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Aliases for FAM86C2P Gene

Aliases for FAM86C2P Gene

  • Family With Sequence Similarity 86 Member C2, Pseudogene 2 5
  • Family With Sequence Similarity 86, Member C2, Pseudogene 2
  • Family With Sequence Similarity 86, Member A Pseudogene 3
  • EC 2.1.1.- 4

External Ids for FAM86C2P Gene

Previous GeneCards Identifiers for FAM86C2P Gene

  • GC11M067561

Summaries for FAM86C2P Gene

GeneCards Summary for FAM86C2P Gene

FAM86C2P (Family With Sequence Similarity 86 Member C2, Pseudogene) is a Pseudogene. GO annotations related to this gene include methyltransferase activity.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM86C2P Gene

Genomics for FAM86C2P Gene

Regulatory Elements for FAM86C2P Gene

Enhancers for FAM86C2P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G068325 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -524.3 -524341 7.5 FOXA2 MLX ZFP64 ARID4B DMAP1 YY1 SLC30A9 SP5 MXD4 ZHX2 MRGPRF-AS1 MRGPRF ENSG00000261625 ENSG00000260808 C11orf24 LRP5 CORO1B IGHMBP2 FAM86C2P PPP6R3
GH11G067350 1.8 FANTOM5 ENCODE dbSUPER 10.3 +450.6 450605 7.8 ZFP64 DMAP1 YBX1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 GLIS1 ENSG00000258297 RBM14 SSH3 RBM4B RCE1 ANKRD13D PTPRCAP RAD9A CORO1B RHOD
GH11G068098 1.6 Ensembl ENCODE dbSUPER 10.4 -295.7 -295707 4.7 FOXA2 MLX ZFP64 ARID4B DMAP1 YY1 SLC30A9 ZNF143 SP5 ZHX2 MRGPRF-AS1 MRGPRF ENSG00000261625 ENSG00000260808 SSH3 ENSG00000255031 TCIRG1 NDUFS8 RAD9A CORO1B
GH11G067116 1.3 ENCODE dbSUPER 10.3 +685.6 685633 5.7 HDGF PKNOX1 FOXA2 ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF207 SP3 LOC105369352 ENSG00000254461 ENSG00000258297 RBM14 SSH3 KLC2 RBM4B RCE1 B4GAT1 PTPRCAP
GH11G067826 1.2 Ensembl ENCODE 6.5 -21.4 -21365 0.6 PKNOX1 ATF1 CREB3L1 ARNT E2F7 FEZF1 TCF12 GLIS2 TSHZ1 REST FAM86C2P GC11P067824 GC11P067827
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM86C2P on UCSC Golden Path with GeneCards custom track

Promoters for FAM86C2P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000041157 -364 1801 HDGF PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143

Genomic Location for FAM86C2P Gene

Chromosome:
11
Start:
67,791,648 bp from pter
End:
67,805,336 bp from pter
Size:
13,689 bases
Orientation:
Minus strand

Genomic View for FAM86C2P Gene

Genes around FAM86C2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM86C2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM86C2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM86C2P Gene

Proteins for FAM86C2P Gene

  • Protein details for FAM86C2P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NEL3-F86C2_HUMAN
    Recommended name:
    Putative protein FAM86C2P
    Protein Accession:
    A6NEL3

    Protein attributes for FAM86C2P Gene

    Size:
    165 amino acids
    Molecular mass:
    18478 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM86C2P Gene

Post-translational modifications for FAM86C2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM86C2P Gene

Domains & Families for FAM86C2P Gene

Protein Domains for FAM86C2P Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

A6NEL3

UniProtKB/Swiss-Prot:

F86C2_HUMAN :
  • Belongs to the class I-like SAM-binding methyltransferase superfamily. EEF2KMT family.
Family:
  • Belongs to the class I-like SAM-binding methyltransferase superfamily. EEF2KMT family.
genes like me logo Genes that share domains with FAM86C2P: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for FAM86C2P Gene

Function for FAM86C2P Gene

Enzyme Numbers (IUBMB) for FAM86C2P Gene

Gene Ontology (GO) - Molecular Function for FAM86C2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008168 methyltransferase activity IEA --
genes like me logo Genes that share ontologies with FAM86C2P: view

Phenotypes for FAM86C2P Gene

GenomeRNAi human phenotypes for FAM86C2P:
genes like me logo Genes that share phenotypes with FAM86C2P: view

Animal Model Products

Clone Products

No data available for Molecular function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM86C2P Gene

Localization for FAM86C2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM86C2P Gene

Pathways & Interactions for FAM86C2P Gene

SuperPathways for FAM86C2P Gene

No Data Available

Interacting Proteins for FAM86C2P Gene

Gene Ontology (GO) - Biological Process for FAM86C2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032259 methylation IEA --
genes like me logo Genes that share ontologies with FAM86C2P: view

No data available for Pathways by source and SIGNOR curated interactions for FAM86C2P Gene

Drugs & Compounds for FAM86C2P Gene

No Compound Related Data Available

Transcripts for FAM86C2P Gene

mRNA/cDNA for FAM86C2P Gene

(4) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM86C2P Gene

Family with sequence similarity 86, member A pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM86C2P Gene

No ASD Table

Relevant External Links for FAM86C2P Gene

GeneLoc Exon Structure for
FAM86C2P
ECgene alternative splicing isoforms for
FAM86C2P

Expression for FAM86C2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM86C2P Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM86C2P Gene:

FAM86C2P

SOURCE GeneReport for Unigene cluster for FAM86C2P Gene:

Hs.535094
genes like me logo Genes that share expression patterns with FAM86C2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM86C2P Gene

Orthologs for FAM86C2P Gene

Evolution for FAM86C2P Gene

ENSEMBL:
Gene Tree for FAM86C2P (if available)
TreeFam:
Gene Tree for FAM86C2P (if available)

No data available for Orthologs for FAM86C2P Gene

Paralogs for FAM86C2P Gene

(4) SIMAP similar genes for FAM86C2P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM86C2P: view

No data available for Paralogs for FAM86C2P Gene

Variants for FAM86C2P Gene

Sequence variations from dbSNP and Humsavar for FAM86C2P Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000055108 -- 67,805,685(+) TGCGT(C/G/T)GGGGC upstream-variant-2KB
rs1000117234 -- 67,801,166(+) AAGTC(C/T)CCTAT intron-variant
rs1000292841 -- 67,805,477(+) AGGAT(A/G)AGCGT upstream-variant-2KB
rs1000632115 -- 67,804,725(+) TGTCT(A/C)TTCCA intron-variant
rs1001061517 -- 67,792,667(+) TTTCC(A/G)CCGTG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM86C2P Gene

Variant ID Type Subtype PubMed ID
dgv1214n100 CNV gain 25217958
dgv1215n100 CNV gain 25217958
dgv1216n100 CNV gain+loss 25217958
dgv1217n100 CNV gain 25217958
dgv1218n100 CNV gain 25217958
dgv1219n100 CNV loss 25217958
dgv1220n100 CNV gain 25217958
dgv14n64 CNV loss 17921354
dgv1981n54 CNV gain 21841781
dgv221e199 CNV deletion 23128226
dgv53n111 CNV deletion 26073780
esv2422195 CNV duplication 17116639
esv2744651 CNV deletion 23290073
esv2759835 CNV gain+loss 17122850
esv2761681 CNV loss 21179565
esv3626720 CNV loss 21293372
esv3626721 CNV loss 21293372
esv3626722 CNV gain 21293372
esv3892023 CNV gain+loss 25118596
esv3892024 CNV loss 25118596
nsv1047372 CNV loss 25217958
nsv369 CNV insertion 18451855
nsv428260 CNV gain 18775914
nsv468606 CNV gain 19166990
nsv468610 CNV loss 19166990
nsv469719 CNV loss 16826518
nsv516191 CNV gain+loss 19592680
nsv555274 CNV gain 21841781
nsv555275 CNV gain 21841781
nsv555276 CNV loss 21841781
nsv818845 CNV loss 17921354
nsv825961 CNV loss 20364138
nsv825962 CNV loss 20364138
nsv951025 CNV deletion 24416366
nsv975944 CNV duplication 23825009

Relevant External Links for FAM86C2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM86C2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM86C2P Gene

Disorders for FAM86C2P Gene

Relevant External Links for FAM86C2P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM86C2P

No disorders were found for FAM86C2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM86C2P Gene

Publications for FAM86C2P Gene

  1. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 3 64
  2. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 4 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FAM86C2P Gene

Sources for FAM86C2P Gene

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