FAM71F1 Gene
protein-coding GIFtS: 41
GCID: GC07P128391
|
|
family with sequence similarity 71, member F1(Previous names: family with sequence similarity 137, member A )
(Previous symbol: FAM137A)
| |
Aliases
for FAM71F1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Family With Sequence Similarity 71, Member F11 2 | | Testis Development Protein NYD-SP182 3 | | FAM137A1 2 3 | | Protein FAM71F12 | | NYD-SP181 2 | | Testes Development-Related NYD-SP182 | | Family With Sequence Similarity 137, Member A1 2 | | Protein FAM137A3 |
Export aliases for FAM71F1 gene to outside databasesPrevious GC identifers: GC07P128143 GC07P128350 GC07P122716 GC07P128352 |
Summaries
for FAM71F1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for FAM71F1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000007.13 NC_018918.1 NT_007933.15 NT_079596.2
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the FAM71F1 gene promoter:
ER-alpha AML1a MEF-2 POU3F2 (N-Oct-5a) POU3F2 (N-Oct-5b) POU3F2 MEF-2A POU2F1 POU2F1a aMEF-2
Other transcription factors
Search SABiosciences Chromatin IP Primers for FAM71F1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FAM71F1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 7q32.1 Ensembl cytogenetic band: 7q32.1 HGNC cytogenetic band: 7q32.1FAM71F1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07P128391: view genomic region
(about GC identifiers)
Start:
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128,349,115 bp from pter |
End:
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128,371,797 bp from pter |
Size:
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22,683 bases |
Orientation:
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plus strand |
1 alternative location:
| Chr7+,CRA_TCAG 127,738,439-127,754,780 |
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Proteins
for FAM71F1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: F71F1_HUMAN, Q96KD3 (See
protein sequence)Recommended Name: Protein FAM71F1 Size: 344 amino acids; 38946 Da
Secondary accessions: Q8IY75Alternative splicing: 2 isoforms: Q96KD3-1 Q96KD3-2 Explore the universe of human proteins at neXtProt for FAM71F1: NX_Q96KD3
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q96KD3
FAM71F1 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_115988.1
ENSEMBL proteins: ENSP00000418192 ENSP00000418591 ENSP00000418672 ENSP00000326652 ENSP00000419796 ENSP00000417930
Human Recombinant Protein Products:
FAM71F1 Antibody Products:
Assay Products for FAM71F1: |
Protein
Domains /
Families
for FAM71F1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
FAM71F1 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q96KD3ProtoNet protein and cluster: Q96KD3 UniProtKB/Swiss-Prot: F71F1_HUMAN, Q96KD3Similarity: Belongs to the FAM71 family |
Function
for FAM71F1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FAM71F1 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FAM71F1
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: FAM71F1 (NM_032599) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FAM71F1 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FAM71F1 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM71F1 |
1 GenomeRNAi human phenotype for FAM71F1:
|
Pathways & Interactions
for FAM71F1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FAM71F1
|
Drugs & Compounds
for FAM71F1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for FAM71F1
Search CenterWatch for drugs/clinical trials and news about FAM71F1 / F71F1
|
Transcripts
for FAM71F1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for FAM71F1 gene: NM_032599.2 Unigene Cluster for FAM71F1: Family with sequence similarity 71, member F1 Hs.732440 [show with all ESTs]Unigene Representative Sequence: BC0409068 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000485070(uc003vnn.1) ENST00000484425(uc011koq.1 uc003vnm.1)
ENST00000493738(uc010llo.1) ENST00000469348 ENST00000471558(uc010llp.1)
ENST00000315184(uc003vno.1 uc003vnp.1) ENST00000483459 ENST00000466842
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FAM71F1 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FAM71F1
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: FAM71F1 (NM_032599) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FAM71F1 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FAM71F1 |
Additional cDNA sequence: AF367470.1 AK093161.1 AK302221.1 AK310308.1 AK310426.1 AK313608.1 BC037248.1 BC040906.1 6 DOTS entries: DT.100749630 DT.75151890 DT.208356 DT.97828411 DT.95360269 DT.121044245 24/36 AceView cDNA sequences (see all 36): BX118282 BE502243 AI799013 AA889558 AW663222 AI831456 BC040906 BI827539 AA872979 NM_032599 BM564150 BG723812 AL049052 BC037248 AK093161 AI015953 AA435609 BC032842 AA393064 BM563511 AI208578 AF367470 BX100346 AW072440
GeneLoc Exon Structure
5/9 Alternative Splicing Database (ASD) splice patterns (SP) for FAM71F1 (see all 9) About this scheme
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | · | 2c | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | · | 5c | · | 5d | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10a | · | 10b |
|---|
|
| SP1: | | | - | | - | | - | | - | | | | - | | | | | | | | | | | | | | | | | | | | | | |
| SP2: | | | | | - | | - | | - | | | | - | | | | | | | | | | | | - | | | | | | | | | | |
| SP3: | | | | | | | | | | | | | | | | | | | | | | | | | - | | | | | | | | | | |
| SP4: | | | | | | | | | | | | | | | | | | | | | | | | | - | | | | | | | | | | |
| SP5: | | | | | | | | | | | | | - | | - | | | | | | | | | | - | | | | | | | | | |
ECgene alternative splicing isoforms for FAM71F1
|
Expression
for FAM71F1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| FAM71F1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
See FAM71F1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for FAM71F1
SOURCE GeneReport for Unigene cluster: Hs.732440
SABiosciences Custom PCR Arrays for FAM71F1
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FAM71F1
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat FAM71F1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FAM71F1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FAM71F1 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM71F1 |
Orthologs
for FAM71F1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
--
ENSEMBL Gene Tree for FAM71F1 (if available)
TreeFam Gene Tree for FAM71F1 (if available) |
Paralogs
for FAM71F1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for FAM71F1 gene
- FAM71E12 FAM71D2 FAM71A2 ENSG000002677062 FAM71E22 FAM71B2 FAM71C2 FAM71F22
1 SIMAP similar gene for FAM71F1 using alignment to 6 protein entries: F71F1_HUMAN (see all proteins):FAM71F2
FAM71F1 for paralogs About GeneDecksing
|
Genomic Variants
for FAM71F1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 7 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for FAM71F1 (128349115 - 128371797 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for FAM71F1: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FAM71F1 |
|
Disorders
/ Diseases
for FAM71F1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
FAM71F1 for disorders About GeneDecksing
1  disease for FAM71F1: About MalaCardsobesity
Human Genome Epidemiology (HuGE) Navigator: FAM71F1 (1 document)
Export disorders for FAM71F1 gene to outside databases
|
Publications
for FAM71F1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for FAM71F1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with FAM71F1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
- NYD-SP18 is associated with obesity in the NHLBI Family Heart Study. (PubMed id 18317470)1 Wilk J.B....Myers R.H. (2008)
- hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
- Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)
|
External Searches for FAM71F1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing FAM71F1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing FAM71F1 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing FAM71F1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for FAM71F1 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for FAM71F1 gene:
Search GeneIP for patents involving FAM71F1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for FAM71F1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for FAM71F1 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for FAM71F1 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FAM71F1 | | | OriGene Protein Over-expression Lysate for FAM71F1 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for FAM71F1 | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FAM71F1 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FAM71F1 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | OriGene Purified Protein for FAM71F1 | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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| |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat FAM71F1 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FAM71F1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FAM71F1 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat FAM71F1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FAM71F1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FAM71F1 |
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| | | | Search Tocris compounds for FAM71F1 |
| |  |  |  |  | | | | |
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 | | | FAM71F1 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM71F1 |
|  |  |  | | | | ThermoFisher Antibodies for FAM71F1 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FAM71F1 |
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