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Aliases for FAM83A-AS1 Gene

Subcategory (RNA class) for FAM83A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM83A-AS1 Gene

  • FAM83A Antisense RNA 1 2 3 5
  • HCC-Related HCC-C11_v3 3
  • HCCC11_v1 3
  • HCCC11_v2 3
  • HCCC11 3

External Ids for FAM83A-AS1 Gene

Previous GeneCards Identifiers for FAM83A-AS1 Gene

  • GC08M124215

Summaries for FAM83A-AS1 Gene

GeneCards Summary for FAM83A-AS1 Gene

FAM83A-AS1 (FAM83A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM83A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM83A-AS1 Gene

Genomics for FAM83A-AS1 Gene

Regulatory Elements for FAM83A-AS1 Gene

Enhancers for FAM83A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H123181 1.6 Ensembl ENCODE dbSUPER 14 +19.4 19385 4.5 HDGF PKNOX1 ARNT SIN3A ZBTB7B ZNF766 CBX5 FOS SMARCB1 ZNF592 FAM83A-AS1 FAM83A WDYHV1 ENSG00000253258 ENSG00000253410
GH08H123148 1.1 ENCODE dbSUPER 14.8 +53.5 53460 1.4 LEF1 TAL1 JUN INSM2 FOSL1 TCF12 ZNF316 NCOR1 TRIM24 NFE2 FAM83A FAM83A-AS1 ENSG00000253258 ENSG00000221461 TBC1D31 DERL1 ENSG00000238901 ENSG00000253607 RNU6-875P MIR548AA1
GH08H123178 1.4 Ensembl ENCODE dbSUPER 11.4 +23.3 23318 2.7 HDAC1 PKNOX1 ATF1 TBL1XR1 BATF TCF12 ZNF766 GATA2 ATF7 ETV6 FAM83A FAM83A-AS1 WDYHV1 ENSG00000221461 GC08M123182
GH08H123155 1.7 Ensembl ENCODE dbSUPER 8.6 +45.2 45232 3.8 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 PPARGC1A SSRP1 GLIS1 NBN NR2C1 FAM91A1 DERL1 LOC105375738 ENSG00000254249 FER1L6-AS1 LOC392268 ENSG00000254000 ARF1P3 FAM83A C8orf76
GH08H123471 1.2 Ensembl ENCODE dbSUPER 10 -272.2 -272224 6.9 SMARCA5 CTCF JUN MAFG REST THRB RAD21 NR2F2 ZNF316 MAFF WDYHV1 FBXO32 ATAD2 LOC105375738 FAM91A1 FAM83A-AS1 MIR548AA1 DUTP2 RNU6-875P FAM83A
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM83A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM83A-AS1 Gene

Genomic Locations for FAM83A-AS1 Gene
chr8:123,201,172-123,202,743
(GRCh38/hg38)
Size:
1,572 bases
Orientation:
Minus strand
chr8:124,213,412-124,214,983
(GRCh37/hg19)

Genomic View for FAM83A-AS1 Gene

Genes around FAM83A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM83A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM83A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM83A-AS1 Gene

Proteins for FAM83A-AS1 Gene

Post-translational modifications for FAM83A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM83A-AS1 Gene

Domains & Families for FAM83A-AS1 Gene

Suggested Antigen Peptide Sequences for FAM83A-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for FAM83A-AS1 Gene

Function for FAM83A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM83A-AS1 Gene

Localization for FAM83A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM83A-AS1 Gene

Pathways & Interactions for FAM83A-AS1 Gene

SuperPathways for FAM83A-AS1 Gene

No Data Available

Interacting Proteins for FAM83A-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM83A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM83A-AS1 Gene

Drugs & Compounds for FAM83A-AS1 Gene

No Compound Related Data Available

Transcripts for FAM83A-AS1 Gene

mRNA/cDNA for FAM83A-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM83A-AS1 Gene

No ASD Table

Relevant External Links for FAM83A-AS1 Gene

GeneLoc Exon Structure for
FAM83A-AS1
ECgene alternative splicing isoforms for
FAM83A-AS1

Expression for FAM83A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM83A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM83A-AS1 Gene

This gene is overexpressed in Liver (x19.4), Esophagus - Mucosa (x13.5), Vagina (x7.4), and Cervix - Ectocervix (x7.0).
genes like me logo Genes that share expression patterns with FAM83A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM83A-AS1 Gene

Orthologs for FAM83A-AS1 Gene

Evolution for FAM83A-AS1 Gene

ENSEMBL:
Gene Tree for FAM83A-AS1 (if available)
TreeFam:
Gene Tree for FAM83A-AS1 (if available)

No data available for Orthologs for FAM83A-AS1 Gene

Paralogs for FAM83A-AS1 Gene

No data available for Paralogs for FAM83A-AS1 Gene

Variants for FAM83A-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM83A-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000874851 -- 123,201,488(+) ATTTT(A/G)CCCTT intron-variant
rs1002188052 -- 123,203,979(+) AGGAC(A/C)AAAAA intron-variant, upstream-variant-2KB
rs1002380062 -- 123,201,900(+) AGAGG(A/G)AGCCA intron-variant, nc-transcript-variant
rs1002787637 -- 123,202,371(+) TTACT(C/G)TTTAT intron-variant, nc-transcript-variant
rs1002828230 -- 123,202,870(+) TTCCA(A/C)GAATA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FAM83A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1032827 CNV gain 25217958

Relevant External Links for FAM83A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM83A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM83A-AS1 Gene

Disorders for FAM83A-AS1 Gene

Relevant External Links for FAM83A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM83A-AS1

No disorders were found for FAM83A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM83A-AS1 Gene

Publications for FAM83A-AS1 Gene

No publications were found for FAM83A-AS1 Gene.

Products for FAM83A-AS1 Gene

Sources for FAM83A-AS1 Gene

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