Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FAM86C2P Gene

Aliases for FAM86C2P Gene

  • Family With Sequence Similarity 86, Member C2, Pseudogene 2
  • Family With Sequence Similarity 86, Member A Pseudogene 3
  • EC 2.1.1.- 4

External Ids for FAM86C2P Gene

Previous GeneCards Identifiers for FAM86C2P Gene

  • GC11M067561

Summaries for FAM86C2P Gene

GeneCards Summary for FAM86C2P Gene

FAM86C2P (Family With Sequence Similarity 86, Member C2, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM86C2P Gene

Genomics for FAM86C2P Gene

Genomic Location for FAM86C2P Gene

Start:
67,791,648 bp from pter
End:
67,805,336 bp from pter
Size:
13,689 bases
Orientation:
Minus strand

Genomic View for FAM86C2P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM86C2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM86C2P Gene

No data available for Regulatory Elements for FAM86C2P Gene

Proteins for FAM86C2P Gene

  • Protein details for FAM86C2P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NEL3-F86C2_HUMAN
    Recommended name:
    Putative protein FAM86C2P
    Protein Accession:
    A6NEL3
    Secondary Accessions:

    Protein attributes for FAM86C2P Gene

    Size:
    165 amino acids
    Molecular mass:
    18478 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM86C2P Gene

Proteomics data for FAM86C2P Gene at MOPED

Post-translational modifications for FAM86C2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM86C2P Gene

Domains for FAM86C2P Gene

Protein Domains for FAM86C2P Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

A6NEL3

UniProtKB/Swiss-Prot:

F86C2_HUMAN :
  • A6NEL3
Family:
  • Belongs to the class I-like SAM-binding methyltransferase superfamily. EEF2KMT family.
genes like me logo Genes that share domains with FAM86C2P: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for FAM86C2P Gene

Function for FAM86C2P Gene

Enzyme Numbers (IUBMB) for FAM86C2P Gene

Gene Ontology (GO) - Molecular Function for FAM86C2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008168 methyltransferase activity IEA --
genes like me logo Genes that share ontologies with FAM86C2P: view

Animal Model Products

No data available for Molecular function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM86C2P Gene

Localization for FAM86C2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM86C2P Gene

Pathways for FAM86C2P Gene

SuperPathways for FAM86C2P Gene

No Data Available

Interacting Proteins for FAM86C2P Gene

Gene Ontology (GO) - Biological Process for FAM86C2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032259 methylation IEA --
genes like me logo Genes that share ontologies with FAM86C2P: view

No data available for Pathways by source for FAM86C2P Gene

Transcripts for FAM86C2P Gene

mRNA/cDNA for FAM86C2P Gene

(4) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM86C2P Gene

Family with sequence similarity 86, member A pseudogene:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM86C2P

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM86C2P Gene

No ASD Table

Relevant External Links for FAM86C2P Gene

GeneLoc Exon Structure for
FAM86C2P
ECgene alternative splicing isoforms for
FAM86C2P

Expression for FAM86C2P Gene

mRNA expression in normal human tissues for FAM86C2P Gene

SOURCE GeneReport for Unigene cluster for FAM86C2P Gene Hs.535094

genes like me logo Genes that share expressions with FAM86C2P: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for FAM86C2P Gene

Orthologs for FAM86C2P Gene

Evolution for FAM86C2P Gene

ENSEMBL:
Gene Tree for FAM86C2P (if available)
TreeFam:
Gene Tree for FAM86C2P (if available)

No data available for Orthologs for FAM86C2P Gene

Paralogs for FAM86C2P Gene

Selected SIMAP similar genes for FAM86C2P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM86C2P: view

No data available for Paralogs for FAM86C2P Gene

Variants for FAM86C2P Gene

Sequence variations from dbSNP and Humsavar for FAM86C2P Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs1047554 -- 67,793,035(-) ACATC(A/G)GCTAT nc-transcript-variant
rs1047704 -- 67,792,255(-) CTTCC(A/G)GAACT nc-transcript-variant
rs1129699 -- 67,792,768(-) CACTC(A/G)GTTCT nc-transcript-variant
rs3210436 -- 67,799,418(-) AGACC(C/T)TGATG intron-variant
rs4075877 -- 67,800,465(-) GTCTC(A/G)GCTCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM86C2P Gene

Variant ID Type Subtype PubMed ID
esv2422195 CNV Duplication 17116639
nsv468606 CNV Gain 19166990
dgv394e1 CNV Complex 17122850
esv2744651 CNV Deletion 23290073
dgv221e199 CNV Deletion 23128226
dgv395e1 CNV Complex 17122850
nsv897828 CNV Loss 21882294
dgv1201n71 CNV Gain 21882294
nsv818845 CNV Loss 17921354
nsv468610 CNV Loss 19166990
dgv14n64 CNV Loss 17921354
nsv516191 CNV Gain+Loss 19592680
nsv897833 CNV Gain 21882294
nsv825961 CNV Loss 20364138
nsv469719 CNV Loss 16826518
dgv1202n71 CNV Loss 21882294
nsv428260 CNV Gain 18775914
nsv825962 CNV Loss 20364138
nsv369 CNV Insertion 18451855

Relevant External Links for FAM86C2P Gene

HapMap Linkage Disequilibrium report
FAM86C2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM86C2P Gene

Disorders for FAM86C2P Gene

No disorders were found for FAM86C2P Gene.

No data available for UniProtKB/Swiss-Prot for FAM86C2P Gene

Publications for FAM86C2P Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 3
  4. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PMID: 21906983) Kim W. … Gygi S.P. (Mol. Cell 2011) 3
  5. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 4

Products for FAM86C2P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM86C2P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM86C2P
    • Block miRNA regulation of FAM86C2P using miScript Target Protectors

    Sources for FAM86C2P Gene

    Back to Top

    Content