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FAM86DP Gene(Pseudogene)

Family With Sequence Similarity 86 Member D, Pseudogene

GCID:
GC03M075472
GIFtS:
19
Genes Participants
UDN Logo

Aliases for FAM86DP Gene

Aliases for FAM86DP Gene

  • Family With Sequence Similarity 86 Member D, Pseudogene 2 3 5
  • Family With Sequence Similarity 86, Member D, Pseudogene 2
  • Family With Sequence Similarity 86, Member D 2
  • FAM86D 3

External Ids for FAM86DP Gene

Previous HGNC Symbols for FAM86DP Gene

  • FAM86D

Summaries for FAM86DP Gene

GeneCards Summary for FAM86DP Gene

FAM86DP (Family With Sequence Similarity 86 Member D, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM86DP Gene

Genomics for FAM86DP Gene

Products:

  1. Regulatory Element

Regulatory Elements for FAM86DP Gene

Enhancers for FAM86DP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G075432 1 ENCODE 11.1 +0.6 612 4.3 HDGF PKNOX1 FOXA2 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 ZNF548 HNRNPA3P6 FAM86DP LINC02018 RPL23AP49 ALG1L6P
GH03G075781 0.6 ENCODE 4.8 -346.5 -346530 0.9 SP1 MTA2 NFYB JUNB RELB DPF2 TBX21 SPI1 LINC00960 RPL23AP49 FAM86DP ZNF717 MIR4273
GH03G074633 0.6 dbSUPER 4.7 +800.1 800130 2.0 ATF1 ZBTB21 CEBPG ZEB2 ZNF394 ATF2 ZNF366 ZNF629 CREB1 ZNF600 CNTN3 FAM86DP LOC105377166 GC03P074677
GH03G074638 0.2 dbSUPER 4.7 +795.0 795034 2.3 CNTN3 HNRNPA3P6 FAM86DP LOC105377166 GC03P074677
GH03G075422 0.9 Ensembl ENCODE 0.4 +12.4 12379 1.5 CTCF ZNF654 NR2F1 TRIM22 REST RAD21 SCRT2 NR2C1 ZNF143 MLLT1 RPL23AP49 LINC02018 ALG1L6P FAM86DP
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM86DP on UCSC Golden Path with GeneCards custom track

Promoters for FAM86DP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000154763 -285 2401 HDGF SIN3A DMAP1 YY1 ZNF121 GLIS2 ZNF143 ZNF207 FOS ZNF548

Genomic Location for FAM86DP Gene

Chromosome:
3
Start:
75,421,552 bp from pter
End:
75,435,115 bp from pter
Size:
13,564 bases
Orientation:
Minus strand

Genomic View for FAM86DP Gene

Genes around FAM86DP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM86DP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM86DP Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAM86DP Gene

Proteins for FAM86DP Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for FAM86DP Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM86DP Gene

Domains & Families for FAM86DP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM86DP Gene

Function for FAM86DP Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM86DP Gene

Localization for FAM86DP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM86DP Gene

Pathways & Interactions for FAM86DP Gene

SuperPathways for FAM86DP Gene

PathCards logo More details on SuperPathways for FAM86DP
No Data Available

Interacting Proteins for FAM86DP Gene

Gene Ontology (GO) - Biological Process for FAM86DP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM86DP Gene

Drugs & Compounds for FAM86DP Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAM86DP Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FAM86DP Gene

(6) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM86DP Gene

Family with sequence similarity 86, member D, pseudogene:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM86DP Gene

No ASD Table

Relevant External Links for FAM86DP Gene

GeneLoc Exon Structure for
FAM86DP
ECgene alternative splicing isoforms for
FAM86DP

Expression for FAM86DP Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM86DP Gene

mRNA expression in normal human tissues for FAM86DP Gene
mRNA expression by GTEx for FAM86DP Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM86DP Gene:

FAM86DP

SOURCE GeneReport for Unigene cluster for FAM86DP Gene:

Hs.591652
genes like me logo Genes that share expression patterns with FAM86DP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM86DP Gene

Orthologs for FAM86DP Gene

Evolution for FAM86DP Gene

ENSEMBL:
Gene Tree for FAM86DP (if available)
TreeFam:
Gene Tree for FAM86DP (if available)

No data available for Orthologs for FAM86DP Gene

Paralogs for FAM86DP Gene

No data available for Paralogs for FAM86DP Gene

Variants for FAM86DP Gene

Sequence variations from dbSNP and Humsavar for FAM86DP Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000085759 -- 75,425,892(+) GCTTG(A/G)CCTCT intron-variant
rs1000114959 -- 75,425,678(+) GTTAA(C/T)GGGCT intron-variant
rs1000364624 -- 75,430,340(+) AAAAT(C/T)CATCC intron-variant
rs1000402432 -- 75,435,332(+) CAGGT(C/T)CTGGG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000933282 -- 75,421,921(+) TGTTG(C/T)TGGGT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM86DP Gene

Variant ID Type Subtype PubMed ID
dgv180e55 CNV loss 17911159
dgv181e55 CNV loss 17911159
dgv4773n100 CNV gain 25217958
dgv4774n100 CNV loss 25217958
dgv4775n100 CNV loss 25217958
dgv4776n100 CNV loss 25217958
dgv4777n100 CNV loss 25217958
dgv4778n100 CNV gain 25217958
dgv4780n100 CNV loss 25217958
dgv4781n100 CNV loss 25217958
dgv4782n100 CNV loss 25217958
dgv4783n100 CNV loss 25217958
dgv4784n100 CNV loss 25217958
dgv4785n100 CNV loss 25217958
dgv609n27 CNV loss 19166990
dgv8379n54 CNV loss 21841781
dgv8380n54 CNV loss 21841781
dgv8381n54 CNV loss 21841781
dgv8382n54 CNV loss 21841781
dgv8383n54 CNV loss 21841781
dgv8384n54 CNV loss 21841781
dgv8385n54 CNV gain 21841781
esv2422140 CNV deletion 20811451
esv2422240 CNV deletion 17116639
esv2422315 CNV deletion 17116639
esv26581 CNV gain+loss 19812545
esv2759157 CNV gain+loss 17122850
esv2763755 CNV gain+loss 21179565
esv3596599 CNV loss 21293372
esv3893725 CNV gain 25118596
esv997936 CNV gain 20482838
nsv1001108 CNV loss 25217958
nsv1002218 CNV loss 25217958
nsv1003560 CNV gain 25217958
nsv1009909 CNV gain 25217958
nsv3883 CNV insertion 18451855
nsv436393 CNV deletion 17901297
nsv442862 CNV loss 18776908
nsv469693 CNV loss 16826518
nsv508933 CNV insertion 20534489
nsv517173 CNV gain+loss 19592680
nsv529016 CNV gain 19592680
nsv590642 CNV loss 21841781
nsv590669 CNV loss 21841781
nsv590700 CNV loss 21841781
nsv818150 CNV loss 17921354
nsv965176 CNV duplication 23825009
nsv997444 CNV gain+loss 25217958
nsv997946 CNV loss 25217958

Relevant External Links for FAM86DP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM86DP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM86DP Gene

Disorders for FAM86DP Gene

Relevant External Links for FAM86DP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM86DP

No disorders were found for FAM86DP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM86DP Gene

Publications for FAM86DP Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 3 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FAM86DP Gene

Sources for FAM86DP Gene

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