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Aliases for FAM71F1 Gene

Aliases for FAM71F1 Gene

  • Family With Sequence Similarity 71, Member F1 2 3
  • Family With Sequence Similarity 137, Member A 2 3
  • Testis Development Protein NYD-SP18 3 4
  • FAM137A 3 4
  • Testes Development-Related NYD-SP18 3
  • Protein FAM71F1 3
  • Protein FAM137A 4
  • NYD-SP18 3

External Ids for FAM71F1 Gene

Previous Symbols for FAM71F1 Gene

  • FAM137A

Summaries for FAM71F1 Gene

GeneCards Summary for FAM71F1 Gene

FAM71F1 (Family With Sequence Similarity 71, Member F1) is a Protein Coding gene. An important paralog of this gene is FAM71C.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM71F1 Gene

Genomics for FAM71F1 Gene

Genomic Location for FAM71F1 Gene

Start:
128,709,061 bp from pter
End:
128,731,743 bp from pter
Size:
22,683 bases
Orientation:
Plus strand

Genomic View for FAM71F1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM71F1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM71F1 Gene

Regulatory Elements for FAM71F1 Gene

Proteins for FAM71F1 Gene

  • Protein details for FAM71F1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96KD3-F71F1_HUMAN
    Recommended name:
    Protein FAM71F1
    Protein Accession:
    Q96KD3
    Secondary Accessions:
    • Q8IY75
    • Q8NA48

    Protein attributes for FAM71F1 Gene

    Size:
    344 amino acids
    Molecular mass:
    38946 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for FAM71F1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FAM71F1 Gene

Proteomics data for FAM71F1 Gene at MOPED

Post-translational modifications for FAM71F1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM71F1 Gene

No data available for DME Specific Peptides for FAM71F1 Gene

Domains for FAM71F1 Gene

Protein Domains for FAM71F1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM71F1 Gene

Graphical View of Domain Structure for InterPro Entry

Q96KD3

UniProtKB/Swiss-Prot:

F71F1_HUMAN
Family:
  • Belongs to the FAM71 family.:
    • Q96KD3
genes like me logo Genes that share domains with FAM71F1: view

No data available for Gene Families for FAM71F1 Gene

Function for FAM71F1 Gene

Phenotypes for FAM71F1 Gene

GenomeRNAi human phenotypes for FAM71F1:
genes like me logo Genes that share phenotypes with FAM71F1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM71F1 Gene

Localization for FAM71F1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM71F1 Gene COMPARTMENTS Subcellular localization image for FAM71F1 gene
Compartment Confidence
mitochondrion 2
nucleus 2
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM71F1 Gene

Pathways for FAM71F1 Gene

SuperPathways for FAM71F1 Gene

No Data Available

Interacting Proteins for FAM71F1 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000326652%0d%0a9606.ENSP00000254108%0d%0a9606.ENSP00000347184%0d%0a
Selected Interacting proteins: ENSP00000326652 for FAM71F1 Gene via STRING

Gene Ontology (GO) - Biological Process for FAM71F1 Gene

None

No data available for Pathways by source for FAM71F1 Gene

Transcripts for FAM71F1 Gene

Unigene Clusters for FAM71F1 Gene

Family with sequence similarity 71, member F1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM71F1 Gene

ExUns: 1a · 1b ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5a · 5b · 5c · 5d ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b
SP1: - - - - -
SP2: - - - - -
SP3: -
SP4: -
SP5: - - -
SP6: - - - -
SP7: - - - - - -
SP8: - - -
SP9: -

Relevant External Links for FAM71F1 Gene

GeneLoc Exon Structure for
FAM71F1
ECgene alternative splicing isoforms for
FAM71F1

Expression for FAM71F1 Gene

mRNA expression in normal human tissues for FAM71F1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FAM71F1 Gene

This gene is overexpressed in Testis (48.4).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for FAM71F1 Gene

SOURCE GeneReport for Unigene cluster for FAM71F1 Gene Hs.732440

genes like me logo Genes that share expressions with FAM71F1: view

No data available for mRNA Expression by UniProt/SwissProt for FAM71F1 Gene

Orthologs for FAM71F1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for FAM71F1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM71F1 35
  • 99.13 (n)
  • 97.97 (a)
FAM71F1 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM71F1 35
  • 88.08 (n)
  • 83.72 (a)
FAM71F1 36
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM71F1 35
  • 87.89 (n)
  • 83.43 (a)
FAM71F1 36
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam71f1 35
  • 82.99 (n)
  • 76.54 (a)
Fam71f1 16
Fam71f1 36
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 38 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Fam71f1 35
  • 82.85 (n)
  • 75.87 (a)
Species with no ortholog for FAM71F1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM71F1 Gene

ENSEMBL:
Gene Tree for FAM71F1 (if available)
TreeFam:
Gene Tree for FAM71F1 (if available)

Paralogs for FAM71F1 Gene

Selected SIMAP similar genes for FAM71F1 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with FAM71F1: view

Variants for FAM71F1 Gene

Sequence variations from dbSNP and Humsavar for FAM71F1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs101721 -- 128,731,361(-) GCCCG(C/G)CCATT utr-variant-3-prime, nc-transcript-variant
rs339064 -- 128,732,161(-) CAAAG(C/T)GTTGG downstream-variant-500B
rs339065 -- 128,731,244(-) TCACC(A/G)TGAGA utr-variant-3-prime, nc-transcript-variant
rs339066 -- 128,731,152(-) GTTGA(C/T)GAGGC utr-variant-3-prime, nc-transcript-variant
rs339067 -- 128,730,139(-) CAGGA(C/T)CTGAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM71F1 Gene

Variant ID Type Subtype PubMed ID
esv2735137 CNV Deletion 23290073
esv2670312 CNV Deletion 23128226
esv2673978 CNV Deletion 23128226

Relevant External Links for FAM71F1 Gene

HapMap Linkage Disequilibrium report
FAM71F1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM71F1 Gene

Disorders for FAM71F1 Gene

Relevant External Links for FAM71F1

Genetic Association Database (GAD)
FAM71F1
Human Genome Epidemiology (HuGE) Navigator
FAM71F1
genes like me logo Genes that share disorders with FAM71F1: view

No data available for UniProtKB/Swiss-Prot for FAM71F1 Gene

Publications for FAM71F1 Gene

  1. NYD-SP18 is associated with obesity in the NHLBI Family Heart Study. (PMID: 18317470) Wilk J.B. … Myers R.H. (Int J Obes (Lond) 2008) 3 48
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  5. Development and application of a DNA microarray-based yeast two-hybrid system. (PMID: 23275563) Suter B. … Wanker E.E. (Nucleic Acids Res. 2013) 3

Products for FAM71F1 Gene

Sources for FAM71F1 Gene

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