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Aliases for FAM86FP Gene

Aliases for FAM86FP Gene

  • Family With Sequence Similarity 86 Member F, Pseudogene 2 5
  • Family With Sequence Similarity 86, Member F, Pseudogene 2
  • Family With Sequence Similarity 86, Member A Pseudogene 3

External Ids for FAM86FP Gene

Previous GeneCards Identifiers for FAM86FP Gene

  • GC12M008384

Summaries for FAM86FP Gene

GeneCards Summary for FAM86FP Gene

FAM86FP (Family With Sequence Similarity 86 Member F, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM86FP Gene

Genomics for FAM86FP Gene

Regulatory Elements for FAM86FP Gene

Enhancers for FAM86FP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F008241 1 ENCODE 5.3 -0.1 -57 2.7 HDGF PKNOX1 ATF1 ARID4B SIN3A YY1 GLIS2 ZNF143 SP3 SP5 ENSG00000256552 FAM86FP LINC00612 GC12P008268
GH12F008247 0.8 Ensembl 5.9 -4.3 -4253 0.4 PKNOX1 JUN INSM2 FEZF1 ZEB1 HIC1 ZNF664 ZNF335 GLIS2 PATZ1 FAM86FP GC12P008268
GH12F008237 1.1 Ensembl ENCODE 0.4 +5.4 5391 0.3 CTCF SAP130 ZFP64 KLF17 ARID4B ZIC2 ZNF2 RAD21 HBP1 TEAD3 LOC101927905 FAM86FP
GH12F008235 0.4 ENCODE 0.4 +7.0 7008 1.1 BHLHE40 USF2 LOC101927905 FAM86FP
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM86FP on UCSC Golden Path with GeneCards custom track

Promoters for FAM86FP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000426016 -352 2601 HDGF PKNOX1 ARID4B SIN3A YY1 GLIS2 ZNF143 SP3 SP5 MXD4

Genomic Location for FAM86FP Gene

Chromosome:
12
Start:
8,231,049 bp from pter
End:
8,242,948 bp from pter
Size:
11,900 bases
Orientation:
Minus strand

Genomic View for FAM86FP Gene

Genes around FAM86FP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM86FP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM86FP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM86FP Gene

Proteins for FAM86FP Gene

Post-translational modifications for FAM86FP Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM86FP Gene

Domains & Families for FAM86FP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM86FP Gene

Function for FAM86FP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM86FP Gene

Localization for FAM86FP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM86FP Gene

Pathways & Interactions for FAM86FP Gene

SuperPathways for FAM86FP Gene

No Data Available

Interacting Proteins for FAM86FP Gene

Gene Ontology (GO) - Biological Process for FAM86FP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM86FP Gene

Transcripts for FAM86FP Gene

mRNA/cDNA for FAM86FP Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM86FP Gene

Family with sequence similarity 86, member A pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM86FP Gene

No ASD Table

Relevant External Links for FAM86FP Gene

GeneLoc Exon Structure for
FAM86FP
ECgene alternative splicing isoforms for
FAM86FP

Expression for FAM86FP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM86FP Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM86FP Gene:

FAM86FP

SOURCE GeneReport for Unigene cluster for FAM86FP Gene:

Hs.661749
genes like me logo Genes that share expression patterns with FAM86FP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM86FP Gene

Orthologs for FAM86FP Gene

Evolution for FAM86FP Gene

ENSEMBL:
Gene Tree for FAM86FP (if available)
TreeFam:
Gene Tree for FAM86FP (if available)

No data available for Orthologs for FAM86FP Gene

Paralogs for FAM86FP Gene

No data available for Paralogs for FAM86FP Gene

Variants for FAM86FP Gene

Sequence variations from dbSNP and Humsavar for FAM86FP Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1063177 -- 8,232,547(-) CTACG(A/G)AGAGC nc-transcript-variant
rs10770375 -- 8,244,298(+) TTGAA(A/G)TACTT upstream-variant-2KB
rs10770376 -- 8,244,329(+) AGTAC(A/G)ATAGC upstream-variant-2KB
rs10770377 -- 8,244,352(+) GAAGG(C/T)GAGCA upstream-variant-2KB
rs10841033 -- 8,230,951(+) AGGTG(C/T)GTGGG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for FAM86FP Gene

Variant ID Type Subtype PubMed ID
dgv1358n100 CNV gain 25217958
dgv1359n100 CNV gain 25217958
dgv1360n100 CNV gain 25217958
dgv2339n54 CNV gain 21841781
dgv247e214 CNV gain 21293372
esv2523633 CNV loss 19546169
esv2668107 CNV deletion 23128226
esv2759877 CNV gain+loss 17122850
esv2760766 CNV gain 21179565
esv2871568 CNV duplication 24192839
esv29886 CNV gain+loss 19812545
esv3628460 CNV loss 21293372
nsv1159957 CNV duplication 26073780
nsv1159958 CNV duplication 26073780
nsv428270 CNV gain 18775914
nsv433419 CNV gain 18776910
nsv557337 CNV loss 21841781
nsv557338 CNV gain 21841781
nsv557339 CNV loss 21841781
nsv826226 CNV gain 20364138
nsv952794 CNV deletion 24416366
nsv973015 CNV duplication 23825009

Relevant External Links for FAM86FP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM86FP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM86FP Gene

Disorders for FAM86FP Gene

Relevant External Links for FAM86FP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM86FP

No disorders were found for FAM86FP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM86FP Gene

Publications for FAM86FP Gene

No publications were found for FAM86FP Gene.

Products for FAM86FP Gene

Sources for FAM86FP Gene

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