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Aliases for FAM71A Gene

Aliases for FAM71A Gene

  • Family With Sequence Similarity 71, Member A 2 3

External Ids for FAM71A Gene

Previous GeneCards Identifiers for FAM71A Gene

  • GC01P209187
  • GC01P210865
  • GC01P212798
  • GC01P183474

Summaries for FAM71A Gene

GeneCards Summary for FAM71A Gene

FAM71A (Family With Sequence Similarity 71, Member A) is a Protein Coding gene. An important paralog of this gene is FAM71F1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM71A Gene

Genomics for FAM71A Gene

Regulatory Elements for FAM71A Gene

Genomic Location for FAM71A Gene

Chromosome:
1
Start:
212,624,447 bp from pter
End:
212,626,778 bp from pter
Size:
2,332 bases
Orientation:
Plus strand

Genomic View for FAM71A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM71A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM71A Gene

Proteins for FAM71A Gene

  • Protein details for FAM71A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IYT1-FA71A_HUMAN
    Recommended name:
    Protein FAM71A
    Protein Accession:
    Q8IYT1
    Secondary Accessions:
    • Q5VTZ1

    Protein attributes for FAM71A Gene

    Size:
    594 amino acids
    Molecular mass:
    63177 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM71A Gene

Proteomics data for FAM71A Gene at MOPED

Post-translational modifications for FAM71A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM71A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM71A Gene

Domains & Families for FAM71A Gene

Protein Domains for FAM71A Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM71A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IYT1

UniProtKB/Swiss-Prot:

FA71A_HUMAN :
  • Belongs to the FAM71 family.
Family:
  • Belongs to the FAM71 family.
genes like me logo Genes that share domains with FAM71A: view

No data available for Gene Families for FAM71A Gene

Function for FAM71A Gene

genes like me logo Genes that share phenotypes with FAM71A: view

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM71A

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM71A Gene

Localization for FAM71A Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM71A Gene COMPARTMENTS Subcellular localization image for FAM71A gene
Compartment Confidence
nucleus 5

Gene Ontology (GO) - Cellular Components for FAM71A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
genes like me logo Genes that share ontologies with FAM71A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for FAM71A Gene

Pathways & Interactions for FAM71A Gene

SuperPathways for FAM71A Gene

No Data Available

Interacting Proteins for FAM71A Gene

Gene Ontology (GO) - Biological Process for FAM71A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM71A Gene

Drugs & Compounds for FAM71A Gene

No Compound Related Data Available

Transcripts for FAM71A Gene

mRNA/cDNA for FAM71A Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(17) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM71A Gene

Family with sequence similarity 71, member A:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM71A

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM71A Gene

No ASD Table

Relevant External Links for FAM71A Gene

GeneLoc Exon Structure for
FAM71A
ECgene alternative splicing isoforms for
FAM71A

Expression for FAM71A Gene

mRNA expression in normal human tissues for FAM71A Gene

mRNA differential expression in normal tissues according to GTEx for FAM71A Gene

This gene is overexpressed in Testis (x49.4).

Protein differential expression in normal tissues from HIPED for FAM71A Gene

This gene is overexpressed in Testis (56.7) and Ovary (8.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM71A Gene



SOURCE GeneReport for Unigene cluster for FAM71A Gene Hs.129293

genes like me logo Genes that share expression patterns with FAM71A: view

Protein tissue co-expression partners for FAM71A Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for FAM71A Gene

Orthologs for FAM71A Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM71A Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia FAM71A 35
  • 69.24 (n)
  • 58.08 (a)
FAM71A 36
  • 58 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM71A 35
  • 77.56 (n)
  • 77.43 (a)
FAM71A 36
  • 62 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam71a 35
  • 68.82 (n)
  • 54.68 (a)
Fam71a 16
Fam71a 36
  • 51 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia FAM71A 35
  • 98.32 (n)
  • 96.13 (a)
FAM71A 36
  • 96 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fam71a 35
  • 68.47 (n)
  • 54.95 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 63 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 68 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 50 (a)
ManyToMany
-- 36
  • 44 (a)
ManyToMany
Species with no ortholog for FAM71A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM71A Gene

ENSEMBL:
Gene Tree for FAM71A (if available)
TreeFam:
Gene Tree for FAM71A (if available)

Paralogs for FAM71A Gene

(2) SIMAP similar genes for FAM71A Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for FAM71A Gene

genes like me logo Genes that share paralogs with FAM71A: view

Variants for FAM71A Gene

Sequence variations from dbSNP and Humsavar for FAM71A Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs3122712 - 212,625,635(+) CACTA(A/G)TGTGC reference, missense
rs3122713 - 212,626,528(+) ATGTG(A/G)ACGTC reference, missense
rs759025933 -- 212,625,349(+) CTCTT(C/G)ACACA missense, reference
rs758552014 -- 212,625,276(+) CAAGA(C/T)CATGA reference, synonymous-codon
rs758504092 -- 212,626,222(+) ACAAA(A/G)CAAGG reference, missense

Structural Variations from Database of Genomic Variants (DGV) for FAM71A Gene

Variant ID Type Subtype PubMed ID
dgv178e1 CNV Complex 17122850

Variation tolerance for FAM71A Gene

Residual Variation Intolerance Score: 90.79% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.08; 90.18% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM71A Gene

HapMap Linkage Disequilibrium report
FAM71A
Human Gene Mutation Database (HGMD)
FAM71A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM71A Gene

Disorders for FAM71A Gene

Relevant External Links for FAM71A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM71A
genes like me logo Genes that share disorders with FAM71A: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM71A Gene

Publications for FAM71A Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 67
  2. Proteomic characterization of the human sperm nucleus. (PMID: 21630459) de Mateo S. … Oliva R. (Proteomics 2011) 67
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 67
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 67
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 67

Products for FAM71A Gene

Sources for FAM71A Gene

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