Aliases for FAM71F2 Gene
Aliases for FAM71F2 Gene
External Ids for FAM71F2 Gene
- HGNC: 27998
- Entrez Gene: 346653
- Ensembl: ENSG00000205085
- UniProtKB: Q6NXP2
Previous HGNC Symbols for FAM71F2 Gene
- FAM137B
Previous GeneCards Identifiers for FAM71F2 Gene
- GC07P128101
- GC07P128312
- GC07P122672
- GC07P128672
- GC07P128712
- GC07P128741
- GC07P128779
- GC07P128811
Summaries for FAM71F2 Gene
GeneCards Summary for FAM71F2 Gene
FAM71F2 (Family With Sequence Similarity 71 Member F2) is a Protein Coding gene. An important paralog of this gene is FAM71F1.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM71F2 Gene
Genomics for FAM71F2 Gene
Regulatory Elements for FAM71F2 Gene
Enhancers for FAM71F2 Gene
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around FAM71F2 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the FAM71F2 gene promoter:
Regulatory Element Products
Genomic Location for FAM71F2 Gene
- Chromosome:
- 7
- Start:
- 128,671,636 bp from pter
- End:
- 128,702,262 bp from pter
- Size:
- 30,627 bases
- Orientation:
- Plus strand
Genomic View for FAM71F2 Gene
Genes around FAM71F2 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 7q32.1 by Ensembl
- 7q32.1 by Entrez Gene
- 7q32.1 by HGNC
FAM71F2 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for FAM71F2 Gene
Proteins for FAM71F2 Gene
-
Protein details for FAM71F2 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q6NXP2-F71F2_HUMAN
- Recommended name:
- Protein FAM71F2
- Protein Accession:
- Q6NXP2
- Q0VGF6
- Q0VGF7
- Q86X39
Protein attributes for FAM71F2 Gene
- Size:
- 309 amino acids
- Molecular mass:
- 34516 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for FAM71F2 Gene
Other Protein References for FAM71F2 Gene
Antibody Products
- Novus Biologicals Antibodies for FAM71F2
- Invitrogen Antibodies for FAM71F2
- Search GeneTex for Antibodies for FAM71F2
Protein Products
-
OriGene Purified Proteins for FAM71F2
- Search Origene for MassSpec and Protein Over-expression Lysates for FAM71F2
- Origene Custom Protein Services for FAM71F2
- Novus Biologicals proteins for FAM71F2
- Search GeneTex for Proteins for FAM71F2
Assay Products
No data available for DME Specific Peptides for FAM71F2 Gene
Domains & Families for FAM71F2 Gene
Suggested Antigen Peptide Sequences for FAM71F2 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q6NXP2- Family:
-
- Belongs to the FAM71 family.
No data available for Gene Families for FAM71F2 Gene
Function for FAM71F2 Gene
Phenotypes for FAM71F2 Gene
- GenomeRNAi human phenotypes for FAM71F2:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
-
ViGene Biosciences lentiviral particle packaged cDNA for FAM71F2 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for FAM71F2 gene
- Search ViGene Biosciences for FAM71F2
CRISPR Products
-
OriGene CRISPR knockouts for FAM71F2
-
Santa Cruz Biotechnology (SCBT) CRISPR for FAM71F2
- GenScript: Design CRISPR guide RNA sequences for FAM71F2
miRNA for FAM71F2 Gene
- miRTarBase miRNAs that target FAM71F2
-
- hsa-mir-335-5p (MIRT017027)
- hsa-mir-3682-3p (MIRT498784)
- hsa-mir-1322 (MIRT498785)
- hsa-mir-1272 (MIRT498786)
- hsa-mir-5590-3p (MIRT498787)
- hsa-mir-142-5p (MIRT498788)
- hsa-mir-6507-3p (MIRT498789)
- hsa-mir-4314 (MIRT508474)
- hsa-mir-6506-5p (MIRT508475)
- hsa-mir-619-5p (MIRT508476)
- hsa-mir-3192-5p (MIRT508477)
- hsa-mir-4646-5p (MIRT508478)
- hsa-mir-204-3p (MIRT508479)
- hsa-mir-519e-5p (MIRT526444)
- hsa-mir-515-5p (MIRT526445)
- hsa-mir-5591-3p (MIRT526446)
- hsa-mir-5695 (MIRT526447)
- hsa-mir-519d-5p (MIRT526448)
- hsa-mir-3163 (MIRT526449)
- hsa-mir-4482-5p (MIRT526450)
- hsa-mir-3130-5p (MIRT526451)
- hsa-mir-1912 (MIRT526452)
- hsa-mir-1295b-5p (MIRT526453)
- hsa-mir-5692a (MIRT526454)
- hsa-mir-4282 (MIRT526455)
- hsa-mir-500a-5p (MIRT629308)
- hsa-mir-6732-3p (MIRT629309)
- hsa-mir-652-5p (MIRT629310)
- hsa-mir-6836-3p (MIRT633359)
- hsa-mir-5001-3p (MIRT633360)
- hsa-mir-2355-5p (MIRT633361)
- hsa-mir-6829-3p (MIRT633362)
- hsa-mir-6791-3p (MIRT633363)
- hsa-mir-6778-3p (MIRT633364)
- hsa-mir-4772-3p (MIRT633365)
- hsa-mir-7641 (MIRT643122)
- hsa-mir-122-5p (MIRT643123)
- hsa-mir-504-3p (MIRT643124)
- hsa-mir-4695-3p (MIRT643125)
- hsa-mir-4765 (MIRT643126)
- hsa-mir-4638-5p (MIRT643127)
- hsa-mir-1307-3p (MIRT643128)
- hsa-mir-1304-3p (MIRT643129)
- hsa-mir-6741-3p (MIRT643130)
- hsa-mir-6890-3p (MIRT643131)
- hsa-mir-8079 (MIRT643132)
- hsa-mir-1245a (MIRT643133)
- hsa-mir-129-5p (MIRT671328)
- hsa-mir-8055 (MIRT671329)
- hsa-mir-4309 (MIRT671330)
- hsa-mir-3198 (MIRT671331)
- hsa-mir-6879-3p (MIRT671332)
- hsa-mir-4294 (MIRT671333)
- hsa-mir-1289 (MIRT671334)
- hsa-mir-8082 (MIRT671335)
- hsa-mir-4534 (MIRT671336)
- hsa-mir-1273f (MIRT671337)
- hsa-mir-4708-5p (MIRT671338)
- hsa-mir-6088 (MIRT671339)
- hsa-mir-4770 (MIRT671340)
- hsa-mir-143-3p (MIRT671341)
- hsa-mir-215-3p (MIRT671342)
- hsa-mir-6773-3p (MIRT671343)
- hsa-mir-6514-5p (MIRT671344)
- hsa-mir-6513-5p (MIRT690400)
- hsa-mir-887-5p (MIRT690401)
- hsa-mir-3913-5p (MIRT690402)
- hsa-mir-3122 (MIRT690403)
- hsa-mir-450a-1-3p (MIRT690404)
- hsa-mir-6780a-5p (MIRT690405)
- hsa-mir-6779-5p (MIRT690406)
- hsa-mir-3689c (MIRT690407)
- hsa-mir-3689b-3p (MIRT690408)
- hsa-mir-3689a-3p (MIRT690409)
- hsa-mir-30b-3p (MIRT690410)
- hsa-mir-1273h-5p (MIRT690411)
- hsa-mir-6788-5p (MIRT690412)
- hsa-mir-30c-2-3p (MIRT690413)
- hsa-mir-30c-1-3p (MIRT690414)
- hsa-mir-1261 (MIRT690415)
- hsa-mir-6514-3p (MIRT690416)
- hsa-mir-7977 (MIRT690417)
- hsa-mir-376c-5p (MIRT690418)
- hsa-mir-376b-5p (MIRT690419)
- hsa-mir-3165 (MIRT690420)
- hsa-mir-6745 (MIRT690421)
- hsa-mir-363-5p (MIRT690422)
- hsa-mir-6799-5p (MIRT690423)
- hsa-mir-6883-5p (MIRT690424)
- hsa-mir-6785-5p (MIRT690425)
- hsa-mir-4728-5p (MIRT690426)
- hsa-mir-149-3p (MIRT690427)
- hsa-mir-7106-5p (MIRT690428)
- hsa-mir-6811-3p (MIRT690429)
- hsa-mir-214-5p (MIRT690430)
- hsa-mir-6804-5p (MIRT690431)
- hsa-mir-6089 (MIRT690432)
- hsa-mir-151b (MIRT690433)
- hsa-mir-151a-5p (MIRT690434)
- hsa-mir-383-3p (MIRT690435)
- hsa-mir-4779 (MIRT690436)
- hsa-mir-3156-3p (MIRT708734)
- hsa-mir-5682 (MIRT708735)
- hsa-mir-532-3p (MIRT708736)
- hsa-mir-4301 (MIRT708737)
- hsa-mir-1306-5p (MIRT708738)
- hsa-mir-6871-3p (MIRT708739)
- hsa-mir-29c-3p (MIRT708740)
- hsa-mir-29b-3p (MIRT708741)
- hsa-mir-29a-3p (MIRT708742)
- hsa-mir-6739-3p (MIRT716164)
- hsa-mir-6833-3p (MIRT716165)
- hsa-mir-4768-5p (MIRT716166)
- hsa-mir-4677-5p (MIRT716167)
- hsa-mir-7156-5p (MIRT716168)
- hsa-mir-4273 (MIRT716169)
- hsa-mir-6888-3p (MIRT716170)
- hsa-mir-6873-3p (MIRT716171)
- hsa-mir-2117 (MIRT716172)
- hsa-mir-431-5p (MIRT716173)
- hsa-mir-3120-5p (MIRT716174)
- hsa-mir-6845-3p (MIRT716175)
- hsa-mir-6827-3p (MIRT716176)
- hsa-mir-340-3p (MIRT716177)
- hsa-mir-323b-3p (MIRT716178)
miRNA Products
- Search ViGene Biosciences for FAM71F2
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for FAM71F2
- Browse OriGene Inhibitory RNA Products For FAM71F2
-
ViGene Biosciences ready-to-package AAV shRNAs for FAM71F2 gene
Cell Line Products
-
Horizon Cell Lines for FAM71F2
-
ViGene Biosciences adenoviral particle packaged cDNA for FAM71F2 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for FAM71F2 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for FAM71F2 gene
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM71F2 Gene
Localization for FAM71F2 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005634 | nucleus | IBA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot for FAM71F2 Gene
Transcripts for FAM71F2 Gene
mRNA/cDNA for FAM71F2 Gene
- (14) REFSEQ mRNAs :
- (5) Additional mRNA sequences :
- (16) Selected AceView cDNA sequences:
- (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for FAM71F2 Gene
CRISPR Products
-
OriGene CRISPR knockouts for FAM71F2
-
Santa Cruz Biotechnology (SCBT) CRISPR for FAM71F2
- GenScript: Design CRISPR guide RNA sequences for FAM71F2
miRNA Products
- Search ViGene Biosciences for FAM71F2
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for FAM71F2
- Browse OriGene Inhibitory RNA Products For FAM71F2
-
ViGene Biosciences ready-to-package AAV shRNAs for FAM71F2 gene
Flow Cytometry Products
Expression for FAM71F2 Gene
mRNA differential expression in normal tissues according to GTEx for FAM71F2 Gene
This gene is overexpressed in Testis (x11.0).
NURSA nuclear receptor signaling pathways regulating expression of FAM71F2 Gene:
FAM71F2SOURCE GeneReport for Unigene cluster for FAM71F2 Gene:
Hs.445236Evidence on tissue expression from TISSUES for FAM71F2 Gene
- Nervous system(4)
Primer Products
-
OriGene qPCR primer pairs for FAM71F2
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM71F2 Gene
Orthologs for FAM71F2 Gene
This gene was present in the common ancestor of mammals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | FAM71F2 34 35 |
|
||
| dog (Canis familiaris) |
Mammalia | FAM71F2 34 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Fam71f2 34 |
|
||
| mouse (Mus musculus) |
Mammalia | Fam71f2 34 16 35 |
|
||
| cow (Bos Taurus) |
Mammalia | FAM71F2 34 35 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | -- 35 |
|
OneToMany | |
| -- 35 |
|
OneToMany | |||
| platypus (Ornithorhynchus anatinus) |
Mammalia | -- 35 |
|
OneToMany |
- Species where no ortholog for FAM71F2 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for FAM71F2 Gene
Variants for FAM71F2 Gene
| SNP ID | Clin | Chr 07 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000064770 | -- | 128,700,886(+) | TGCTG(A/G)AAACA | intron-variant | |
| rs1000072266 | -- | 128,681,411(+) | TCTCG(-/TTTC)TTTCT | intron-variant | |
| rs1000241607 | -- | 128,694,053(+) | AATGG(C/T)AGGCC | intron-variant | |
| rs1000255953 | -- | 128,687,976(+) | CTCTA(C/T)GAGAC | intron-variant, downstream-variant-500B | |
| rs1000263853 | -- | 128,700,425(+) | ACAGG(C/T)ATGCA | intron-variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2670312 | CNV | deletion | 23128226 |
| esv2735137 | CNV | deletion | 23290073 |
Residual Variation Intolerance Score:
88.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
20.58;
99.13% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for FAM71F2 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- FAM71F2
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM71F2 Gene
Disorders for FAM71F2 Gene
Relevant External Links for FAM71F2
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- FAM71F2
No disorders were found for FAM71F2 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM71F2 Gene
Publications for FAM71F2 Gene
- Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 4 64
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
- Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns. (PMID: 17672918) Szafranski K. … Platzer M. (Genome Biol. 2007) 3 64
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
- The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 4 64
Products for FAM71F2 Gene
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- OriGene qPCR primer pairs for FAM71F2
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- Novus Biologicals Antibodies for FAM71F2
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- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- ViGene Biosciences adenoviral particle packaged cDNA for FAM71F2 gene
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- Horizon Cell Lines for FAM71F2
- Cyagen custom Knockout/knockin (KOKI) mouse models for FAM71F2
- VectorBuilder custom plasmid, inducible vectors for FAM71F2
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for FAM71F2
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for FAM71F2 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
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- (122) diseasecard
- (123) NIH Rare Diseases
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- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
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- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer




