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FAM85A Gene(RNA Gene)

Family With Sequence Similarity 85 Member A

GCID:
GC08P012194
GIFtS:
18
Genes Participants
UDN Logo

Aliases for FAM85A Gene

Subcategory (RNA class) for FAM85A Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for FAM85A Gene

  • Family With Sequence Similarity 85 Member A 2 3
  • Family With Sequence Similarity 85, Member A 2
  • AC145124.2 5

External Ids for FAM85A Gene

Previous GeneCards Identifiers for FAM85A Gene

  • GC08U900641
  • GC08P012052

Summaries for FAM85A Gene

GeneCards Summary for FAM85A Gene

FAM85A (Family With Sequence Similarity 85 Member A) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM85A Gene

Genomics for FAM85A Gene

Products:

  1. Regulatory Element

Regulatory Elements for FAM85A Gene

Enhancers for FAM85A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G011799 1.4 ENCODE dbSUPER 17.5 -382.1 -382076 11.2 HDGF PKNOX1 FOXA2 CREB3L1 ARNT AGO1 WRNIP1 ARID4B SIN3A FEZF1 FDFT1 FAM85A NEIL2 CTSB FAM86B2 PINX1 LOC105379241 BLK ENSG00000255122 RPS3AP34
GH08G011696 2.4 VISTA FANTOM5 Ensembl ENCODE dbSUPER 4.7 -477.5 -477457 25.1 HDGF PKNOX1 FOXA2 ARNT MLX ZFP64 ARID4B SIN3A DMAP1 FEZF1 GATA4 RPS3AP34 FAM90A2P ENSG00000255354 ENSG00000255518 LOC105379241 BLK FAM66A MTMR9 FAM167A
GH08G011739 1.9 VISTA Ensembl ENCODE dbSUPER 5.3 -444.8 -444780 5.7 FOXA2 ATF1 TBL1XR1 FEZF1 RAD21 ZNF121 GLIS2 ELK1 SCRT2 ZNF548 PINX1 LOC101929290 ENSG00000269918 NEIL2 LOC105379241 FDFT1 ENSG00000269954 FAM85A ENSG00000270154 FAM167A
GH08G011529 1.1 ENCODE dbSUPER 7.1 -654.5 -654498 5.6 HDGF TBP PKNOX1 TBL1XR1 WRNIP1 BMI1 ZNF335 EGR1 ZNF366 ZNF143 LOC105379241 FAM167A BLK ENSG00000255354 ENSG00000255518 FAM85A LOC649352 ENSG00000269918 FAM66A ENSG00000269954
GH08G011856 1.7 Ensembl ENCODE dbSUPER 4.4 -323.8 -323761 12.5 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF263 NFYC TBX21 CTSB FAM167A-AS1 FDFT1 NEIL2 FAM85A PIR52976
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM85A on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM85A Gene

Chromosome:
8
Start:
12,186,897 bp from pter
End:
12,204,842 bp from pter
Size:
17,946 bases
Orientation:
Plus strand

Genomic View for FAM85A Gene

Genes around FAM85A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM85A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM85A Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAM85A Gene

Proteins for FAM85A Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for FAM85A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM85A Gene

Domains & Families for FAM85A Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM85A Gene

Function for FAM85A Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM85A Gene

Localization for FAM85A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM85A Gene

Pathways & Interactions for FAM85A Gene

SuperPathways for FAM85A Gene

PathCards logo More details on SuperPathways for FAM85A
No Data Available

Interacting Proteins for FAM85A Gene

Gene Ontology (GO) - Biological Process for FAM85A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM85A Gene

Drugs & Compounds for FAM85A Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAM85A Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FAM85A Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM85A Gene

Family with sequence similarity 85, member A:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM85A Gene

No ASD Table

Relevant External Links for FAM85A Gene

GeneLoc Exon Structure for
FAM85A
ECgene alternative splicing isoforms for
FAM85A

Expression for FAM85A Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM85A Gene

mRNA expression in normal human tissues for FAM85A Gene
mRNA expression by GTEx for FAM85A Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM85A Gene:

FAM85A

SOURCE GeneReport for Unigene cluster for FAM85A Gene:

Hs.745150
genes like me logo Genes that share expression patterns with FAM85A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM85A Gene

Orthologs for FAM85A Gene

Evolution for FAM85A Gene

ENSEMBL:
Gene Tree for FAM85A (if available)
TreeFam:
Gene Tree for FAM85A (if available)

No data available for Orthologs for FAM85A Gene

Paralogs for FAM85A Gene

No data available for Paralogs for FAM85A Gene

Variants for FAM85A Gene

Sequence variations from dbSNP and Humsavar for FAM85A Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1003063594 -- 12,193,444(+) GCAGG(-/T)TCCCC intron-variant, upstream-variant-2KB
rs1004016892 -- 12,201,591(+) TGGGA(A/G)GATCG intron-variant
rs1004471664 -- 12,203,226(+) TTGAG(C/G)TAGAT intron-variant
rs1007527214 -- 12,199,583(+) ACCAG(C/T)ATGGC intron-variant, upstream-variant-2KB
rs1008079147 -- 12,197,590(+) GTTTC(A/C)ACTTA intron-variant

Relevant External Links for FAM85A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM85A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM85A Gene

Disorders for FAM85A Gene

No disorders were found for FAM85A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FAM85A Gene

Publications for FAM85A Gene

No publications were found for FAM85A Gene.

Products for FAM85A Gene

Sources for FAM85A Gene

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