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Aliases for FAM83H-AS1 Gene

Subcategory (RNA class) for FAM83H-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM83H-AS1 Gene

  • FAM83H Antisense RNA 1 (Head To Head) 2 3 5
  • Onco-LncRNA-3 3

External Ids for FAM83H-AS1 Gene

Previous GeneCards Identifiers for FAM83H-AS1 Gene

  • GC08P144818

Summaries for FAM83H-AS1 Gene

GeneCards Summary for FAM83H-AS1 Gene

FAM83H-AS1 (FAM83H Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM83H-AS1 Gene

Genomics for FAM83H-AS1 Gene

Regulatory Elements for FAM83H-AS1 Gene

Enhancers for FAM83H-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around FAM83H-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM83H-AS1 Gene

Chromosome:
8
Start:
143,734,140 bp from pter
End:
143,790,644 bp from pter
Size:
56,505 bases
Orientation:
Plus strand

Genomic View for FAM83H-AS1 Gene

Genes around FAM83H-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM83H-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM83H-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM83H-AS1 Gene

Proteins for FAM83H-AS1 Gene

Post-translational modifications for FAM83H-AS1 Gene

No Post-translational modifications

Other Protein References for FAM83H-AS1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for FAM83H-AS1 Gene

Domains & Families for FAM83H-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM83H-AS1 Gene

Function for FAM83H-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM83H-AS1 Gene

Localization for FAM83H-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM83H-AS1 Gene

Pathways & Interactions for FAM83H-AS1 Gene

SuperPathways for FAM83H-AS1 Gene

No Data Available

Interacting Proteins for FAM83H-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM83H-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM83H-AS1 Gene

Drugs & Compounds for FAM83H-AS1 Gene

No Compound Related Data Available

Transcripts for FAM83H-AS1 Gene

mRNA/cDNA for FAM83H-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM83H-AS1 Gene

No ASD Table

Relevant External Links for FAM83H-AS1 Gene

GeneLoc Exon Structure for
FAM83H-AS1
ECgene alternative splicing isoforms for
FAM83H-AS1

Expression for FAM83H-AS1 Gene

mRNA expression in normal human tissues for FAM83H-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM83H-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x11.3), Skin - Not Sun Exposed (Suprapubic) (x6.6), Skin - Sun Exposed (Lower leg) (x5.0), and Vagina (x4.8).
genes like me logo Genes that share expression patterns with FAM83H-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM83H-AS1 Gene

Orthologs for FAM83H-AS1 Gene

Evolution for FAM83H-AS1 Gene

ENSEMBL:
Gene Tree for FAM83H-AS1 (if available)
TreeFam:
Gene Tree for FAM83H-AS1 (if available)

No data available for Orthologs for FAM83H-AS1 Gene

Paralogs for FAM83H-AS1 Gene

No data available for Paralogs for FAM83H-AS1 Gene

Variants for FAM83H-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM83H-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1128895 -- 143,746,074(+) TTTCT(A/G)TTCAT nc-transcript-variant
rs4074640 -- 143,743,120(-) CTGGC(A/G)AGGCC intron-variant
rs4074641 -- 143,743,102(-) GTGGC(C/T)ACCCT intron-variant
rs4074642 -- 143,742,865(-) CCCTT(A/C)GCACC intron-variant
rs7825268 -- 143,746,557(+) tttta(A/T)ttttt downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for FAM83H-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2738037 CNV deletion 23290073
esv3619116 CNV loss 21293372
nsv466007 CNV loss 19166990
nsv519816 CNV loss 19592680
nsv612893 CNV loss 21841781
nsv612895 CNV loss 21841781
nsv6441 CNV insertion 18451855

Relevant External Links for FAM83H-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM83H-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM83H-AS1 Gene

Disorders for FAM83H-AS1 Gene

Relevant External Links for FAM83H-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM83H-AS1

No disorders were found for FAM83H-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM83H-AS1 Gene

Publications for FAM83H-AS1 Gene

  1. Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function. (PMID: 25864709) Cabanski C.R. … Maher C.A. (RNA Biol 2015) 2 3 65
  2. Transcriptome sequencing reveals altered long intergenic non-coding RNAs in lung cancer. (PMID: 25116943) White N.M. … Maher C.A. (Genome Biol. 2014) 3 65
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 65
  4. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 65

Products for FAM83H-AS1 Gene

Sources for FAM83H-AS1 Gene

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