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Aliases for FAM69C Gene

Aliases for FAM69C Gene

  • Family With Sequence Similarity 69 Member C 2 3 5
  • C18orf51 3 4
  • Family With Sequence Similarity 69, Member C 2
  • Chromosome 18 Open Reading Frame 51 2
  • Protein FAM69C 3

External Ids for FAM69C Gene

Previous HGNC Symbols for FAM69C Gene

  • C18orf51

Previous GeneCards Identifiers for FAM69C Gene

  • GC18M070254
  • GC18M072102
  • GC18M068835

Summaries for FAM69C Gene

Entrez Gene Summary for FAM69C Gene

  • This gene encodes a member of the FAM69 family of cysteine-rich type II transmembrane proteins. These proteins localize to the endoplasmic reticulum but their specific functions are unknown. [provided by RefSeq, Nov 2011]

GeneCards Summary for FAM69C Gene

FAM69C (Family With Sequence Similarity 69 Member C) is a Protein Coding gene. GO annotations related to this gene include transferase activity, transferring phosphorus-containing groups.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM69C Gene

Genomics for FAM69C Gene

Regulatory Elements for FAM69C Gene

Enhancers for FAM69C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18F074468 1 FANTOM5 ENCODE 11.9 -4.1 -4106 1.0 FAM69C CNDP1 FBXO15 CNDP2
GH18F074459 0.2 ENCODE 8.6 +4.3 4323 1.4 CTCF ZNF366 ZNF24 CNDP2 FAM69C GC18M074426
GH18F074078 0.5 FANTOM5 3.6 +385.8 385828 0.3 TIMM21 LINC00909 FAM69C CNDP1 FBXO15 ENSG00000263655
GH18F074540 1 FANTOM5 ENCODE 1.4 -77.7 -77723 4.0 MLX ARID4B DMAP1 ZNF48 YY1 SLC30A9 ZNF143 FOS SP5 MXD4 CNDP1 FAM69C ENSG00000264340
GH18F074463 0.2 ENCODE 0.8 +1.3 1298 0.8 RNF2 CNDP2 FAM69C GC18M074426
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FAM69C on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM69C Gene

74,434,099 bp from pter
74,464,715 bp from pter
30,617 bases
Minus strand

Genomic View for FAM69C Gene

Genes around FAM69C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM69C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM69C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM69C Gene

Proteins for FAM69C Gene

  • Protein details for FAM69C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Protein FAM69C
    Protein Accession:

    Protein attributes for FAM69C Gene

    419 amino acids
    Molecular mass:
    46420 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for FAM69C Gene


neXtProt entry for FAM69C Gene

Post-translational modifications for FAM69C Gene

  • Among the many cysteines in the lumenal domain, most are probably involved in disulfide bonds.

Other Protein References for FAM69C Gene

No data available for DME Specific Peptides for FAM69C Gene

Domains & Families for FAM69C Gene

Protein Domains for FAM69C Gene

Suggested Antigen Peptide Sequences for FAM69C Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the FAM69 family.
  • Belongs to the FAM69 family.
genes like me logo Genes that share domains with FAM69C: view

No data available for Gene Families for FAM69C Gene

Function for FAM69C Gene

Phenotypes for FAM69C Gene

GenomeRNAi human phenotypes for FAM69C:
genes like me logo Genes that share phenotypes with FAM69C: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM69C Gene

Localization for FAM69C Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM69C Gene

Endoplasmic reticulum membrane; Single-pass type II membrane protein.

Subcellular locations from

Jensen Localization Image for FAM69C Gene COMPARTMENTS Subcellular localization image for FAM69C gene
Compartment Confidence
endoplasmic reticulum 3
extracellular 2
mitochondrion 2
golgi apparatus 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for FAM69C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005789 endoplasmic reticulum membrane IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with FAM69C: view

Pathways & Interactions for FAM69C Gene

SuperPathways for FAM69C Gene

No Data Available

Interacting Proteins for FAM69C Gene

Gene Ontology (GO) - Biological Process for FAM69C Gene


No data available for Pathways by source and SIGNOR curated interactions for FAM69C Gene

Transcripts for FAM69C Gene

mRNA/cDNA for FAM69C Gene

Unigene Clusters for FAM69C Gene

Family with sequence similarity 69, member C:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM69C Gene

No ASD Table

Relevant External Links for FAM69C Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for FAM69C Gene

mRNA expression in normal human tissues for FAM69C Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FAM69C Gene

This gene is overexpressed in Brain - Putamen (basal ganglia) (x6.8), Brain - Caudate (basal ganglia) (x5.7), Brain - Amygdala (x5.4), Brain - Substantia nigra (x4.2), Brain - Hippocampus (x4.1), and Brain - Nucleus accumbens (basal ganglia) (x4.0).

Protein differential expression in normal tissues from HIPED for FAM69C Gene

This gene is overexpressed in Placenta (55.5) and Vitreous humor (13.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM69C Gene

Protein tissue co-expression partners for FAM69C Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of FAM69C Gene:


SOURCE GeneReport for Unigene cluster for FAM69C Gene:

genes like me logo Genes that share expression patterns with FAM69C: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for FAM69C Gene

Orthologs for FAM69C Gene

This gene was present in the common ancestor of animals.

Orthologs for FAM69C Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia FAM69C 34 35
  • 99.05 (n)
(Rattus norvegicus)
Mammalia Fam69c 34
  • 81.66 (n)
(Bos Taurus)
Mammalia FAM69C 34 35
  • 80.22 (n)
(Mus musculus)
Mammalia Fam69c 34 16 35
  • 79.67 (n)
(Canis familiaris)
Mammalia FAM69C 34 35
  • 76.08 (n)
(Monodelphis domestica)
Mammalia FAM69C 35
  • 70 (a)
(Ornithorhynchus anatinus)
Mammalia FAM69C 35
  • 70 (a)
(Gallus gallus)
Aves FAM69C 34 35
  • 69.47 (n)
(Anolis carolinensis)
Reptilia FAM69C 35
  • 60 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia fam69c 34
  • 60.19 (n)
Str.12002 34
(Danio rerio)
Actinopterygii fam69c 34 35
  • 60.22 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG12038 35
  • 21 (a)
(Caenorhabditis elegans)
Secernentea C53D5.1 35
  • 20 (a)
Species where no ortholog for FAM69C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for FAM69C Gene

Gene Tree for FAM69C (if available)
Gene Tree for FAM69C (if available)

Paralogs for FAM69C Gene

No data available for Paralogs for FAM69C Gene

Variants for FAM69C Gene

Sequence variations from dbSNP and Humsavar for FAM69C Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs1013727 -- 74,442,193(-) GTGAA(C/T)AGAAG intron-variant
rs10163580 -- 74,432,961(+) cagca(A/G)acact utr-variant-3-prime
rs1046406 -- 74,435,962(-) TGAAT(A/G)TGTAT nc-transcript-variant, utr-variant-3-prime
rs1046407 -- 74,435,762(-) TCTTT(C/T)GGAAT nc-transcript-variant, utr-variant-3-prime
rs10514132 -- 74,448,312(+) AGGCC(A/G)CTCTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM69C Gene

Variant ID Type Subtype PubMed ID
dgv3401n100 CNV gain 25217958
esv1000434 CNV deletion 20482838
esv3643115 CNV loss 21293372
esv3643117 CNV loss 21293372
esv3643118 CNV gain 21293372
nsv1057441 CNV gain 25217958
nsv1064324 CNV gain 25217958
nsv1067091 CNV loss 25217958
nsv458298 CNV gain 19166990
nsv527671 CNV gain 19592680
nsv577652 CNV gain 21841781
nsv577653 CNV gain 21841781
nsv577654 CNV gain 21841781

Variation tolerance for FAM69C Gene

Gene Damage Index Score: 4.64; 65.66% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM69C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM69C Gene

Disorders for FAM69C Gene

Relevant External Links for FAM69C

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for FAM69C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM69C Gene

Publications for FAM69C Gene

  1. A novel predicted calcium-regulated kinase family implicated in neurological disorders. (PMID: 23840464) Dudkiewicz M. … PawA8owski K. (PLoS ONE 2013) 2 3 64
  2. Characterisation of the FAM69 family of cysteine-rich endoplasmic reticulum proteins. (PMID: 21334309) Tennant-Eyles A.J. … Roberts R.G. (Biochem. Biophys. Res. Commun. 2011) 2 3 64
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  4. DNA sequence and analysis of human chromosome 18. (PMID: 16177791) Nusbaum C. … Lander E.S. (Nature 2005) 4 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for FAM69C Gene

Sources for FAM69C Gene

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