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Aliases for FAM71D Gene

Aliases for FAM71D Gene

  • Family With Sequence Similarity 71, Member D 2 3
  • C14orf54 3 4
  • Chromosome 14 Open Reading Frame 54 2
  • Protein FAM71D 3

External Ids for FAM71D Gene

Previous HGNC Symbols for FAM71D Gene

  • C14orf54

Previous GeneCards Identifiers for FAM71D Gene

  • GC14P066726
  • GC14P067656
  • GC14P047825

Summaries for FAM71D Gene

GeneCards Summary for FAM71D Gene

FAM71D (Family With Sequence Similarity 71, Member D) is a Protein Coding gene. An important paralog of this gene is FAM71F1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM71D Gene

Genomics for FAM71D Gene

Regulatory Elements for FAM71D Gene

Genomic Location for FAM71D Gene

Start:
67,189,393 bp from pter
End:
67,228,776 bp from pter
Size:
39,384 bases
Orientation:
Plus strand

Genomic View for FAM71D Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM71D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM71D Gene

Proteins for FAM71D Gene

  • Protein details for FAM71D Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N9W8-FA71D_HUMAN
    Recommended name:
    Protein FAM71D
    Protein Accession:
    Q8N9W8
    Secondary Accessions:
    • Q86VN4

    Protein attributes for FAM71D Gene

    Size:
    422 amino acids
    Molecular mass:
    47076 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for FAM71D Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FAM71D Gene

Proteomics data for FAM71D Gene at MOPED

Post-translational modifications for FAM71D Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAM71D Gene

Domains for FAM71D Gene

Protein Domains for FAM71D Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM71D Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N9W8

UniProtKB/Swiss-Prot:

FA71D_HUMAN :
  • Q8N9W8
Family:
  • Belongs to the FAM71 family.
genes like me logo Genes that share domains with FAM71D: view

No data available for Gene Families for FAM71D Gene

Function for FAM71D Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM71D Gene

Localization for FAM71D Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM71D Gene COMPARTMENTS Subcellular localization image for FAM71D gene
Compartment Confidence
nucleus 4
cytosol 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for FAM71D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IDA --
genes like me logo Genes that share ontologies with FAM71D: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for FAM71D Gene

Pathways for FAM71D Gene

SuperPathways for FAM71D Gene

No Data Available

Interacting Proteins for FAM71D Gene

Gene Ontology (GO) - Biological Process for FAM71D Gene

None

No data available for Pathways by source for FAM71D Gene

Transcripts for FAM71D Gene

Unigene Clusters for FAM71D Gene

Family with sequence similarity 71, member D:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM71D

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM71D Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8
SP1:
SP2:

Relevant External Links for FAM71D Gene

GeneLoc Exon Structure for
FAM71D
ECgene alternative splicing isoforms for
FAM71D

Expression for FAM71D Gene

mRNA expression in normal human tissues for FAM71D Gene

mRNA differential expression in normal tissues according to GTEx for FAM71D Gene

This gene is overexpressed in Testis (36.6).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for FAM71D Gene

SOURCE GeneReport for Unigene cluster for FAM71D Gene Hs.412818

genes like me logo Genes that share expressions with FAM71D: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Expression partners for FAM71D Gene

Orthologs for FAM71D Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM71D Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia FAM71D 35
  • 81.54 (n)
  • 70.26 (a)
FAM71D 36
  • 70 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM71D 35
  • 82.41 (n)
  • 72.61 (a)
FAM71D 36
  • 73 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam71d 35
  • 74.77 (n)
  • 61.64 (a)
Fam71d 16
Fam71d 36
  • 54 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia FAM71D 35
  • 98.82 (n)
  • 97.39 (a)
FAM71D 36
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fam71d 35
  • 73.61 (n)
  • 62.8 (a)
platypus
(Ornithorhynchus anatinus)
Mammalia FAM71D 36
  • 54 (a)
OneToOne
chicken
(Gallus gallus)
Aves FAM71D 36
  • 32 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FAM71D 36
  • 48 (a)
OneToOne
Species with no ortholog for FAM71D:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM71D Gene

ENSEMBL:
Gene Tree for FAM71D (if available)
TreeFam:
Gene Tree for FAM71D (if available)

Paralogs for FAM71D Gene

Selected SIMAP similar genes for FAM71D Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with FAM71D: view

Variants for FAM71D Gene

Sequence variations from dbSNP and Humsavar for FAM71D Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs877956 -- 67,227,016(-) AATCA(C/T)TGTAA intron-variant
rs1881035 -- 67,225,981(+) TGCGC(A/G)TGCGC intron-variant
rs1918484 -- 67,218,014(-) ACACT(A/G)TTGCA intron-variant
rs2025207 -- 67,228,273(-) CTTTT(C/T)TTCTT intron-variant
rs2025208 -- 67,223,155(-) aggca(G/T)ggtgg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM71D Gene

Variant ID Type Subtype PubMed ID
dgv1953n71 CNV Loss 21882294
esv2751285 CNV Gain 17911159
nsv832821 CNV Gain 17160897

Relevant External Links for FAM71D Gene

HapMap Linkage Disequilibrium report
FAM71D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM71D Gene

Disorders for FAM71D Gene

No disorders were found for FAM71D Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for FAM71D Gene

Publications for FAM71D Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3
  5. Next-generation sequencing reveals novel rare fusion events with functional implication in prostate cancer. (PMID: 24488012) Teles Alves I. … Jenster G. (Oncogene 2015) 3

Products for FAM71D Gene

Sources for FAM71D Gene

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