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Aliases for FAM83C-AS1 Gene

Subcategory (RNA class) for FAM83C-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM83C-AS1 Gene

  • FAM83C Antisense RNA 1 2 3 5
  • FAM83C Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 20 Open Reading Frame 120 2
  • Non-Protein Coding RNA 154 2
  • NCRNA00154 3
  • DJ614O4.3 3
  • C20orf120 3

External Ids for FAM83C-AS1 Gene

Previous HGNC Symbols for FAM83C-AS1 Gene

  • C20orf120
  • NCRNA00154

Previous GeneCards Identifiers for FAM83C-AS1 Gene

  • GC20U900691
  • GC20P033875

Summaries for FAM83C-AS1 Gene

GeneCards Summary for FAM83C-AS1 Gene

FAM83C-AS1 (FAM83C Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM83C-AS1 Gene

Genomics for FAM83C-AS1 Gene

Regulatory Elements for FAM83C-AS1 Gene

Enhancers for FAM83C-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F035317 1.3 VISTA FANTOM5 Ensembl ENCODE 12.1 +34.4 34404 5.3 PKNOX1 ARID4B SIN3A DMAP1 FEZF1 YY1 SLC30A9 FOS ZNF263 SP3 UQCC1 RBM12 EIF6 FAM83C AAR2 CPNE1 MMP24 NCOA6 FAM83C-AS1 MMP24-AS1
GH20F035324 1.1 Ensembl ENCODE 11.4 +42.4 42350 5.3 HDGF MLX ARID4B DMAP1 YY1 SLC30A9 ZNF143 FOS DEK SP5 UQCC1 FAM83C EIF6 FAM83C-AS1 MMP24-AS1 EDEM2 GDF5OS MMP24 CPNE1 FER1L4
GH20F035337 0.6 Ensembl ENCODE 11.4 +54.2 54164 3.2 CTCF BHLHE40 CEBPB REST ZNF121 ZFHX2 RAD51 JUND ZNF341 GLIS1 UQCC1 MMP24-AS1 FAM83C EIF6 FAM83C-AS1 GDF5OS
GH20F035257 0.7 Ensembl 11.2 -27.7 -27650 0.4 SCRT1 CEBPB REST ARID1B ZNF664 ZFHX2 JUND IKZF1 RCOR1 EGR2 MMP24 MMP24-AS1 FAM83C-AS1 EIF6 FAM83C ENSG00000201151 ENSG00000279253 GC20M035263
GH20F035367 0.5 ENCODE 10.9 +84.5 84540 4.2 HLF MAX FEZF1 MNT FOS PRDM10 MAFK MYC ZNF652 UQCC1 FAM83C EIF6 FAM83C-AS1 GDF5 MIR1289-1 CEP250 MMP24-AS1 MMP24 NCOA6
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FAM83C-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for FAM83C-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000400259 -451 2001 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for FAM83C-AS1 Gene

Chromosome:
20
Start:
35,285,251 bp from pter
End:
35,285,772 bp from pter
Size:
522 bases
Orientation:
Plus strand

Genomic View for FAM83C-AS1 Gene

Genes around FAM83C-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM83C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM83C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM83C-AS1 Gene

Proteins for FAM83C-AS1 Gene

Post-translational modifications for FAM83C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM83C-AS1 Gene

Domains & Families for FAM83C-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM83C-AS1 Gene

Function for FAM83C-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM83C-AS1 Gene

Localization for FAM83C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM83C-AS1 Gene

Pathways & Interactions for FAM83C-AS1 Gene

SuperPathways for FAM83C-AS1 Gene

No Data Available

Interacting Proteins for FAM83C-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM83C-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM83C-AS1 Gene

Transcripts for FAM83C-AS1 Gene

mRNA/cDNA for FAM83C-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM83C-AS1 Gene

No ASD Table

Relevant External Links for FAM83C-AS1 Gene

GeneLoc Exon Structure for
FAM83C-AS1
ECgene alternative splicing isoforms for
FAM83C-AS1

Expression for FAM83C-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM83C-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM83C-AS1 Gene

This gene is overexpressed in Testis (x20.7).
genes like me logo Genes that share expression patterns with FAM83C-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM83C-AS1 Gene

Orthologs for FAM83C-AS1 Gene

Evolution for FAM83C-AS1 Gene

ENSEMBL:
Gene Tree for FAM83C-AS1 (if available)
TreeFam:
Gene Tree for FAM83C-AS1 (if available)

No data available for Orthologs for FAM83C-AS1 Gene

Paralogs for FAM83C-AS1 Gene

No data available for Paralogs for FAM83C-AS1 Gene

Variants for FAM83C-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM83C-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs10589779 -- 35,285,934(+) TGATG(-/GT/TG)TGTGT downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs113084671 -- 35,284,013(+) CTAGA(C/G)GGTTG intron-variant, upstream-variant-2KB
rs113330928 -- 35,284,724(+) AGCTT(A/G/T)CCAAG upstream-variant-2KB, splice-donor-variant
rs11346452 -- 35,286,024(+) ATCTC(-/T)TTCAC downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs113527713 -- 35,284,199(+) TGATG(C/G)GGCAG intron-variant, nc-transcript-variant, upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for FAM83C-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1059168 CNV loss 25217958
nsv585943 CNV loss 21841781
nsv954029 CNV deletion 24416366

Relevant External Links for FAM83C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM83C-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM83C-AS1 Gene

Disorders for FAM83C-AS1 Gene

Relevant External Links for FAM83C-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM83C-AS1

No disorders were found for FAM83C-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM83C-AS1 Gene

Publications for FAM83C-AS1 Gene

No publications were found for FAM83C-AS1 Gene.

Products for FAM83C-AS1 Gene

Sources for FAM83C-AS1 Gene

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