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Aliases for FAM83D Gene

Aliases for FAM83D Gene

  • Family With Sequence Similarity 83, Member D 2 3
  • Spindle Protein CHICA 3 4
  • C20orf129 3 4
  • Chromosome 20 Open Reading Frame 129 2
  • Protein FAM83D 3
  • DJ616B8.3 3
  • CHICA 3

External Ids for FAM83D Gene

Previous HGNC Symbols for FAM83D Gene

  • C20orf129

Previous GeneCards Identifiers for FAM83D Gene

  • GC20P036989
  • GC20P037554
  • GC20P034292

Summaries for FAM83D Gene

GeneCards Summary for FAM83D Gene

FAM83D (Family With Sequence Similarity 83, Member D) is a Protein Coding gene. An important paralog of this gene is FAM83B.

UniProtKB/Swiss-Prot for FAM83D Gene

  • Required for proper chromosome congression and alignment during mitosis. Required for targeting KIF22/KID to the spindle microtubules.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM83D Gene

Genomics for FAM83D Gene

Regulatory Elements for FAM83D Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for FAM83D Gene

Start:
38,926,312 bp from pter
End:
38,953,106 bp from pter
Size:
26,795 bases
Orientation:
Plus strand

Genomic View for FAM83D Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM83D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM83D Gene

Proteins for FAM83D Gene

  • Protein details for FAM83D Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H4H8-FA83D_HUMAN
    Recommended name:
    Protein FAM83D
    Protein Accession:
    Q9H4H8
    Secondary Accessions:
    • B4E1I7
    • Q5THR2
    • Q68EN1
    • Q6P457
    • Q7Z6H0
    • Q96DF5
    • Q96N89
    • Q9BVM8

    Protein attributes for FAM83D Gene

    Size:
    585 amino acids
    Molecular mass:
    64424 Da
    Quaternary structure:
    • Interacts with KIF22/KID.
    Miscellaneous:
    • Was named CHICA (girl in Spanish) because it interacts with KID
    SequenceCaution:
    • Sequence=AAH01068.2; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAH06553.3; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAH53683.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAH63661.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAH80188.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB71016.1; Type=Erroneous termination; Positions=262; Note=Translated as Trp.; Evidence={ECO:0000305}; Sequence=CAI22033.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for FAM83D Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FAM83D Gene

Proteomics data for FAM83D Gene at MOPED

Post-translational modifications for FAM83D Gene

  • Ubiquitination at Lys149 and Lys310
  • Modification sites at PhosphoSitePlus

Other Protein References for FAM83D Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for FAM83D Gene

Domains for FAM83D Gene

Protein Domains for FAM83D Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM83D Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H4H8

UniProtKB/Swiss-Prot:

FA83D_HUMAN :
  • Q9H4H8
Family:
  • Belongs to the FAM83 family.
genes like me logo Genes that share domains with FAM83D: view

No data available for Gene Families for FAM83D Gene

Function for FAM83D Gene

Molecular function for FAM83D Gene

UniProtKB/Swiss-Prot Function:
Required for proper chromosome congression and alignment during mitosis. Required for targeting KIF22/KID to the spindle microtubules.
genes like me logo Genes that share phenotypes with FAM83D: view

Animal Model Products

CRISPR Products

miRNA for FAM83D Gene

miRTarBase miRNAs that target FAM83D

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM83D

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for FAM83D Gene

Localization for FAM83D Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM83D Gene

Cytoplasm. Cytoplasm, cytoskeleton, spindle. Cytoplasm, cytoskeleton, spindle pole. Note=Primarily cytoplasmic during interphase, but beginning in prophase, associates with spindle microtubules, with a clear concentration toward the spindle poles. It persists on spindle microtubules through metaphase and anaphase.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM83D Gene COMPARTMENTS Subcellular localization image for FAM83D gene
Compartment Confidence
cytoskeleton 5
mitochondrion 3
nucleus 1

Gene Ontology (GO) - Cellular Components for FAM83D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000922 spindle pole IEA --
GO:0005737 cytoplasm IEA --
GO:0005856 cytoskeleton --
genes like me logo Genes that share ontologies with FAM83D: view

Pathways for FAM83D Gene

SuperPathways for FAM83D Gene

No Data Available

Interacting Proteins for FAM83D Gene

Gene Ontology (GO) - Biological Process for FAM83D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007067 mitotic nuclear division IEA --
GO:0051301 cell division IEA --
genes like me logo Genes that share ontologies with FAM83D: view

No data available for Pathways by source for FAM83D Gene

Transcripts for FAM83D Gene

mRNA/cDNA for FAM83D Gene

Unigene Clusters for FAM83D Gene

Family with sequence similarity 83, member D:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM83D

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM83D Gene

No ASD Table

Relevant External Links for FAM83D Gene

GeneLoc Exon Structure for
FAM83D
ECgene alternative splicing isoforms for
FAM83D

Expression for FAM83D Gene

mRNA expression in normal human tissues for FAM83D Gene

mRNA differential expression in normal tissues according to GTEx for FAM83D Gene

This gene is overexpressed in Esophagus - Muscularis (9.4), Colon - Sigmoid (7.2), Esophagus - Mucosa (6.2), Esophagus - Gastroesophageal Junction (6.0), Small Intestine - Terminal Ileum (5.1), and Stomach (4.7).

Protein differential expression in normal tissues for FAM83D Gene

This gene is overexpressed in Cerebrospinal fluid (60.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for FAM83D Gene

SOURCE GeneReport for Unigene cluster for FAM83D Gene Hs.726442

genes like me logo Genes that share expressions with FAM83D: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Expression partners for FAM83D Gene

Orthologs for FAM83D Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM83D Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia FAM83D 35
  • 81.92 (n)
  • 80.66 (a)
FAM83D 36
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM83D 35
  • 80.99 (n)
  • 78.87 (a)
FAM83D 36
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam83d 35
  • 79.17 (n)
  • 77.8 (a)
Fam83d 16
Fam83d 36
  • 77 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia FAM83D 35
  • 98.26 (n)
  • 98.21 (a)
FAM83D 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fam83d 35
  • 80.03 (n)
  • 78.31 (a)
oppossum
(Monodelphis domestica)
Mammalia FAM83D 36
  • 68 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FAM83D 36
  • 84 (a)
OneToOne
chicken
(Gallus gallus)
Aves FAM83D 35
  • 69.48 (n)
  • 63.73 (a)
FAM83D 36
  • 53 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FAM83D 36
  • 51 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100496367 35
  • 58.09 (n)
  • 51.28 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.33403 35
zebrafish
(Danio rerio)
Actinopterygii fam83d 35
  • 53.98 (n)
  • 47.97 (a)
fam83d 36
  • 37 (a)
OneToOne
Species with no ortholog for FAM83D:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM83D Gene

ENSEMBL:
Gene Tree for FAM83D (if available)
TreeFam:
Gene Tree for FAM83D (if available)

Paralogs for FAM83D Gene

Paralogs for FAM83D Gene

Pseudogenes.org Pseudogenes for FAM83D Gene

genes like me logo Genes that share paralogs with FAM83D: view

Variants for FAM83D Gene

Sequence variations from dbSNP and Humsavar for FAM83D Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs1733 -- 38,952,863(-) AAACA(C/T)AGAAA utr-variant-3-prime
rs725322 -- 38,934,709(-) GAACA(C/T)CTGAA intron-variant
rs732486 -- 38,940,759(-) ACACC(C/T)TTTGC intron-variant
rs760843 -- 38,940,134(-) AGAAG(C/T)GTTCT intron-variant
rs926390 -- 38,933,623(-) TTAAA(A/G)AGAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM83D Gene

Variant ID Type Subtype PubMed ID
nsv3374 CNV Loss 18451855

Relevant External Links for FAM83D Gene

HapMap Linkage Disequilibrium report
FAM83D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM83D Gene

Disorders for FAM83D Gene

No disorders were found for FAM83D Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for FAM83D Gene

Publications for FAM83D Gene

  1. The spindle protein CHICA mediates localization of the chromokinesin Kid to the mitotic spindle. (PMID: 18485706) Santamaria A. … Nigg E.A. (Curr. Biol. 2008) 3 4
  2. Meta-analysis of the expression of the mitosis-related gene Fam83D. (PMID: 23205133) Varisli L. (Oncol Lett 2012) 2 3
  3. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for FAM83D Gene

Sources for FAM83D Gene

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