Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FAM71A Gene

Aliases for FAM71A Gene

  • Family With Sequence Similarity 71 Member A 2 3 5
  • Testis Secretory Sperm-Binding Protein Li 209a 3
  • Family With Sequence Similarity 71, Member A 2
  • Golgi-Associated Rab2B Interactor-Like 4 3
  • Protein FAM71A 3
  • GARI-L4 3

External Ids for FAM71A Gene

Previous GeneCards Identifiers for FAM71A Gene

  • GC01P209187
  • GC01P210865
  • GC01P212798
  • GC01P183474

Summaries for FAM71A Gene

GeneCards Summary for FAM71A Gene

FAM71A (Family With Sequence Similarity 71 Member A) is a Protein Coding gene. An important paralog of this gene is FAM71B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM71A Gene

Genomics for FAM71A Gene

Regulatory Elements for FAM71A Gene

Enhancers for FAM71A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F212594 1.4 FANTOM5 Ensembl ENCODE 11.6 -28.0 -27991 3.3 PKNOX1 WRNIP1 FEZF1 ZNF2 CBX5 ZNF143 ZNF207 FOS SP3 JUNB ATF3 FAM71A ENSG00000235862 BATF3 TMEM206 PPP2R5A ANGEL2 GC01M212615
GH01F212479 0.6 Ensembl 11.5 -144.7 -144747 0.2 OSR2 HDAC1 SMARCA4 ETV1 ZBTB20 GABPA TMEM206 NENF FAM71A ENSG00000235862 ATF3 BATF3 ENSG00000212187 VASH2 LOC105372907 LOC105372908
GH01F212476 1.4 FANTOM5 Ensembl ENCODE 11.5 -146.7 -146675 1.7 PKNOX1 ATF1 WRNIP1 BRCA1 YY1 ELK1 GATA2 ZNF143 KLF13 ZNF263 LOC105372907 ATF3 NENF FLVCR1 ENSG00000235862 FAM71A BATF3 TMEM206 NEK2 ENSG00000212187
GH01F212469 1.4 FANTOM5 Ensembl ENCODE 11.5 -154.2 -154167 1.3 ZNF687 JUND RAD51 RNF2 BHLHE40 FOXP2 FOS NENF ENSG00000235862 FAM71A ATF3 TMEM206 BATF3 LOC105372907 ENSG00000212187 VASH2
GH01F212664 0.6 FANTOM5 ENCODE 11.1 +42.5 42497 4.2 HDGF ARID4B SIN3A DMAP1 ZNF2 ZNF143 ZNF548 FOS ZNF263 SP3 LOC105372907 ENSG00000225233 LOC105372904 FAM71A LOC102723727 SPATA45 PPP2R5A ATF3 BATF3 ANGEL2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FAM71A on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM71A Gene

Chromosome:
1
Start:
212,624,447 bp from pter
End:
212,626,778 bp from pter
Size:
2,332 bases
Orientation:
Plus strand

Genomic View for FAM71A Gene

Genes around FAM71A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM71A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM71A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM71A Gene

Proteins for FAM71A Gene

  • Protein details for FAM71A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IYT1-FA71A_HUMAN
    Recommended name:
    Protein FAM71A
    Protein Accession:
    Q8IYT1
    Secondary Accessions:
    • Q5VTZ1

    Protein attributes for FAM71A Gene

    Size:
    594 amino acids
    Molecular mass:
    63177 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM71A Gene

Post-translational modifications for FAM71A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM71A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM71A Gene

Domains & Families for FAM71A Gene

Protein Domains for FAM71A Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM71A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IYT1

UniProtKB/Swiss-Prot:

FA71A_HUMAN :
  • Belongs to the FAM71 family.
Family:
  • Belongs to the FAM71 family.
genes like me logo Genes that share domains with FAM71A: view

No data available for Gene Families for FAM71A Gene

Function for FAM71A Gene

genes like me logo Genes that share phenotypes with FAM71A: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM71A Gene

Localization for FAM71A Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM71A Gene COMPARTMENTS Subcellular localization image for FAM71A gene
Compartment Confidence
nucleus 5
cytosol 1

Gene Ontology (GO) - Cellular Components for FAM71A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
genes like me logo Genes that share ontologies with FAM71A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for FAM71A Gene

Pathways & Interactions for FAM71A Gene

SuperPathways for FAM71A Gene

No Data Available

Interacting Proteins for FAM71A Gene

Gene Ontology (GO) - Biological Process for FAM71A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM71A Gene

Transcripts for FAM71A Gene

mRNA/cDNA for FAM71A Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(17) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM71A Gene

Family with sequence similarity 71, member A:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM71A Gene

No ASD Table

Relevant External Links for FAM71A Gene

GeneLoc Exon Structure for
FAM71A
ECgene alternative splicing isoforms for
FAM71A

Expression for FAM71A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM71A Gene

mRNA differential expression in normal tissues according to GTEx for FAM71A Gene

This gene is overexpressed in Testis (x49.4).

Protein differential expression in normal tissues from HIPED for FAM71A Gene

This gene is overexpressed in Testis (56.7) and Ovary (8.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM71A Gene



Protein tissue co-expression partners for FAM71A Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of FAM71A Gene:

FAM71A

SOURCE GeneReport for Unigene cluster for FAM71A Gene:

Hs.129293
genes like me logo Genes that share expression patterns with FAM71A: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for FAM71A Gene

Orthologs for FAM71A Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM71A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM71A 34 35
  • 98.32 (n)
dog
(Canis familiaris)
Mammalia FAM71A 34 35
  • 77.56 (n)
cow
(Bos Taurus)
Mammalia FAM71A 34 35
  • 69.24 (n)
mouse
(Mus musculus)
Mammalia Fam71a 34 16 35
  • 68.82 (n)
rat
(Rattus norvegicus)
Mammalia Fam71a 34
  • 68.47 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 68 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 63 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 50 (a)
ManyToMany
-- 35
  • 44 (a)
ManyToMany
Species where no ortholog for FAM71A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM71A Gene

ENSEMBL:
Gene Tree for FAM71A (if available)
TreeFam:
Gene Tree for FAM71A (if available)

Paralogs for FAM71A Gene

(2) SIMAP similar genes for FAM71A Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for FAM71A Gene

genes like me logo Genes that share paralogs with FAM71A: view

Variants for FAM71A Gene

Sequence variations from dbSNP and Humsavar for FAM71A Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs767737768 Likely benign 212,626,342(+) GGGAC(C/T)CGCAT reference, missense
rs111491824 -- 212,625,306(+) AAGTT(C/T)GCCAC reference, synonymous-codon
rs111627662 -- 212,624,978(+) GTACA(A/C/T)GGGGG reference, missense
rs112892654 -- 212,626,351(+) ATAAA(A/G)GTGTC reference, missense
rs113135818 -- 212,626,626(+) ACACC(A/G)GACAT reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for FAM71A Gene

Variant ID Type Subtype PubMed ID
esv2758996 CNV loss 17122850
nsv549139 CNV gain 21841781

Variation tolerance for FAM71A Gene

Residual Variation Intolerance Score: 90.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.08; 90.18% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM71A Gene

Human Gene Mutation Database (HGMD)
FAM71A
SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM71A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM71A Gene

Disorders for FAM71A Gene

Relevant External Links for FAM71A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM71A

No disorders were found for FAM71A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM71A Gene

Publications for FAM71A Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  4. Small GTPase Rab2B and Its Specific Binding Protein Golgi-associated Rab2B Interactor-like 4 (GARI-L4) Regulate Golgi Morphology. (PMID: 26209634) Aizawa M. … Fukuda M. (J. Biol. Chem. 2015) 3 64
  5. Proteomic characterization of the human sperm nucleus. (PMID: 21630459) de Mateo S. … Oliva R. (Proteomics 2011) 3 64

Products for FAM71A Gene

Sources for FAM71A Gene

Content
Loading form....