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FAM86EP Gene(Pseudogene)

Family With Sequence Similarity 86 Member E, Pseudogene

GCID:
GC04M003947
GIFtS:
18
Genes Participants
UDN Logo

Aliases for FAM86EP Gene

Aliases for FAM86EP Gene

  • Family With Sequence Similarity 86 Member E, Pseudogene 2 5
  • Family With Sequence Similarity 86, Member E, Pseudogene 2
  • Family With Sequence Similarity 86, Member A Pseudogene 3

External Ids for FAM86EP Gene

Summaries for FAM86EP Gene

GeneCards Summary for FAM86EP Gene

FAM86EP (Family With Sequence Similarity 86 Member E, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM86EP Gene

Genomics for FAM86EP Gene

Products:

  1. Regulatory Element

Regulatory Elements for FAM86EP Gene

Enhancers for FAM86EP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G003290 1.6 FANTOM5 ENCODE dbSUPER 13.2 +662.8 662758 3.6 HDGF ATF1 ARID4B SIN3A FEZF1 ZNF48 ZNF121 GLIS2 ELK1 ZNF207 FAM86EP RGS12 GRK4 GC04M003284
GH04G004540 1.5 FANTOM5 ENCODE 13.2 -586.4 -586414 2.6 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 SP3 TMEM128 STX18-AS1 FAM86EP NSG1 STX18 ZBTB49 RPS7P15
GH04G003531 1 ENCODE 13.2 +423.1 423078 1.6 ARID4B SIN3A DMAP1 ZNF48 YY1 ETS1 GLIS2 ZNF143 SP3 SP5 LRPAP1 FAM86EP ENSG00000261643 PIR35299
GH04G003953 1 ENCODE 12.1 +0.5 451 3.9 HDGF ATF1 PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 GLIS2 ZNF207 ENSG00000271977 FAM86EP ENPP7P9 GC04P003954 ENSG00000253917
GH04G003924 1 FANTOM5 ENCODE 6.5 +27.3 27294 6.4 FOXA2 PKNOX1 NFIB FOXA1 NFIC FOXK2 NFE2 PRDM1 SPI1 ENSG00000271977 FAM86EP ENPP7P9 LRPAP1 ADRA2C LOC100420818 ALG1L7P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM86EP on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM86EP Gene

Chromosome:
4
Start:
3,941,760 bp from pter
End:
3,955,428 bp from pter
Size:
13,669 bases
Orientation:
Minus strand

Genomic View for FAM86EP Gene

Genes around FAM86EP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM86EP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM86EP Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAM86EP Gene

Proteins for FAM86EP Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for FAM86EP Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM86EP Gene

Domains & Families for FAM86EP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM86EP Gene

Function for FAM86EP Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM86EP Gene

Localization for FAM86EP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM86EP Gene

Pathways & Interactions for FAM86EP Gene

SuperPathways for FAM86EP Gene

PathCards logo More details on SuperPathways for FAM86EP
No Data Available

Interacting Proteins for FAM86EP Gene

Gene Ontology (GO) - Biological Process for FAM86EP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM86EP Gene

Drugs & Compounds for FAM86EP Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAM86EP Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FAM86EP Gene

(2) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM86EP Gene

Family with sequence similarity 86, member A pseudogene:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM86EP Gene

No ASD Table

Relevant External Links for FAM86EP Gene

GeneLoc Exon Structure for
FAM86EP
ECgene alternative splicing isoforms for
FAM86EP

Expression for FAM86EP Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM86EP Gene

mRNA expression in normal human tissues for FAM86EP Gene
mRNA expression by GTEx for FAM86EP Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM86EP Gene:

FAM86EP

SOURCE GeneReport for Unigene cluster for FAM86EP Gene:

Hs.591720
genes like me logo Genes that share expression patterns with FAM86EP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM86EP Gene

Orthologs for FAM86EP Gene

Evolution for FAM86EP Gene

ENSEMBL:
Gene Tree for FAM86EP (if available)
TreeFam:
Gene Tree for FAM86EP (if available)

No data available for Orthologs for FAM86EP Gene

Paralogs for FAM86EP Gene

No data available for Paralogs for FAM86EP Gene

Variants for FAM86EP Gene

Sequence variations from dbSNP and Humsavar for FAM86EP Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000015118 -- 3,943,980(+) ACAGA(A/G)TGAGA intron-variant
rs1000084471 -- 3,947,047(+) TTTGG(G/T)CCATT intron-variant
rs1000199218 -- 3,953,409(+) ACTTA(G/T)CTGCC intron-variant
rs1000239558 -- 3,956,416(+) CTTGG(A/G)CCAAC nc-transcript-variant, upstream-variant-2KB
rs10003461 -- 3,955,788(+) TTAGG(G/T)TGGGG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FAM86EP Gene

Variant ID Type Subtype PubMed ID
dgv5084n100 CNV loss 25217958
dgv5085n100 CNV gain 25217958
dgv5087n100 CNV gain+loss 25217958
dgv5088n100 CNV gain 25217958
dgv5089n100 CNV loss 25217958
dgv5090n100 CNV gain 25217958
esv2726960 CNV deletion 23290073
esv2759219 CNV gain 17122850
esv2760820 CNV loss 21179565
esv2763838 CNV gain+loss 21179565
esv34196 OTHER inversion 12058347
esv3569248 CNV loss 25503493
esv3575675 CNV gain 25503493
esv3599439 CNV loss 21293372
esv3599440 CNV loss 21293372
esv3599441 CNV gain 21293372
nsv1000167 CNV loss 25217958
nsv517008 CNV gain+loss 19592680
nsv967721 CNV duplication 23825009
nsv997980 CNV gain 25217958

Relevant External Links for FAM86EP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM86EP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM86EP Gene

Disorders for FAM86EP Gene

Relevant External Links for FAM86EP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM86EP

No disorders were found for FAM86EP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM86EP Gene

Publications for FAM86EP Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for FAM86EP Gene

Sources for FAM86EP Gene

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