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Aliases for FAM86C2P Gene

Aliases for FAM86C2P Gene

  • Family With Sequence Similarity 86 Member C2, Pseudogene 2 5
  • Family With Sequence Similarity 86, Member C2, Pseudogene 2
  • Family With Sequence Similarity 86, Member A Pseudogene 3
  • EC 2.1.1.- 4

External Ids for FAM86C2P Gene

Previous GeneCards Identifiers for FAM86C2P Gene

  • GC11M067561

Summaries for FAM86C2P Gene

GeneCards Summary for FAM86C2P Gene

FAM86C2P (Family With Sequence Similarity 86 Member C2, Pseudogene) is a Pseudogene. Gene Ontology (GO) annotations related to this gene include methyltransferase activity.

Additional gene information for FAM86C2P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM86C2P Gene

Genomics for FAM86C2P Gene

GeneHancer (GH) Regulatory Elements for FAM86C2P Gene

Promoters and enhancers for FAM86C2P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I067804 Promoter/Enhancer 1.5 Ensembl ENCODE 555.8 -0.5 -469 3.5 HDGF PKNOX1 CLOCK ATF1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 GLIS2 FAM86C2P ENSG00000255031 OR7E11P GC11M067793
GH11I067116 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 21 +685.6 685633 5.7 PKNOX1 ARID4B SIN3A DMAP1 IRF4 YY1 POLR2B ZNF766 ZNF207 SP3 KDM2A ENSG00000258297 RBM14 ENSG00000254461 LOC105369352 RBM4 RCE1 RAD9A ENSG00000245156 ENSG00000255320
GH11I068098 Enhancer 1.4 Ensembl ENCODE dbSUPER 21 -295.7 -295706 4.7 FOXA2 SMAD1 MLX ZFP64 ARID4B DMAP1 YY1 SLC30A9 ZNF213 SP5 KMT5B PPP6R3 MRGPRF-AS1 ENSG00000260808 MRGPRF ENSG00000261625 TPCN2 RAD9A KDM2A SSH3
GH11I067390 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12.4 +413.5 413458 2.2 CLOCK MLX ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 E2F8 RAD9A PIR46028 KMT5B ENSG00000258297 RBM14 RBM4 MRPL11 KDM2A RHOD FAM86C2P
GH11I066996 Enhancer 0.9 ENCODE 12.4 +808.1 808052 1.5 CLOCK FOXA2 ZFP64 ARID4B NEUROD1 SIN3A DMAP1 ZBTB7B ZNF213 FOS RBM14 LOC105369352 ENSG00000254461 ENSG00000258297 RBM4 ENSG00000255038 SF3B2 RAD9A RCE1 ENSG00000245156
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM86C2P on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM86C2P Gene

Genomic Locations for FAM86C2P Gene
chr11:67,791,648-67,805,336
(GRCh38/hg38)
Size:
13,689 bases
Orientation:
Minus strand
chr11:67,559,119-67,572,807
(GRCh37/hg19)

Genomic View for FAM86C2P Gene

Genes around FAM86C2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM86C2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM86C2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM86C2P Gene

Proteins for FAM86C2P Gene

  • Protein details for FAM86C2P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NEL3-F86C2_HUMAN
    Recommended name:
    Putative protein FAM86C2P
    Protein Accession:
    A6NEL3

    Protein attributes for FAM86C2P Gene

    Size:
    165 amino acids
    Molecular mass:
    18478 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM86C2P Gene

Post-translational modifications for FAM86C2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM86C2P Gene

Domains & Families for FAM86C2P Gene

Protein Domains for FAM86C2P Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

A6NEL3

UniProtKB/Swiss-Prot:

F86C2_HUMAN :
  • Belongs to the class I-like SAM-binding methyltransferase superfamily. EEF2KMT family.
Family:
  • Belongs to the class I-like SAM-binding methyltransferase superfamily. EEF2KMT family.
genes like me logo Genes that share domains with FAM86C2P: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for FAM86C2P Gene

Function for FAM86C2P Gene

Enzyme Numbers (IUBMB) for FAM86C2P Gene

Gene Ontology (GO) - Molecular Function for FAM86C2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008168 methyltransferase activity IEA --
genes like me logo Genes that share ontologies with FAM86C2P: view

Phenotypes for FAM86C2P Gene

GenomeRNAi human phenotypes for FAM86C2P:
genes like me logo Genes that share phenotypes with FAM86C2P: view

Animal Model Products

Clone Products

No data available for Molecular function , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM86C2P Gene

Localization for FAM86C2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM86C2P Gene

Pathways & Interactions for FAM86C2P Gene

SuperPathways for FAM86C2P Gene

No Data Available

Interacting Proteins for FAM86C2P Gene

Gene Ontology (GO) - Biological Process for FAM86C2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032259 methylation IEA --
genes like me logo Genes that share ontologies with FAM86C2P: view

No data available for Pathways by source and SIGNOR curated interactions for FAM86C2P Gene

Drugs & Compounds for FAM86C2P Gene

No Compound Related Data Available

Transcripts for FAM86C2P Gene

mRNA/cDNA for FAM86C2P Gene

(4) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM86C2P Gene

Family with sequence similarity 86, member A pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM86C2P Gene

No ASD Table

Relevant External Links for FAM86C2P Gene

GeneLoc Exon Structure for
FAM86C2P
ECgene alternative splicing isoforms for
FAM86C2P

Expression for FAM86C2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM86C2P Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM86C2P Gene:

FAM86C2P

SOURCE GeneReport for Unigene cluster for FAM86C2P Gene:

Hs.535094
genes like me logo Genes that share expression patterns with FAM86C2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM86C2P Gene

Orthologs for FAM86C2P Gene

Evolution for FAM86C2P Gene

ENSEMBL:
Gene Tree for FAM86C2P (if available)
TreeFam:
Gene Tree for FAM86C2P (if available)

No data available for Orthologs for FAM86C2P Gene

Paralogs for FAM86C2P Gene

(4) SIMAP similar genes for FAM86C2P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM86C2P: view

No data available for Paralogs for FAM86C2P Gene

Variants for FAM86C2P Gene

Sequence variations from dbSNP and Humsavar for FAM86C2P Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000055108 -- 67,805,685(-) G/C/T upstream_transcript_variant
rs1000117234 -- 67,801,166(-) T/C intron_variant
rs1000292841 -- 67,805,477(-) G/A upstream_transcript_variant
rs1000632115 -- 67,804,725(-) C/A intron_variant
rs1001061517 -- 67,792,667(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM86C2P Gene

Variant ID Type Subtype PubMed ID
dgv1214n100 CNV gain 25217958
dgv1215n100 CNV gain 25217958
dgv1216n100 CNV gain+loss 25217958
dgv1217n100 CNV gain 25217958
dgv1218n100 CNV gain 25217958
dgv1219n100 CNV loss 25217958
dgv1220n100 CNV gain 25217958
dgv14n64 CNV loss 17921354
dgv1981n54 CNV gain 21841781
dgv221e199 CNV deletion 23128226
dgv53n111 CNV deletion 26073780
esv2422195 CNV duplication 17116639
esv2744651 CNV deletion 23290073
esv2759835 CNV gain+loss 17122850
esv2761681 CNV loss 21179565
esv3626720 CNV loss 21293372
esv3626721 CNV loss 21293372
esv3626722 CNV gain 21293372
esv3892023 CNV gain+loss 25118596
esv3892024 CNV loss 25118596
nsv1047372 CNV loss 25217958
nsv369 CNV insertion 18451855
nsv428260 CNV gain 18775914
nsv468606 CNV gain 19166990
nsv468610 CNV loss 19166990
nsv469719 CNV loss 16826518
nsv516191 CNV gain+loss 19592680
nsv555274 CNV gain 21841781
nsv555275 CNV gain 21841781
nsv555276 CNV loss 21841781
nsv818845 CNV loss 17921354
nsv825961 CNV loss 20364138
nsv825962 CNV loss 20364138
nsv951025 CNV deletion 24416366
nsv975944 CNV duplication 23825009

Additional Variant Information for FAM86C2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM86C2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM86C2P Gene

Disorders for FAM86C2P Gene

Additional Disease Information for FAM86C2P

No disorders were found for FAM86C2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM86C2P Gene

Publications for FAM86C2P Gene

  1. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny DM … Gibbs RA (Nature 2006) 3 58
  2. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor TD … Sakaki Y (Nature 2006) 4 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for FAM86C2P Gene

Sources for FAM86C2P Gene

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