FAM83D Gene
protein-coding GIFtS : 41
GCID: GC20 P037554
family with sequence similarity 83, member D (Previous name: chromosome 20 open reading frame 129 ) (Previous symbol: C20orf129 )
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Aliasesfor FAM83D gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Family With Sequence Similarity 83, Member D 1 2 Chromosome 20 Open Reading Frame 1291 C20orf1291 2 3 CHICA2 DJ616B8.31 Protein FAM83D2 Spindle Protein CHICA2 3
Export aliases for FAM83D gene to outside databases Previous GC identifers: GC20P036989 GC20P034292
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Summariesfor FAM83D gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: FA83D_HUMAN, Q9H4H8 Function : Required for proper chromosome congression and alignment during mitosis. Required for targeting KIF22/KID tothe spindle microtubules
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Genomic Viewsfor FAM83D gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000020.10 NC_018931.1 NT_011362.10 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the FAM83D gene promoter: p53 Pax-5 POU3F1 E4BP4 E47 AREB6 Max Hand1 Pax-4a c-Myc Other transcription factors Search SABiosciences Chromatin IP Primers for FAM83D Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat FAM83D
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 20q11.22-q12 Ensembl cytogenetic band: 20q11.23 HGNC chromosome: 20 FAM83D Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 20 GeneLoc Exon Structure
GeneLoc location for GC20P037554: view genomic region
(about GC identifiers )
Start:
37,554,955 bp from pter
End:
37,581,703 bp from pter
Size:
26,749 bases
Orientation:
plus strand
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Proteinsfor FAM83D gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: FA83D_HUMAN, Q9H4H8 (See
protein sequence )Recommended Name: Protein FAM83D Size : 585 amino acids; 64424 Da
Subunit : Interacts with KIF22/KID
Subcellular location : Cytoplasm. Cytoplasm, cytoskeleton, spindle. Cytoplasm, cytoskeleton, spindle pole.Note=Primarily cytoplasmic during interphase, but beginning in prophase, associates with spindle microtubules, with a clear concentration toward the spindle poles. It persists on spindle microtubules through metaphase and anaphase
Miscellaneous : Was named CHICA (girl in Spanish) because it interacts with KID
Sequence caution : Sequence=AAH01068.2; Type=Erroneous initiation; Sequence=AAH06553.3; Type=Erroneous initiation;Sequence=AAH53683.1; Type=Erroneous initiation; Sequence=AAH63661.1; Type=Erroneous initiation; Sequence=AAH80188.1; Type=Erroneous initiation; Sequence=BAB71016.1; Type=Erroneous termination; Positions=262; Note=Translated as Trp; Sequence=CAI22033.1; Type=Erroneous initiation;
Secondary accessions : B4E1I7 Q5THR2 Q68EN1 Q6P457 Q7Z6H0 Q96DF5 Q96N89 Q9BVM8Alternative splicing : 2 isoforms : Q9H4H8-1 Q9H4H8-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for FAM83D: NX_Q9H4H8 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9H4H8 FAM83D Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_112181.2 ENSEMBL proteins: ENSP00000217429 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
FAM83D for ontologies About GeneDecksing FAM83D Antibody Products: Assay Products for FAM83D:
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Protein
Domains / Familiesfor FAM83D gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
FAM83D for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q9H4H8 ProtoNet protein and cluster: Q9H4H8
1 Blocks protein family : IPB012461 Protein of unknown function DUF1669 UniProtKB/Swiss-Prot: FA83D_HUMAN, Q9H4H8 Similarity : Belongs to the FAM83 family
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Functionfor FAM83D gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: FA83D_HUMAN, Q9H4H8 Function : Required for proper chromosome congression and alignment during mitosis. Required for targeting KIF22/KID tothe spindle microtubules
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for FAM83D (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for FAM83D (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: FAM83D (NM_030919 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FAM83D Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat FAM83D
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM83D
2 GenomeRNAi human phenotypes for FAM83D :
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Pathways & Interactionsfor FAM83D gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FAM83D STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)5 Interacting proteins for FAM83D (Q9H4H8 2 , 3 ENSP00000217429 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 2 biological process terms (GO ID links to tree view) : About this table
FAM83D for ontologies About GeneDecksing
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Drugs & Compoundsfor FAM83D gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for FAM83D Search CenterWatch for drugs/clinical trials and news about FAM83D / FA83D
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Transcriptsfor FAM83D gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for FAM83D gene: NM_030919.2 Unigene Cluster for FAM83D:
Family with sequence similarity 83, member D Hs.726442 [show with all ESTs ] Unigene Representative Sequence: AL832274 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000217429 (uc002xjf.3 uc002xjg.3 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for FAM83D (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for FAM83D (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: FAM83D (NM_030919 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FAM83D Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat FAM83D
Additional cDNA sequence: AK055793.1 AK095660.1 AK303860.1 AL832274.1 BC001068.2 BC006553.2 BC053683.1 BC063661.1 BC080188.1
6 DOTS entries : DT.213157 DT.100832065
DT.40219684 DT.100024967 DT.100807246 DT.100660631 24/353 AceView cDNA sequences (see all 353 ):
BQ063362 AW500225 AA809943 BQ008740 AI057204 Z43700 AA743441 AA488678 AI689511 BG180317 AA639374 CA428446 BU859390 BQ883443 AA279989 BM722056 AW576471 AI796725 CF143914 BQ642453 BM470066 AW000961 BQ058014 AA323743 GeneLoc Exon Structure
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Expression for FAM83D gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section FAM83D expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: ATGTACAGGT
About this image FAM83D expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See FAM83D Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for FAM83D SOURCE GeneReport for Unigene cluster: Hs.726442 SABiosciences Custom PCR Arrays for FAM83D Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for FAM83DBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse / rat FAM83D QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat FAM83D QIAGEN QuantiFast Probe-based Assays in human , mouse , rat FAM83D In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM83D
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Orthologsfor FAM83D gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for FAM83D gene from 4/11 species (see all 11 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
FAM83D1
family with sequence similarity 83, member D
62.11(n) 54.86(a)
 
425103 XM_422895.3 XP_422895.3
lizard (Anolis carolinensis)
Reptilia
FAM83D6
--
47(a)
1 ↔ 1
4(140929360-140953560)
African clawed frog (Xenopus laevis)
Amphibia
Xl.334032
Xenopus laevis transcribed sequence with weak similarity more
72.45(n)
 
CA788959.1
zebrafish (Danio rerio)
Actinopterygii
fam83d1
family with sequence similarity 83, member D
54.2(n) 48.09(a)
 
492689 NM_001089355.1 NP_001082824.1
ENSEMBL Gene Tree for FAM83D (if available)TreeFam Gene Tree for FAM83D (if available)
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Paralogsfor FAM83D gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for FAM83D gene FAM83C 2 FAM83H 2 FAM83G 2 FAM83E 2 FAM83A 2 FAM83B 2 FAM83F 2
FAM83D for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for FAM83D PGOHUM00000247655
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Genomic Variantsfor FAM83D gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 20 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for FAM83D (37554955 - 37581703 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for FAM83D: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing FAM83D
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Disorders
/ Diseasesfor FAM83D gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section --
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Publicationsfor FAM83D gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for FAM83D gene, integrated from 9 sources (see all 17 ): (articles sorted by number of sources associating them with FAM83D) Utopia : connect your pdf to the dynamic world of online information
The spindle protein CHICA mediates localization of the chromokinesin Kid to the mitotic spindle. (PubMed id 18485706) 1 , 2 Santamaria A....Nigg E.A. (2008) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052) 1 , 2 Deloukas P....Rogers J. (2001) The proteomic analysis of endogenous FAT10 substrates identifies p62/SQSTM1 as a substrate of FAT10ylation. (PubMed id 22797925) 1 Aichem A....Groettrup M. (2012) A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473) 1 Wagner S.A....Choudhary C. (2011) A directed protein interaction network for investigat ing intracellular signal transduction. (PubMed id 21900206) 1 Vinayagam A....Wanker E.E. (2011) Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983) 1 Kim W....Gygi S.P. (2011) Ubiquitin ligase substrate identification through qua ntitative proteomics at both the protein and peptide levels. (PubMed id 21987572) 1 Lee K.A....Doedens J.R. (2011) Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048) 1 Danielsen J.M....Nielsen M.L. (2011)
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External Searches for FAM83D gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing FAM83D gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing FAM83D gene
(According to HUGE )
About This Section --
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Specialized Databases showing FAM83D gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for FAM83D Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for FAM83D gene: Search GeneIP for patents involving FAM83D GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor FAM83D gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for FAM83D OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for FAM83D OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for FAM83D OriGene Protein Over-expression Lysate for FAM83D Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for FAM83D OriGene 3'-UTR Clone for FAM83D OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for FAM83D OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for FAM83D Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for FAM83D OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for FAM83D OriGene Custom Protein Services for FAM83D OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat FAM83D QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing FAM83D QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat FAM83D QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat FAM83D QIAGEN QuantiFast Probe-based Assays in human , mouse , rat FAM83D QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat FAM83D
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FAM83D Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM83D
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Aliases for FAM83D
Databases for FAM83D
Disorders / Diseases for FAM83D
Domains / Families for FAM83D
Drugs / Compounds for FAM83D
Expression for FAM83D
Function for FAM83D
Genomic Views for FAM83D
Intellectual Property for FAM83D
Orthologs for FAM83D
Paralogs for FAM83D
Pathways / Interactions for FAM83D
Products for FAM83D
Proteins for FAM83D
Publications for FAM83D
Search Box for FAM83D
Summaries for FAM83D
Transcripts for FAM83D
Variants for FAM83D
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