C/T)TCTAG intron-variant
rs1000530595 -- 125,917,095(+) ACGTC(C/G)TCCTG intron-variant, upstream-variant-2KB
rs1000737242 -- 125,928,594(+) ACTGT(A/G)GGACT nc-transcript-variant
rs1000801912 -- 125,916,800(+) GAAGC(C/G)CCCGA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1001145202 -- 125,921,188(+) GGCTG(G/T)CCCAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM86JP Gene

Variant ID Type Subtype PubMed ID
esv2759174 CNV loss 17122850
nsv1011457 CNV gain 25217958
nsv10313 CNV loss 18304495
nsv1160975 CNV duplication 26073780
nsv591465 CNV gain 21841781
nsv829716 CNV gain+loss 17160897
nsv967058 CNV duplication 23825009

Relevant External Links for FAM86JP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM86JP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM86JP Gene

Disorders for FAM86JP Gene

Relevant External Links for FAM86JP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM86JP

No disorders were found for FAM86JP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM86JP Gene

Publications for FAM86JP Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4 64
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FAM86JP Gene

Sources for FAM86JP Gene

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