Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FAM71F2 Gene

Aliases for FAM71F2 Gene

  • Family With Sequence Similarity 71, Member F2 2 3
  • Family With Sequence Similarity 137, Member B 2 3
  • FAM137B 3 4
  • Protein FAM71F2 3
  • Protein FAM137B 4

External Ids for FAM71F2 Gene

Previous Symbols for FAM71F2 Gene

  • FAM137B

Summaries for FAM71F2 Gene

GeneCards Summary for FAM71F2 Gene

FAM71F2 (Family With Sequence Similarity 71, Member F2) is a Protein Coding gene. An important paralog of this gene is FAM71F1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM71F2 Gene

Genomics for FAM71F2 Gene

Genomic Location for FAM71F2 Gene

Start:
128,672,266 bp from pter
End:
128,686,875 bp from pter
Size:
14,610 bases
Orientation:
Plus strand

Genomic View for FAM71F2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM71F2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM71F2 Gene

Regulatory Elements for FAM71F2 Gene

Proteins for FAM71F2 Gene

  • Protein details for FAM71F2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6NXP2-F71F2_HUMAN
    Recommended name:
    Protein FAM71F2
    Protein Accession:
    Q6NXP2
    Secondary Accessions:
    • Q0VGF6
    • Q0VGF7
    • Q86X39

    Protein attributes for FAM71F2 Gene

    Size:
    309 amino acids
    Molecular mass:
    34516 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for FAM71F2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FAM71F2 Gene

Proteomics data for FAM71F2 Gene at MOPED

Post-translational modifications for FAM71F2 Gene

No Post-translational modifications

Other Protein References for FAM71F2 Gene

No data available for DME Specific Peptides for FAM71F2 Gene

Domains for FAM71F2 Gene

Protein Domains for FAM71F2 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM71F2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6NXP2

UniProtKB/Swiss-Prot:

F71F2_HUMAN
Family:
  • Belongs to the FAM71 family.:
    • Q6NXP2
genes like me logo Genes that share domains with FAM71F2: view

No data available for Gene Families for FAM71F2 Gene

Function for FAM71F2 Gene

miRNA for FAM71F2 Gene

miRTarBase miRNAs that target FAM71F2

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for FAM71F2 Gene

Localization for FAM71F2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM71F2 Gene COMPARTMENTS Subcellular localization image for FAM71F2 gene
Compartment Confidence
cytoskeleton 2
cytosol 1
nucleus 1
peroxisome 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM71F2 Gene

Pathways for FAM71F2 Gene

SuperPathways for FAM71F2 Gene

No Data Available

Interacting Proteins for FAM71F2 Gene

Gene Ontology (GO) - Biological Process for FAM71F2 Gene

None

No data available for Pathways by source for FAM71F2 Gene

Transcripts for FAM71F2 Gene

Unigene Clusters for FAM71F2 Gene

Family with sequence similarity 71, member F2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM71F2 Gene

No ASD Table

Relevant External Links for FAM71F2 Gene

GeneLoc Exon Structure for
FAM71F2
ECgene alternative splicing isoforms for
FAM71F2

Expression for FAM71F2 Gene

mRNA expression in normal human tissues for FAM71F2 Gene

mRNA differential expression in normal tissues according to GTEx for FAM71F2 Gene

This gene is overexpressed in Testis (11.0).

SOURCE GeneReport for Unigene cluster for FAM71F2 Gene Hs.445236

genes like me logo Genes that share expressions with FAM71F2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for FAM71F2 Gene

Orthologs for FAM71F2 Gene

This gene was present in the common ancestor of mammals.

Orthologs for FAM71F2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM71F2 35
  • 99.03 (n)
  • 98.38 (a)
FAM71F2 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM71F2 35
  • 81.71 (n)
  • 74.07 (a)
FAM71F2 36
  • 75 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM71F2 35
  • 86.51 (n)
  • 80.6 (a)
FAM71F2 36
  • 76 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam71f2 35
  • 82.32 (n)
  • 73.65 (a)
Fam71f2 16
Fam71f2 36
  • 73 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 55 (a)
OneToMany
-- 36
  • 47 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 31 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Fam71f2 35
  • 82.88 (n)
  • 75.17 (a)
Species with no ortholog for FAM71F2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM71F2 Gene

ENSEMBL:
Gene Tree for FAM71F2 (if available)
TreeFam:
Gene Tree for FAM71F2 (if available)

Paralogs for FAM71F2 Gene

Selected SIMAP similar genes for FAM71F2 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with FAM71F2: view

Variants for FAM71F2 Gene

Sequence variations from dbSNP and Humsavar for FAM71F2 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs1109552 - 128,682,980(+) CTGCC(A/G)TTGAA reference, missense
rs2060716 -- 128,673,572(-) TCCCA(C/T)TCCAT intron-variant
rs2076942 -- 128,681,882(+) CTGCA(A/C)CCCCC intron-variant
rs2290229 -- 128,679,928(-) GAGTT(A/T)CACAC intron-variant
rs2290230 -- 128,679,926(-) GTTTC(A/T)CACCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM71F2 Gene

Variant ID Type Subtype PubMed ID
esv2735137 CNV Deletion 23290073
esv2670312 CNV Deletion 23128226

Relevant External Links for FAM71F2 Gene

HapMap Linkage Disequilibrium report
FAM71F2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM71F2 Gene

Disorders for FAM71F2 Gene

(2) University of Copenhagen DISEASES for FAM71F2 Gene

genes like me logo Genes that share disorders with FAM71F2: view

No data available for UniProtKB/Swiss-Prot for FAM71F2 Gene

Publications for FAM71F2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 4
  3. Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns. (PMID: 17672918) Szafranski K. … Platzer M. (Genome Biol. 2007) 3
  4. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for FAM71F2 Gene

Sources for FAM71F2 Gene

Back to Top

Content