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Aliases for FAM86B3P Gene

Aliases for FAM86B3P Gene

  • Family With Sequence Similarity 86 Member B3, Pseudogene 2 5
  • Family With Sequence Similarity 86, Member B3, Pseudogene 2
  • Family With Sequence Similarity 86, Member A Pseudogene 3

External Ids for FAM86B3P Gene

Previous GeneCards Identifiers for FAM86B3P Gene

  • GC08P008089

Summaries for FAM86B3P Gene

GeneCards Summary for FAM86B3P Gene

FAM86B3P (Family With Sequence Similarity 86 Member B3, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM86B3P Gene

Genomics for FAM86B3P Gene

Regulatory Elements for FAM86B3P Gene

Enhancers for FAM86B3P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G008285 1.9 FANTOM5 Ensembl ENCODE dbSUPER 43.1 +59.9 59880 5.3 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF766 FOS SP5 FAM86B3P FAM66B FAM66E OR7E154P FAM90A12P FAM90A11P ALG1L13P PRAG1
GH08G008283 1.6 FANTOM5 Ensembl ENCODE dbSUPER 49.1 +55.9 55850 2.2 CTCF TBP PKNOX1 FOXA2 TBL1XR1 ZBTB21 BACH1 BMI1 RELA POLR2A FAM86B3P ALG1L13P PRAG1
GH08G008293 1.9 FANTOM5 Ensembl ENCODE dbSUPER 39.7 +67.4 67363 4.1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF48 SLC30A9 GLIS2 GATA2 FAM86B3P CLDN23 RPL10P19 ALG1L13P PRAG1
GH08G008237 1.1 Ensembl ENCODE 50.1 +10.1 10072 1.9 HDAC1 HDGF PKNOX1 RB1 BMI1 ZBTB40 ZNF207 RELB IKZF2 ELF4 FAM86B3P CLDN23 ALG1L13P
GH08G009056 1.6 FANTOM5 Ensembl ENCODE dbSUPER 30.4 +829.1 829051 2.8 PKNOX1 ZNF76 GLIS2 SP5 ZNF426 RAD51 MAFF PBX2 IKZF1 GLIS1 FAM86B3P ERI1 RPL10P19 MIR4660 RNU7-55P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM86B3P on UCSC Golden Path with GeneCards custom track

Promoters for FAM86B3P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000220694 -470 2201 HDGF PKNOX1 SREBF2 SIN3A BMI1 GLIS2 EGR1 ELK1 ZNF143 RCOR1

Genomic Location for FAM86B3P Gene

Chromosome:
8
Start:
8,228,570 bp from pter
End:
8,244,865 bp from pter
Size:
16,296 bases
Orientation:
Plus strand

Genomic View for FAM86B3P Gene

Genes around FAM86B3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM86B3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM86B3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM86B3P Gene

Proteins for FAM86B3P Gene

Post-translational modifications for FAM86B3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM86B3P Gene

Domains & Families for FAM86B3P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM86B3P Gene

Function for FAM86B3P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM86B3P Gene

Localization for FAM86B3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM86B3P Gene

Pathways & Interactions for FAM86B3P Gene

SuperPathways for FAM86B3P Gene

No Data Available

Interacting Proteins for FAM86B3P Gene

Gene Ontology (GO) - Biological Process for FAM86B3P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM86B3P Gene

Drugs & Compounds for FAM86B3P Gene

No Compound Related Data Available

Transcripts for FAM86B3P Gene

Unigene Clusters for FAM86B3P Gene

Family with sequence similarity 86, member A pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM86B3P Gene

No ASD Table

Relevant External Links for FAM86B3P Gene

GeneLoc Exon Structure for
FAM86B3P
ECgene alternative splicing isoforms for
FAM86B3P

Expression for FAM86B3P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM86B3P Gene

mRNA differential expression in normal tissues according to GTEx for FAM86B3P Gene

This gene is overexpressed in Whole Blood (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of FAM86B3P Gene:

FAM86B3P

SOURCE GeneReport for Unigene cluster for FAM86B3P Gene:

Hs.656318
genes like me logo Genes that share expression patterns with FAM86B3P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM86B3P Gene

Orthologs for FAM86B3P Gene

Evolution for FAM86B3P Gene

ENSEMBL:
Gene Tree for FAM86B3P (if available)
TreeFam:
Gene Tree for FAM86B3P (if available)

No data available for Orthologs for FAM86B3P Gene

Paralogs for FAM86B3P Gene

No data available for Paralogs for FAM86B3P Gene

Variants for FAM86B3P Gene

Sequence variations from dbSNP and Humsavar for FAM86B3P Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000182314 -- 8,243,393(+) AGCAT(G/T)TGAGA intron-variant
rs1000303528 -- 8,243,157(+) AGGTA(C/T)TGTTC intron-variant
rs1000452776 -- 8,237,266(+) TCACC(A/C)CCGAG nc-transcript-variant
rs1000684086 -- 8,227,410(+) TGGGG(A/G)ACAGA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000932748 -- 8,241,415(+) AATCA(C/T)GGCAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM86B3P Gene

Variant ID Type Subtype PubMed ID
dgv11914n54 CNV gain 21841781
dgv11928n54 CNV gain 21841781
dgv11937n54 CNV gain 21841781
dgv1266e199 CNV deletion 23128226
dgv2035e212 CNV gain 25503493
dgv2036e212 CNV gain 25503493
dgv4072e59 CNV duplication 20981092
dgv6890n100 CNV gain 25217958
dgv6995n100 CNV loss 25217958
dgv6996n100 CNV gain 25217958
dgv7000n100 CNV gain 25217958
dgv7001n100 CNV gain 25217958
dgv7002n100 CNV gain 25217958
dgv863n27 CNV gain 19166990
esv25631 CNV gain+loss 19812545
esv2752265 CNV gain 17911159
esv2752266 CNV loss 17911159
esv2759589 CNV gain+loss 17122850
esv2764098 CNV gain+loss 21179565
esv34576 CNV gain 17911159
esv3584878 CNV loss 24956385
esv3616129 CNV gain 21293372
nsv1075527 CNV deletion 25765185
nsv428194 CNV gain+loss 18775914
nsv470181 CNV gain 18288195
nsv515968 CNV gain+loss 19592680
nsv610146 CNV gain 21841781
nsv610147 CNV gain 21841781
nsv610149 CNV gain 21841781
nsv610151 CNV gain 21841781
nsv610152 CNV gain 21841781
nsv610153 CNV loss 21841781
nsv610154 CNV loss 21841781
nsv818593 CNV gain 17921354
nsv821579 CNV deletion 20802225
nsv821656 CNV gain 15273396
nsv951096 CNV deletion 24416366
nsv981908 CNV duplication 23825009

Relevant External Links for FAM86B3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM86B3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM86B3P Gene

Disorders for FAM86B3P Gene

Relevant External Links for FAM86B3P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM86B3P

No disorders were found for FAM86B3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM86B3P Gene

Publications for FAM86B3P Gene

  1. Toward an understanding of the protein interaction network of the human liver. (PMID: 21988832) Wang J. … Yang X. (Mol. Syst. Biol. 2011) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  3. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for FAM86B3P Gene

Sources for FAM86B3P Gene

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