Aliases for FAM72A Gene
Aliases for FAM72A Gene
External Ids for FAM72A Gene
- HGNC: 24044
- Entrez Gene: 729533
- Ensembl: ENSG00000196550
- OMIM: 614710
- UniProtKB: Q5TYM5
Previous GeneCards Identifiers for FAM72A Gene
- GC01P120553
- GC01P7M0094
- GC01P204300
- GC01P206136
Summaries for FAM72A Gene
GeneCards Summary for FAM72A Gene
FAM72A (Family With Sequence Similarity 72 Member A) is a Protein Coding gene. An important paralog of this gene is FAM72D.
UniProtKB/Swiss-Prot for FAM72A Gene
-
May play a role in the regulation of cellular reactive oxygen species metabolism. May participate in cell growth regulation.
No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM72A Gene
Genomics for FAM72A Gene
Regulatory Elements for FAM72A Gene
Enhancers for FAM72A Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH01G206202 | 0.9 | ENCODE | 0.7 | +1.1 | 1091 | 2.4 | HDGF PKNOX1 ATF1 SIN3A ZBTB7B GLIS2 FOS SP3 NFYC TBX21 | FAM72A SRGAP2 |
| GH01G206242 | 0.9 | Ensembl ENCODE | 0.3 | -38.5 | -38482 | 1.2 | L3MBTL2 BHLHE40 NR2F1 JUNB GATAD2B DPF2 TBX21 ARID3A NR2C1 ZNF24 | PIR37211 FAM72A |
| GH01G206219 | 0.6 | Ensembl | 0.4 | -15.5 | -15482 | 1.6 | ZNF664 CBX3 RNF2 CEBPB CEBPG ATF2 | FAM72A PIR37211 |
| GH01G206239 | 0.7 | Ensembl ENCODE | 0.3 | -35.6 | -35582 | 1.8 | CTCF PKNOX1 ZNF600 | PIR37211 FAM72A |
| GH01G206245 | 0.6 | Ensembl | 0.3 | -41.4 | -41382 | 2.6 | SMARCA4 POLR2A BHLHE40 USF2 NFE2 ZNF662 | PIR37211 FAM72A |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around FAM72A on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for FAM72A Gene
- Chromosome:
- 1
- Start:
- 206,186,179 bp from pter
- End:
- 206,204,919 bp from pter
- Size:
- 18,741 bases
- Orientation:
- Minus strand
Genomic View for FAM72A Gene
Genes around FAM72A on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 1q32.1 by Ensembl
- 1q32.1 by Entrez Gene
- 1q32.1 by HGNC
FAM72A Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for FAM72A Gene
Proteins for FAM72A Gene
-
Protein details for FAM72A Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q5TYM5-FA72A_HUMAN
- Recommended name:
- Protein FAM72A
- Protein Accession:
- Q5TYM5
- B2RV15
- Q5TYM4
Protein attributes for FAM72A Gene
- Size:
- 149 amino acids
- Molecular mass:
- 16619 Da
- Quaternary structure:
-
- Interacts with UNG.
- Miscellaneous:
-
- Highly homologous to GCUD2 but localized to a distinct locus.
Protein Expression for FAM72A Gene
Post-translational modifications for FAM72A Gene
Other Protein References for FAM72A Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Search GeneTex for Antibodies for FAM72A
Protein Products
-
OriGene Purified Proteins for FAM72A
- Search Origene for MassSpec and Protein Over-expression Lysates for FAM72A
- Origene Custom Protein Services for FAM72A
- Search GeneTex for Proteins for FAM72A
Assay Products
No data available for DME Specific Peptides for FAM72A Gene
Domains & Families for FAM72A Gene
Suggested Antigen Peptide Sequences for FAM72A Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q5TYM5- Family:
-
- Belongs to the FAM72 family.
No data available for Gene Families for FAM72A Gene
Function for FAM72A Gene
Molecular function for FAM72A Gene
- UniProtKB/Swiss-Prot Function:
- May play a role in the regulation of cellular reactive oxygen species metabolism. May participate in cell growth regulation.
- UniProtKB/Swiss-Prot Induction:
- Up-regulated in peripheral blood mononuclear cells following Epstein-Barr virus (EBV) infection or following transfection with EBV LMP1 protein.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005515 | protein binding | IPI | 25416956 |
Phenotypes for FAM72A Gene
- GenomeRNAi human phenotypes for FAM72A:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
-
ViGene Biosciences lentiviral particle packaged cDNA for FAM72A gene
-
ViGene Biosciences ready-to-package AAV shRNAs for FAM72A gene
- Search ViGene Biosciences for FAM72A
CRISPR Products
-
OriGene CRISPR knockouts for FAM72A
-
Santa Cruz Biotechnology (SCBT) CRISPR for FAM72A
- GenScript: Design CRISPR guide RNA sequences for FAM72A
miRNA for FAM72A Gene
- miRTarBase miRNAs that target FAM72A
miRNA Products
- Search ViGene Biosciences for FAM72A
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for FAM72A
- Browse OriGene Inhibitory RNA Products For FAM72A
-
ViGene Biosciences ready-to-package AAV shRNAs for FAM72A gene
Clone Products
-
OriGene ORF clones in human for FAM72A
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for FAM72A
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
Cell Line Products
-
Horizon Cell Lines for FAM72A
-
ViGene Biosciences adenoviral particle packaged cDNA for FAM72A gene
-
ViGene Biosciences lentiviral particle packaged cDNA for FAM72A gene
-
ViGene Biosciences ready-to-package AAV shRNAs for FAM72A gene
Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM72A Gene
Localization for FAM72A Gene
Subcellular locations from UniProtKB/Swiss-Prot for FAM72A Gene
- Cytoplasm. Mitochondrion. Note=A V5 epitope-tagged construct has been shown to localize to the nucleus (PubMed:18676834). 5-7% of total FAM72A is associated with mitochondria around the nucleus in HEK293 cells (PubMed:21317926). {ECO:0000269 PubMed:18676834, ECO:0000269 PubMed:21317926}.
| Compartment | Confidence |
|---|---|
| mitochondrion | 5 |
| cytosol | 5 |
| extracellular | 2 |
| plasma membrane | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005737 | cytoplasm | IEA | -- |
| GO:0005739 | mitochondrion | IEA | -- |
| GO:0005829 | cytosol | IDA | -- |
| GO:0043231 | intracellular membrane-bounded organelle | IDA | -- |
Pathways & Interactions for FAM72A Gene
No Data Available
Interacting Proteins for FAM72A Gene
Selected Interacting proteins:
Q5TYM5-FA72A_HUMAN
ENSP00000356096
for FAM72A Gene via
IID
STRING
UniProtKB
| Symbol | External ID(s) | Details |
|---|---|---|
| MPPED2 |
No data available for Pathways by source and SIGNOR curated interactions for FAM72A Gene
Transcripts for FAM72A Gene
mRNA/cDNA for FAM72A Gene
- (7) REFSEQ mRNAs :
- (5) Additional mRNA sequences :
- (8) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for FAM72A Gene
CRISPR Products
-
OriGene CRISPR knockouts for FAM72A
-
Santa Cruz Biotechnology (SCBT) CRISPR for FAM72A
- GenScript: Design CRISPR guide RNA sequences for FAM72A
miRNA Products
- Search ViGene Biosciences for FAM72A
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for FAM72A
- Browse OriGene Inhibitory RNA Products For FAM72A
-
ViGene Biosciences ready-to-package AAV shRNAs for FAM72A gene
Clone Products
-
OriGene ORF clones in human for FAM72A
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for FAM72A
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
Flow Cytometry Products
| ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3a | · | 3b | · | 3c | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | · | 6c |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | - | - | - | ||||||||||||||||
| SP2: | |||||||||||||||||||||
| SP3: | - | ||||||||||||||||||||
| SP4: | - |
Expression for FAM72A Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Eye (Sensory Organs)
- Mature Horizontal Cells Inner Nuclear Layer
-
Neurons
- Mature Horizontal Cells Inner Nuclear Layer
-
Testis (Reproductive System)
This gene is overexpressed in Kidney (35.0) and Colon (34.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM72A Gene
NURSA nuclear receptor signaling pathways regulating expression of FAM72A Gene:
FAM72ASOURCE GeneReport for Unigene cluster for FAM72A Gene:
Hs.661924mRNA Expression by UniProt/SwissProt for FAM72A Gene:
Q5TYM5-FA72A_HUMAN
Tissue specificity:
May be up-regulated in malignant colon cancers, compared to normal colon and colon adenomas. Expression is also elevated in other common cancer types, including breast, lung, uterus, and ovary.
Evidence on tissue expression from TISSUES for FAM72A Gene
- Skin(4.1)
Primer Products
-
OriGene qPCR primer pairs for FAM72A
No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM72A Gene
Orthologs for FAM72A Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | FAM72A 34 |
|
||
| -- 35 |
|
OneToMany | |||
| cow (Bos Taurus) |
Mammalia | FAM72A 34 35 |
|
||
| dog (Canis familiaris) |
Mammalia | FAM72A 34 |
|
||
| -- 35 |
|
OneToMany | |||
| mouse (Mus musculus) |
Mammalia | Fam72a 34 16 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Fam72a 34 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | -- 35 |
|
OneToMany | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | -- 35 |
|
OneToMany | |
| chicken (Gallus gallus) |
Aves | FAM72A 34 |
|
||
| -- 35 |
|
OneToMany | |||
| lizard (Anolis carolinensis) |
Reptilia | -- 35 |
|
OneToMany | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | fam72a 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | zgc:101564 34 |
|
||
| FAM72B 35 |
|
OneToMany |
- Species where no ortholog for FAM72A was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for FAM72A Gene
(3) SIMAP similar genes for FAM72A Gene using alignment to 5 proteins:
Pseudogenes.org Pseudogenes for FAM72A Gene
Variants for FAM72A Gene
| SNP ID | Clin | Chr 01 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1077770 | -- | 206,189,142(+) | aatga(A/G)cgaaa | intron-variant | |
| rs111756773 | -- | 206,192,917(-) | AAAAA(A/G)AAAAG | intron-variant | |
| rs111793857 | -- | 206,188,443(-) | CTTTT(A/T)ACTAA | intron-variant | |
| rs112419596 | -- | 206,198,602(-) | AAATT(C/T)TCTCA | intron-variant | |
| rs112424008 | -- | 206,205,979(-) | GCTGG(A/G)GACGT | upstream-variant-2KB, reference, synonymous-codon, utr-variant-5-prime |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv26345 | CNV | gain+loss | 19812545 |
| nsv1115377 | CNV | duplication | 24896259 |
| nsv1148900 | CNV | duplication | 26484159 |
| nsv946611 | CNV | duplication | 23825009 |
Gene Damage Index Score:
0.01;
0.24% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for FAM72A Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- FAM72A
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM72A Gene
Disorders for FAM72A Gene
Relevant External Links for FAM72A
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- FAM72A
No disorders were found for FAM72A Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM72A Gene
Publications for FAM72A Gene
- Functional interaction of Ugene and EBV infection mediates tumorigenic effects. (PMID: 21317926) Wang L.T. … Hsu S.H. (Oncogene 2011) 2 3 4 64
- Ugene, a newly identified protein that is commonly overexpressed in cancer and binds uracil DNA glycosylase. (PMID: 18676834) Guo C. … Markowitz S.D. (Cancer Res. 2008) 2 3 4 64
- Lead discovery and in silico 3D structure modeling of tumorigenic FAM72A (p17). (PMID: 25234718) Pramanik S. … Heese K. (Tumour Biol. 2015) 2 3 64
- All-or-(N)One - an epistemological characterization of the human tumorigenic neuronal paralogous FAM72 gene loci. (PMID: 26206078) Kutzner A. … Heese K. (Genomics 2015) 2 3 64
- The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 64
Products for FAM72A Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
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- OriGene Purified Proteins for FAM72A
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- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for FAM72A
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- OriGene qPCR primer pairs for FAM72A
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- GenScript: Design CRISPR guide RNA sequences for FAM72A
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- Novus Biologicals
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- ViGene Biosciences adenoviral particle packaged cDNA for FAM72A gene
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- Search ViGene Biosciences for FAM72A
- Horizon Cell Lines for FAM72A
- Cyagen custom Knockout/knockin (KOKI) mouse models for FAM72A
- VectorBuilder custom plasmid, inducible vectors for FAM72A
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for FAM72A
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for FAM72A Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
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- (18) KEGG
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- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
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- (62) NCBI
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- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
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- (86) GenomeRNAi
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- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
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- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
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- (115) ProteomicsDB
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- (146) Cyagen
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- (148) SNPedia
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- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer