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Aliases for FAM81B Gene

Aliases for FAM81B Gene

  • Family With Sequence Similarity 81, Member B 2 3

External Ids for FAM81B Gene

Summaries for FAM81B Gene

GeneCards Summary for FAM81B Gene

FAM81B (Family With Sequence Similarity 81, Member B) is a Protein Coding gene. An important paralog of this gene is FAM81A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM81B Gene

Genomics for FAM81B Gene

Genomic Location for FAM81B Gene

Start:
95,391,344 bp from pter
End:
95,450,454 bp from pter
Size:
59,111 bases
Orientation:
Plus strand

Genomic View for FAM81B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM81B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM81B Gene

Regulatory Elements for FAM81B Gene

Proteins for FAM81B Gene

  • Protein details for FAM81B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96LP2-FA81B_HUMAN
    Recommended name:
    Protein FAM81B
    Protein Accession:
    Q96LP2
    Secondary Accessions:

    Protein attributes for FAM81B Gene

    Size:
    452 amino acids
    Molecular mass:
    52032 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH34772.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=BAB71646.1; Type=Frameshift; Positions=24; Evidence={ECO:0000305};

neXtProt entry for FAM81B Gene

Proteomics data for FAM81B Gene at MOPED

Post-translational modifications for FAM81B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM81B Gene

No data available for DME Specific Peptides for FAM81B Gene

Domains for FAM81B Gene

Protein Domains for FAM81B Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

FA81B_HUMAN
Family:
  • Belongs to the FAM81 family.:
    • Q96LP2
genes like me logo Genes that share domains with FAM81B: view

No data available for Gene Families for FAM81B Gene

Function for FAM81B Gene

Gene Ontology (GO) - Molecular Function for FAM81B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with FAM81B: view

Phenotypes for FAM81B Gene

GenomeRNAi human phenotypes for FAM81B:
genes like me logo Genes that share phenotypes with FAM81B: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM81B Gene

Localization for FAM81B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM81B Gene COMPARTMENTS Subcellular localization image for FAM81B gene
Compartment Confidence
nucleus 3
cytosol 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for FAM81B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
genes like me logo Genes that share ontologies with FAM81B: view

Pathways for FAM81B Gene

SuperPathways for FAM81B Gene

No Data Available

Interacting Proteins for FAM81B Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000283357%0d%0a9606.ENSP00000257700%0d%0a
Selected Interacting proteins: ENSP00000283357 Q96LP2-FA81B_HUMAN for FAM81B Gene via STRING UniProtKB

Gene Ontology (GO) - Biological Process for FAM81B Gene

None

No data available for Pathways by source for FAM81B Gene

Transcripts for FAM81B Gene

Unigene Clusters for FAM81B Gene

Family with sequence similarity 81, member B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM81B Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12 ^ 13 ^ 14
SP1: - - - -
SP2: - - -
SP3: - - - - -
SP4: - - - - -
SP5: - - - - -
SP6: -
SP7:

Relevant External Links for FAM81B Gene

GeneLoc Exon Structure for
FAM81B
ECgene alternative splicing isoforms for
FAM81B

Expression for FAM81B Gene

mRNA expression in normal human tissues for FAM81B Gene

mRNA differential expression in normal tissues according to GTEx for FAM81B Gene

This gene is overexpressed in Testis (31.9).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for FAM81B Gene

SOURCE GeneReport for Unigene cluster for FAM81B Gene Hs.276287

genes like me logo Genes that share expressions with FAM81B: view

Orthologs for FAM81B Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM81B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM81B 36
  • 99.41 (n)
  • 98.67 (a)
FAM81B 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM81B 36
  • 85.88 (n)
  • 78.93 (a)
FAM81B 37
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM81B 36
  • 88.94 (n)
  • 85.25 (a)
FAM81B 37
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam81b 36
  • 83.41 (n)
  • 79.37 (a)
Fam81b 16
oppossum
(Monodelphis domestica)
Mammalia FAM81B 37
  • 55 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FAM81B 37
  • 55 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fam81b 36
  • 83.01 (n)
  • 79.95 (a)
chicken
(Gallus gallus)
Aves FAM81B 36
  • 60.73 (n)
  • 48.94 (a)
FAM81B 37
  • 43 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FAM81B 37
  • 47 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fam81b 36
  • 60.13 (n)
  • 46.59 (a)
zebrafish
(Danio rerio)
Actinopterygii FAM81B 37
  • 37 (a)
OneToOne
LOC101886959 36
  • 50 (n)
  • 37.5 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 24 (a)
OneToMany
Species with no ortholog for FAM81B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM81B Gene

ENSEMBL:
Gene Tree for FAM81B (if available)
TreeFam:
Gene Tree for FAM81B (if available)

Paralogs for FAM81B Gene

Paralogs for FAM81B Gene

Selected SIMAP similar genes for FAM81B Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with FAM81B: view

Variants for FAM81B Gene

Sequence variations from dbSNP and Humsavar for FAM81B Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs33892 -- 95,392,374(-) actat(C/T)cctcc intron-variant, upstream-variant-2KB
rs33893 -- 95,394,065(-) AGCCA(C/T)TGATG intron-variant
rs33894 -- 95,395,643(-) CATGA(C/T)TTACC intron-variant, upstream-variant-2KB
rs33895 -- 95,397,052(-) AGTTC(A/C)AGGTG intron-variant
rs41121 -- 95,394,636(-) CCCCT(A/C)GAGAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FAM81B Gene

Variant ID Type Subtype PubMed ID
esv2634786 CNV Insertion 19546169
nsv882388 CNV Loss 21882294

Relevant External Links for FAM81B Gene

HapMap Linkage Disequilibrium report
FAM81B
Human Gene Mutation Database (HGMD)
FAM81B

Disorders for FAM81B Gene

Relevant External Links for FAM81B

Genetic Association Database (GAD)
FAM81B
Human Genome Epidemiology (HuGE) Navigator
FAM81B
genes like me logo Genes that share disorders with FAM81B: view

No data available for UniProtKB/Swiss-Prot for FAM81B Gene

Publications for FAM81B Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 49
  4. Proteomic characterization of the human sperm nucleus. (PMID: 21630459) de Mateo S. … Oliva R. (Proteomics 2011) 3
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3

Products for FAM81B Gene

Sources for FAM81B Gene

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