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Aliases for FAM83C-AS1 Gene

Subcategory (RNA class) for FAM83C-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM83C-AS1 Gene

  • FAM83C Antisense RNA 1 2 3 5
  • FAM83C Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 20 Open Reading Frame 120 2
  • Non-Protein Coding RNA 154 2
  • NCRNA00154 3
  • DJ614O4.3 3
  • C20orf120 3

External Ids for FAM83C-AS1 Gene

Previous HGNC Symbols for FAM83C-AS1 Gene

  • C20orf120
  • NCRNA00154

Previous GeneCards Identifiers for FAM83C-AS1 Gene

  • GC20U900691
  • GC20P033875

Summaries for FAM83C-AS1 Gene

GeneCards Summary for FAM83C-AS1 Gene

FAM83C-AS1 (FAM83C Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM83C-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM83C-AS1 Gene

Genomics for FAM83C-AS1 Gene

GeneHancer (GH) Regulatory Elements for FAM83C-AS1 Gene

Promoters and enhancers for FAM83C-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I035283 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 -0.1 -71 3.9 MLX ZFP64 DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC MEF2D EIF6 FAM83C-AS1 RBM12 ERGIC3 RBM39 NCOA6 CPNE1 AAR2 TRPC4AP RPL36P4
GH20I035317 Enhancer 1.9 VISTA FANTOM5 Ensembl ENCODE dbSUPER 12.1 +34.5 34497 5.1 PKNOX1 FOXA2 ARNT FEZF1 FOS SP3 MIER3 ZNF610 ZSCAN16 GLIS1 UQCC1 EIF6 FAM83C MMP24 FAM83C-AS1 MMP24OS NCOA6 EDEM2 RBM12 MIR499A
GH20I035324 Enhancer 1.4 Ensembl ENCODE dbSUPER 11.5 +42.3 42349 5.3 FOXA2 MLX ARID4B DMAP1 YY1 SLC30A9 ZNF143 FOS DEK SP5 UQCC1 FAM83C EIF6 FAM83C-AS1 MMP24OS EDEM2 GDF5OS MMP24 CPNE1 FER1L4
GH20I035096 Enhancer 1 Ensembl ENCODE 10 -188.8 -188750 1 NFIB ZNF48 RAD21 ZEB1 ZNF335 ZNF121 ZNF143 ATF7 THAP11 MIXL1 GC20M035089 RBM12 RBM39 CPNE1 ERGIC3 RPL36P4 ENSG00000201151 TRPC4AP EDEM2 MMP24OS
GH20I035337 Enhancer 0.8 ENCODE dbSUPER 11.4 +54.2 54163 3.2 CEBPB ZNF121 ZFHX2 POLR2A ZNF341 GLIS1 HMBOX1 WT1 EGR2 UQCC1 MMP24OS FAM83C EIF6 FAM83C-AS1 GDF5OS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM83C-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM83C-AS1 Gene

Genomic Locations for FAM83C-AS1 Gene
chr20:35,285,251-35,285,772
(GRCh38/hg38)
Size:
522 bases
Orientation:
Plus strand
chr20:33,873,054-33,873,559
(GRCh37/hg19)

Genomic View for FAM83C-AS1 Gene

Genes around FAM83C-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM83C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM83C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM83C-AS1 Gene

Proteins for FAM83C-AS1 Gene

Post-translational modifications for FAM83C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM83C-AS1 Gene

Domains & Families for FAM83C-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM83C-AS1 Gene

Function for FAM83C-AS1 Gene

Phenotypes From GWAS Catalog for FAM83C-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM83C-AS1 Gene

Localization for FAM83C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM83C-AS1 Gene

Pathways & Interactions for FAM83C-AS1 Gene

SuperPathways for FAM83C-AS1 Gene

No Data Available

Interacting Proteins for FAM83C-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM83C-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM83C-AS1 Gene

Drugs & Compounds for FAM83C-AS1 Gene

No Compound Related Data Available

Transcripts for FAM83C-AS1 Gene

mRNA/cDNA for FAM83C-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM83C-AS1 Gene

No ASD Table

Relevant External Links for FAM83C-AS1 Gene

GeneLoc Exon Structure for
FAM83C-AS1
ECgene alternative splicing isoforms for
FAM83C-AS1

Expression for FAM83C-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM83C-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM83C-AS1 Gene

This gene is overexpressed in Testis (x20.7).
genes like me logo Genes that share expression patterns with FAM83C-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM83C-AS1 Gene

Orthologs for FAM83C-AS1 Gene

Evolution for FAM83C-AS1 Gene

ENSEMBL:
Gene Tree for FAM83C-AS1 (if available)
TreeFam:
Gene Tree for FAM83C-AS1 (if available)

No data available for Orthologs for FAM83C-AS1 Gene

Paralogs for FAM83C-AS1 Gene

No data available for Paralogs for FAM83C-AS1 Gene

Variants for FAM83C-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM83C-AS1 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000739399 -- 35,283,328(+) G/A upstream_transcript_variant
rs1002749965 -- 35,285,889(+) C/T downstream_transcript_variant
rs1003107334 -- 35,286,267(+) C/T downstream_transcript_variant
rs1003651683 -- 35,283,257(+) G/T upstream_transcript_variant
rs1003920525 -- 35,285,498(+) G/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM83C-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1059168 CNV loss 25217958
nsv585943 CNV loss 21841781
nsv954029 CNV deletion 24416366

Additional Variant Information for FAM83C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM83C-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM83C-AS1 Gene

Disorders for FAM83C-AS1 Gene

Additional Disease Information for FAM83C-AS1

No disorders were found for FAM83C-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM83C-AS1 Gene

Publications for FAM83C-AS1 Gene

No publications were found for FAM83C-AS1 Gene.

Products for FAM83C-AS1 Gene

Sources for FAM83C-AS1 Gene

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