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Aliases for FAM86HP Gene

Aliases for FAM86HP Gene

  • Family With Sequence Similarity 86 Member H, Pseudogene 2 5
  • Family With Sequence Similarity 86, Member H, Pseudogene 2
  • Family With Sequence Similarity 86, Member A Pseudogene 3

External Ids for FAM86HP Gene

Previous GeneCards Identifiers for FAM86HP Gene

  • GC03M129819

Summaries for FAM86HP Gene

GeneCards Summary for FAM86HP Gene

FAM86HP (Family With Sequence Similarity 86 Member H, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM86HP Gene

Genomics for FAM86HP Gene

Regulatory Elements for FAM86HP Gene

Enhancers for FAM86HP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F130109 1 ENCODE 26.4 -0.2 -248 3.7 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 YY1 GLIS2 ZNF207 FOS COL6A4P2 FAM86HP ENSG00000249846 LINC02021
GH03F130093 1 Ensembl ENCODE 23.9 +16.3 16272 4.0 PKNOX1 TAL1 MAX ZNF48 FOXK2 EED PRDM10 FOS JUNB CHD1 COL6A4P2 FAM86HP ENSG00000249846 ALG1L2 LINC02014
GH03F130097 0.9 Ensembl ENCODE 26 +12.6 12621 1.8 SCRT1 CTCF ZNF654 NR2F1 REST ZBTB40 SCRT2 KDM1A COL6A4P2 ENSG00000249846 FAM86HP LINC02014
GH03F130122 0.4 ENCODE 26 -12.2 -12175 2.2 MNT ZBTB20 COL6A4P2 ENSG00000249846 FAM86HP PIR52333 LOC105374103
GH03F129692 1 ENCODE 4.8 +417.0 416982 3.0 PKNOX1 ATF1 ARNT ARID4B SIN3A YY1 ZNF121 SLC30A9 FOS JUNB FAM86HP ENSG00000203644 PIR61156 GC03P129807
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM86HP on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM86HP Gene

Chromosome:
3
Start:
130,097,782 bp from pter
End:
130,111,472 bp from pter
Size:
13,691 bases
Orientation:
Minus strand

Genomic View for FAM86HP Gene

Genes around FAM86HP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM86HP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM86HP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM86HP Gene

Proteins for FAM86HP Gene

Post-translational modifications for FAM86HP Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM86HP Gene

Domains & Families for FAM86HP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM86HP Gene

Function for FAM86HP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM86HP Gene

Localization for FAM86HP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM86HP Gene

Pathways & Interactions for FAM86HP Gene

SuperPathways for FAM86HP Gene

No Data Available

Interacting Proteins for FAM86HP Gene

Gene Ontology (GO) - Biological Process for FAM86HP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM86HP Gene

Transcripts for FAM86HP Gene

mRNA/cDNA for FAM86HP Gene

(5) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM86HP Gene

Family with sequence similarity 86, member A pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM86HP Gene

No ASD Table

Relevant External Links for FAM86HP Gene

GeneLoc Exon Structure for
FAM86HP
ECgene alternative splicing isoforms for
FAM86HP

Expression for FAM86HP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM86HP Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM86HP Gene:

FAM86HP

SOURCE GeneReport for Unigene cluster for FAM86HP Gene:

Hs.123633
genes like me logo Genes that share expression patterns with FAM86HP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM86HP Gene

Orthologs for FAM86HP Gene

Evolution for FAM86HP Gene

ENSEMBL:
Gene Tree for FAM86HP (if available)
TreeFam:
Gene Tree for FAM86HP (if available)

No data available for Orthologs for FAM86HP Gene

Paralogs for FAM86HP Gene

No data available for Paralogs for FAM86HP Gene

Variants for FAM86HP Gene

Sequence variations from dbSNP and Humsavar for FAM86HP Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1061802 -- 130,113,149(+) AACTC(A/C)ATTTG intron-variant, upstream-variant-2KB
rs10934907 -- 130,111,650(+) GAGGG(C/T)GGGGC upstream-variant-2KB
rs111239915 -- 130,106,034(+) ATCAA(-/AC)ACAGA intron-variant
rs111258161 -- 130,108,126(+) GACTA(G/T)AGGCG intron-variant
rs111270043 -- 130,102,072(+) TGGCT(G/T)CCAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM86HP Gene

Variant ID Type Subtype PubMed ID
nsv967062 CNV duplication 23825009
nsv829723 CNV gain 17160897
nsv822252 CNV gain 20364138
nsv820609 CNV deletion 20802225
nsv508242 CNV deletion 20534489
nsv437340 CNV loss 16327808
nsv433361 CNV gain 18776910
nsv428420 CNV gain 18775914
nsv4001 CNV deletion 18451855
nsv1160983 CNV deletion 26073780
nsv10324 CNV gain 18304495
nsv1013049 CNV gain+loss 25217958
nsv1012843 CNV gain 25217958
nsv1001109 CNV loss 25217958
esv3893773 CNV gain 25118596
esv3562532 CNV deletion 23714750
esv2763722 CNV gain+loss 21179565
esv2759177 CNV gain+loss 17122850
esv2725911 CNV deletion 23290073
esv2725909 CNV deletion 23290073
esv24757 CNV gain+loss 19812545
esv2455918 CNV loss 19546169
dgv4900n100 CNV gain 25217958
dgv4899n100 CNV loss 25217958
dgv4898n100 CNV loss 25217958
dgv4894n100 CNV gain 25217958
dgv4893n100 CNV gain+loss 25217958
dgv4892n100 CNV loss 25217958
dgv4891n100 CNV gain 25217958
dgv4885n100 CNV gain 25217958
dgv4883n100 CNV gain 25217958
dgv4874n100 CNV gain 25217958
dgv4873n100 CNV gain+loss 25217958
dgv4869n100 CNV gain+loss 25217958
dgv4868n100 CNV gain 25217958
dgv4866n100 CNV gain 25217958
dgv4864n100 CNV gain 25217958
dgv4861n100 CNV gain 25217958
dgv180n111 CNV deletion 26073780

Relevant External Links for FAM86HP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM86HP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM86HP Gene

Disorders for FAM86HP Gene

Relevant External Links for FAM86HP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM86HP

No disorders were found for FAM86HP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM86HP Gene

Publications for FAM86HP Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for FAM86HP Gene

Sources for FAM86HP Gene

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