Free for academic non-profit institutions. Other users need a Commercial license

FAM83H-AS1 Gene(RNA Gene)

FAM83H Antisense RNA 1 (Head To Head)

GCID:
GC08P143734
GIFtS:
20
Genes Participants
UDN Logo

Aliases for FAM83H-AS1 Gene

Subcategory (RNA class) for FAM83H-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM83H-AS1 Gene

  • FAM83H Antisense RNA 1 (Head To Head) 2 3 5
  • Onco-LncRNA-3 3

External Ids for FAM83H-AS1 Gene

Previous GeneCards Identifiers for FAM83H-AS1 Gene

  • GC08P144818

Summaries for FAM83H-AS1 Gene

GeneCards Summary for FAM83H-AS1 Gene

FAM83H-AS1 (FAM83H Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM83H-AS1 Gene

Genomics for FAM83H-AS1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for FAM83H-AS1 Gene

Enhancers for FAM83H-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G143731 1.7 FANTOM5 ENCODE dbSUPER 17 +3.1 3108 11.1 HDGF PKNOX1 CREB3L1 AGO1 SIN3A ARID4B ZBTB7B ZNF143 ZNF207 FOS ENSG00000254548 FAM83H-AS1 LRRC14 FAM83H LOC105375803 ZNF696 ZNF623 CYHR1 VPS28 ENSG00000254973
GH08G143275 1.8 FANTOM5 ENCODE dbSUPER 8.1 -455.1 -455066 6.5 CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TBX21 MINCR ZFP41 ZNF623 RHPN1 HGH1 FAM83H-AS1 TOP1MT ZC3H3 TIGD5 GLI4
GH08G143263 1.4 Ensembl ENCODE dbSUPER 7.6 -469.6 -469617 1.8 HDAC1 PKNOX1 ATF1 FOXA2 FOS CREM SSRP1 SMARCA4 ZNF341 HNF4A MINCR ZNF696 LY6H FAM83H-AS1 PIR58179 GLI4
GH08G143722 1.2 ENCODE dbSUPER 7.2 -11.0 -11023 1.1 HDGF ATF1 PKNOX1 AGO1 ARID4B SIN3A ZNF2 GLIS2 ZNF143 ZNF207 FAM83H-AS1 FAM83H PIR52954 ENSG00000254548
GH08G143770 1.3 Ensembl ENCODE 6.6 +37.5 37515 2.5 CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 ZNF143 ZNF251 FAM83H ENSG00000254548 LRRC14 LOC105375803 ZNF696 ZNF623 CYHR1 TOP1MT VPS28
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM83H-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for FAM83H-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000232136 -440 1401 HDGF PKNOX1 AGO1 ARID4B SIN3A ZNF143 SP5 ZHX2 REST ZNF592

Genomic Location for FAM83H-AS1 Gene

Chromosome:
8
Start:
143,734,140 bp from pter
End:
143,790,644 bp from pter
Size:
56,505 bases
Orientation:
Plus strand

Genomic View for FAM83H-AS1 Gene

Genes around FAM83H-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM83H-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM83H-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAM83H-AS1 Gene

Proteins for FAM83H-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for FAM83H-AS1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GTG1
    Recommended name:
    FAM83H antisense RNA 1 (head to head)
    Protein Accession:
    A0A1B0GTG1

    Protein attributes for FAM83H-AS1 Gene

    Size:
    560 amino acids
    Molecular mass:
    63562 Da
    Quaternary structure:
    No Data Available

  • Protein details for FAM83H-AS1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GUK7
    Recommended name:
    FAM83H antisense RNA 1 (head to head)
    Protein Accession:
    A0A1B0GUK7

    Protein attributes for FAM83H-AS1 Gene

    Size:
    91 amino acids
    Molecular mass:
    9439 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM83H-AS1 Gene

Post-translational modifications for FAM83H-AS1 Gene

No Post-translational modifications

Other Protein References for FAM83H-AS1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for FAM83H-AS1 Gene

Domains & Families for FAM83H-AS1 Gene

Gene Families for FAM83H-AS1 Gene

HGNC:

Protein Domains for FAM83H-AS1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FAM83H-AS1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM83H-AS1 Gene

Function for FAM83H-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM83H-AS1 Gene

Localization for FAM83H-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM83H-AS1 Gene

Pathways & Interactions for FAM83H-AS1 Gene

SuperPathways for FAM83H-AS1 Gene

PathCards logo More details on SuperPathways for FAM83H-AS1
No Data Available

Interacting Proteins for FAM83H-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM83H-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM83H-AS1 Gene

Drugs & Compounds for FAM83H-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAM83H-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FAM83H-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM83H-AS1 Gene

No ASD Table

Relevant External Links for FAM83H-AS1 Gene

GeneLoc Exon Structure for
FAM83H-AS1
ECgene alternative splicing isoforms for
FAM83H-AS1

Expression for FAM83H-AS1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM83H-AS1 Gene

mRNA expression in normal human tissues for FAM83H-AS1 Gene
mRNA expression by GTEx for FAM83H-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM83H-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x11.3), Skin - Not Sun Exposed (Suprapubic) (x6.6), Skin - Sun Exposed (Lower leg) (x5.0), and Vagina (x4.8).
genes like me logo Genes that share expression patterns with FAM83H-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM83H-AS1 Gene

Orthologs for FAM83H-AS1 Gene

Evolution for FAM83H-AS1 Gene

ENSEMBL:
Gene Tree for FAM83H-AS1 (if available)
TreeFam:
Gene Tree for FAM83H-AS1 (if available)

No data available for Orthologs for FAM83H-AS1 Gene

Paralogs for FAM83H-AS1 Gene

No data available for Paralogs for FAM83H-AS1 Gene

Variants for FAM83H-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM83H-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000012694 -- 143,740,364(+) GCCTT(C/T)TCAGG intron-variant, upstream-variant-2KB
rs1000580037 -- 143,733,216(+) CCCCA(C/G/T)CCCAG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001243814 -- 143,736,108(+) GAGCC(C/T)ATTCA intron-variant
rs1001293012 -- 143,735,845(+) CACCC(C/T)CCAGG intron-variant
rs1001849388 -- 143,740,193(+) CTCCC(C/T)GCCGC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FAM83H-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2738037 CNV deletion 23290073
esv3619116 CNV loss 21293372
nsv466007 CNV loss 19166990
nsv519816 CNV loss 19592680
nsv612893 CNV loss 21841781
nsv612895 CNV loss 21841781
nsv6441 CNV insertion 18451855

Relevant External Links for FAM83H-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM83H-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM83H-AS1 Gene

Disorders for FAM83H-AS1 Gene

Relevant External Links for FAM83H-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM83H-AS1

No disorders were found for FAM83H-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM83H-AS1 Gene

Publications for FAM83H-AS1 Gene

  1. Overexpression of FAM83H-AS1 indicates poor patient survival and knockdown impairs cell proliferation and invasion via MET/EGFR signaling in lung cancer. (PMID: 28198463) Zhang J. … Chen G. (Sci Rep 2017) 2 3 64
  2. Identification of lncRNA FAM83H-AS1 as a novel prognostic marker in luminal subtype breast cancer. (PMID: 27895496) Yang F. … Wang O.C. (Onco Targets Ther 2016) 2 3 64
  3. Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function. (PMID: 25864709) Cabanski C.R. … Maher C.A. (RNA Biol 2015) 2 3 64
  4. Transcriptome sequencing reveals altered long intergenic non-coding RNAs in lung cancer. (PMID: 25116943) White N.M. … Maher C.A. (Genome Biol. 2014) 3 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for FAM83H-AS1 Gene

Sources for FAM83H-AS1 Gene

Content
Loading form....