FAM71F2 Gene
protein-coding GIFtS: 38
GCID: GC07P128312
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family with sequence similarity 71, member F2(Previous names: family with sequence similarity 137, member B )
(Previous symbol: FAM137B)
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Aliases
for FAM71F2 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Family With Sequence Similarity 71, Member F21 2 | | FAM137B1 2 3 | | Family With Sequence Similarity 137, Member B1 2 | | Protein FAM71F22 | | Protein FAM137B3 |
Export aliases for FAM71F2 gene to outside databasesPrevious GC identifers: GC07P128101 GC07P122672 |
Summaries
for FAM71F2 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for FAM71F2 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000007.13 NC_018918.1 NT_007933.15 NT_079596.2
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the FAM71F2 gene promoter:
AREB6 FAC1 POU2F1 GCNF GCNF-1 POU2F1a COUP HNF-4alpha2 GCNF-2 En-1
Other transcription factors
Search SABiosciences Chromatin IP Primers for FAM71F2
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FAM71F2 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 7q32.1 Ensembl cytogenetic band: 7q32.1 HGNC cytogenetic band: 7q32.1FAM71F2 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07P128312: view genomic region
(about GC identifiers)
Start:
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128,312,342 bp from pter |
End:
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128,326,929 bp from pter |
Size:
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14,588 bases |
Orientation:
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plus strand |
1 alternative location:
| Chr7+,CRA_TCAG 127,695,344-127,706,372 |
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Proteins
for FAM71F2 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: F71F2_HUMAN, Q6NXP2 (See
protein sequence)Recommended Name: Protein FAM71F2 Size: 309 amino acids; 34516 Da
Secondary accessions: Q0VGF6 Q0VGF7 Q86X39Alternative splicing: 2 isoforms: Q6NXP2-1 Q6NXP2-2 Explore the universe of human proteins at neXtProt for FAM71F2: NX_Q6NXP2
FAM71F2 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_001012457.3 NP_001122398.1
ENSEMBL proteins: ENSP00000418907 ENSP00000420140 ENSP00000401654 ENSP00000419649 ENSP00000367976
Human Recombinant Protein Products:
FAM71F2 Antibody Products:
Assay Products for FAM71F2: |
Protein
Domains /
Families
for FAM71F2 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
FAM71F2 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q6NXP2ProtoNet protein and cluster: Q6NXP2 UniProtKB/Swiss-Prot: F71F2_HUMAN, Q6NXP2Similarity: Belongs to the FAM71 family |
Function
for FAM71F2 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FAM71F2 (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FAM71F2 (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector (see all 2): FAM71F2 (NM_001012454) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FAM71F2 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FAM71F2 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM71F2 |
|
Pathways & Interactions
for FAM71F2 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FAM71F2
|
Drugs & Compounds
for FAM71F2 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for FAM71F2
Search CenterWatch for drugs/clinical trials and news about FAM71F2 / F71F2
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Transcripts
for FAM71F2 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for FAM71F2 gene (2 alternative transcripts): NM_001012454.3 NM_001128926.1 Unigene Cluster for FAM71F2: Family with sequence similarity 71, member F2 Hs.445236 [show with all ESTs]Unigene Representative Sequence: BC0473107 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000460349 ENST00000474069(uc003vnl.3) ENST00000480462(uc003vnk.4 uc010lln.2)
ENST00000434001 ENST00000477515 ENST00000461131 ENST00000378704(uc010llm.1)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FAM71F2 (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FAM71F2 (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 2): FAM71F2 (NM_001012454) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FAM71F2 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FAM71F2 |
Additional cDNA sequence: BC047310.1 BC066973.1 BC105729.1 BC105730.1 BC105731.1 3 DOTS entries: DT.100691758 DT.95263948 DT.402931 16 AceView cDNA sequences: BC066973 BI828639 BI828876 BV205241 AI203852 BQ010359 BC047310 BI831025 AI687340 AA757228 AI126168 BI461780 BF725233 BQ346951 AW592366 AA725655
GeneLoc Exon Structure
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Expression
for FAM71F2 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| FAM71F2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AGATTTGGGC
About this image
See FAM71F2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for FAM71F2
SOURCE GeneReport for Unigene cluster: Hs.445236
SABiosciences Custom PCR Arrays for FAM71F2
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FAM71F2
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat FAM71F2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FAM71F2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FAM71F2 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM71F2 |
Orthologs
for FAM71F2 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
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ENSEMBL Gene Tree for FAM71F2 (if available)
TreeFam Gene Tree for FAM71F2 (if available) |
Paralogs
for FAM71F2 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for FAM71F2 gene
- FAM71E22 FAM71E12 FAM71B2 FAM71D2 FAM71C2 FAM71A2 ENSG000002677062 FAM71F12
1 SIMAP similar gene for FAM71F2 using alignment to 2 protein entries: F71F2_HUMAN (see all proteins):FAM71F1
FAM71F2 for paralogs About GeneDecksing
|
Genomic Variants
for FAM71F2 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 7 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for FAM71F2 (128312342 - 128326929 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for FAM71F2: -- | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for FAM71F2 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
FAM71F2 for disorders About GeneDecksing
1  disease for FAM71F2: About MalaCardsseminoma
Export disorders for FAM71F2 gene to outside databases
|
Publications
for FAM71F2 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for FAM71F2 gene integrated from 9 sources:
(articles sorted by number of sources associating them with FAM71F2) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Human chromosome 7: DNA sequence and biology. (PubMed id 12690205)1, 2 Scherer S.W.... Tsui L.-C. (2003)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
- Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns. (PubMed id 17672918)1 Szafranski K....Platzer M. (2007)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- The DNA sequence of human chromosome 7. (PubMed id 12853948)2 Hillier L.W.... Wilson R.K. (2003)
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External Searches for FAM71F2 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
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Genome Databases showing FAM71F2 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing FAM71F2 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing FAM71F2 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for FAM71F2 | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for FAM71F2 gene:
Search GeneIP for patents involving FAM71F2
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for FAM71F2 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
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| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for FAM71F2 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for FAM71F2 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FAM71F2 | | | OriGene Protein Over-expression Lysate for FAM71F2 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for FAM71F2 | | OriGene 3'-UTR Clone for FAM71F2 | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FAM71F2 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FAM71F2 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for FAM71F2 | | OriGene Custom Protein Services for FAM71F2 | | | OriGene Custom Immunoassay Development | | |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat FAM71F2 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FAM71F2 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FAM71F2 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat FAM71F2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FAM71F2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FAM71F2 |
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 |  |  |  | |
| | | | Search Tocris compounds for FAM71F2 |
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 | | | FAM71F2 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM71F2 |
|  |  |  | | | | ThermoFisher Antibodies for FAM71F2 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FAM71F2 |
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