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Aliases for FAM83B Gene

Aliases for FAM83B Gene

  • Family With Sequence Similarity 83 Member B 2 3 5
  • Family With Sequence Similarity 83, Member B 2 3
  • C6orf143 3 4
  • Chromosome 6 Open Reading Frame 143 2

External Ids for FAM83B Gene

Previous HGNC Symbols for FAM83B Gene

  • C6orf143

Previous GeneCards Identifiers for FAM83B Gene

  • GC06P054820
  • GC06P054711
  • GC06P054545

Summaries for FAM83B Gene

GeneCards Summary for FAM83B Gene

FAM83B (Family With Sequence Similarity 83 Member B) is a Protein Coding gene. Diseases associated with FAM83B include lung squamous cell carcinoma. An important paralog of this gene is FAM83C.

UniProtKB/Swiss-Prot for FAM83B Gene

  • Probable proto-oncogene that functions in the epidermal growth factor receptor/EGFR signaling pathway. May activate both the EGFR itself and downstream RAS/MAPK and PI3K/AKT/TOR signaling cascades.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM83B Gene

Genomics for FAM83B Gene

Regulatory Elements for FAM83B Gene

Promoters for FAM83B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around FAM83B on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM83B Gene

Chromosome:
6
Start:
54,846,643 bp from pter
End:
54,945,099 bp from pter
Size:
98,457 bases
Orientation:
Plus strand

Genomic View for FAM83B Gene

Genes around FAM83B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM83B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM83B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM83B Gene

Proteins for FAM83B Gene

  • Protein details for FAM83B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T0W9-FA83B_HUMAN
    Recommended name:
    Protein FAM83B
    Protein Accession:
    Q5T0W9
    Secondary Accessions:
    • Q2M1P3
    • Q96DQ2

    Protein attributes for FAM83B Gene

    Size:
    1011 amino acids
    Molecular mass:
    114799 Da
    Quaternary structure:
    • Interacts with EGFR; the interaction is disrupted by EGF stimulation (PubMed:23912460). Interacts with RAF1; displaces 14-3-3 proteins from RAF1 and activates RAF1 within the RAS/MAPK signaling cascade (PubMed:22886302). Interacts with AKT1, PIK3CA and PIK3R1; activates the PI3K/AKT signaling cascade (PubMed:23676467).

neXtProt entry for FAM83B Gene

Proteomics data for FAM83B Gene at MOPED

Post-translational modifications for FAM83B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM83B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM83B Gene

Domains & Families for FAM83B Gene

Protein Domains for FAM83B Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM83B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5T0W9

UniProtKB/Swiss-Prot:

FA83B_HUMAN :
  • Belongs to the FAM83 family.
Family:
  • Belongs to the FAM83 family.
genes like me logo Genes that share domains with FAM83B: view

No data available for Gene Families for FAM83B Gene

Function for FAM83B Gene

Molecular function for FAM83B Gene

UniProtKB/Swiss-Prot Function:
Probable proto-oncogene that functions in the epidermal growth factor receptor/EGFR signaling pathway. May activate both the EGFR itself and downstream RAS/MAPK and PI3K/AKT/TOR signaling cascades.

Gene Ontology (GO) - Molecular Function for FAM83B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004630 NOT phospholipase D activity IDA 22886302
GO:0005154 epidermal growth factor receptor binding IPI 23912460
GO:0036312 phosphatidylinositol 3-kinase regulatory subunit binding IPI 23676467
genes like me logo Genes that share ontologies with FAM83B: view
genes like me logo Genes that share phenotypes with FAM83B: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM83B Gene

Localization for FAM83B Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM83B Gene

Cytoplasm. Membrane.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM83B Gene COMPARTMENTS Subcellular localization image for FAM83B gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for FAM83B Gene

Pathways & Interactions for FAM83B Gene

SuperPathways for FAM83B Gene

No Data Available

Interacting Proteins for FAM83B Gene

Gene Ontology (GO) - Biological Process for FAM83B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007173 epidermal growth factor receptor signaling pathway IMP 22886302
genes like me logo Genes that share ontologies with FAM83B: view

No data available for Pathways by source and SIGNOR curated interactions for FAM83B Gene

Drugs & Compounds for FAM83B Gene

No Compound Related Data Available

Transcripts for FAM83B Gene

mRNA/cDNA for FAM83B Gene

(4) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM83B Gene

Family with sequence similarity 83, member B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM83B Gene

No ASD Table

Relevant External Links for FAM83B Gene

GeneLoc Exon Structure for
FAM83B
ECgene alternative splicing isoforms for
FAM83B

Expression for FAM83B Gene

mRNA expression in normal human tissues for FAM83B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FAM83B Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x11.6), Skin - Sun Exposed (Lower leg) (x10.6), Esophagus - Mucosa (x8.5), and Vagina (x4.8).

Protein differential expression in normal tissues from HIPED for FAM83B Gene

This gene is overexpressed in Placenta (54.0) and Islet of Langerhans (9.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for FAM83B Gene



SOURCE GeneReport for Unigene cluster for FAM83B Gene Hs.152423

genes like me logo Genes that share expression patterns with FAM83B: view

Protein tissue co-expression partners for FAM83B Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for FAM83B Gene

Orthologs for FAM83B Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM83B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM83B 35
  • 99.44 (n)
  • 99.21 (a)
FAM83B 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM83B 36
  • 84 (a)
OneToOne
FAM83B 35
  • 85.05 (n)
  • 84.18 (a)
dog
(Canis familiaris)
Mammalia FAM83B 35
  • 89.44 (n)
  • 89.01 (a)
FAM83B 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam83b 16
Fam83b 36
  • 81 (a)
OneToOne
Fam83b 35
  • 82.2 (n)
  • 81.5 (a)
oppossum
(Monodelphis domestica)
Mammalia FAM83B 36
  • 78 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FAM83B 36
  • 75 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fam83b 35
  • 81.89 (n)
  • 82.22 (a)
chicken
(Gallus gallus)
Aves FAM83B 35
  • 70.76 (n)
  • 67.37 (a)
FAM83B 36
  • 65 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FAM83B 36
  • 61 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fam83b 35
  • 62.13 (n)
  • 56.44 (a)
zebrafish
(Danio rerio)
Actinopterygii fam83b 36
  • 37 (a)
OneToOne
fam83b 35
  • 51.1 (n)
  • 42.84 (a)
Species with no ortholog for FAM83B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM83B Gene

ENSEMBL:
Gene Tree for FAM83B (if available)
TreeFam:
Gene Tree for FAM83B (if available)

Paralogs for FAM83B Gene

Paralogs for FAM83B Gene

genes like me logo Genes that share paralogs with FAM83B: view

Variants for FAM83B Gene

Sequence variations from dbSNP and Humsavar for FAM83B Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs13211183 - 54,940,200(+) AACCA(A/G)TAATC reference, missense
rs9475076 - 54,940,276(+) GTAAG(C/G/T)CACCA reference, missense
rs239798 - 54,940,890(+) ATATA(A/C)AACCT reference, missense
rs9475077 - 54,941,691(+) TGTTA(A/C)CCCTG reference, missense
rs181155 -- 54,887,895(-) ACTAT(A/G)CACTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM83B Gene

Variant ID Type Subtype PubMed ID
nsv885900 CNV Gain 21882294
esv269420 CNV Insertion 20981092
esv2732102 CNV Deletion 23290073
nsv5308 CNV Insertion 18451855
esv2675172 CNV Deletion 23128226
esv2732103 CNV Deletion 23290073
esv271389 CNV Insertion 20981092
esv2678553 CNV Deletion 23128226
esv2732104 CNV Deletion 23290073

Variation tolerance for FAM83B Gene

Residual Variation Intolerance Score: 12.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.35; 90.77% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM83B Gene

HapMap Linkage Disequilibrium report
FAM83B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM83B Gene

Disorders for FAM83B Gene

MalaCards: The human disease database

(1) MalaCards diseases for FAM83B Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
lung squamous cell carcinoma
  • epidermoid cell carcinoma of the lung
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for FAM83B

Genetic Association Database (GAD)
FAM83B
Human Genome Epidemiology (HuGE) Navigator
FAM83B
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM83B
genes like me logo Genes that share disorders with FAM83B: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FAM83B Gene

Publications for FAM83B Gene

  1. FAM83B mediates EGFR- and RAS-driven oncogenic transformation. (PMID: 22886302) Cipriano R. … Jackson M.W. (J. Clin. Invest. 2012) 2 3 4 67
  2. FAM83B is a novel biomarker for diagnosis and prognosis of lung squamous cell carcinoma. (PMID: 25586059) Okabe N. … Suzuki H. (Int. J. Oncol. 2015) 3
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  4. Identifying biological pathways that underlie primordial short stature using network analysis. (PMID: 24711643) Hanson D. … Clayton P.E. (J. Mol. Endocrinol. 2014) 3
  5. Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. (PMID: 25231870) Perry J.R. … Ong K.K. (Nature 2014) 3

Products for FAM83B Gene

Sources for FAM83B Gene

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