Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FAM66D Gene

Subcategory (RNA class) for FAM66D Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM66D Gene

  • Family With Sequence Similarity 66 Member D 2 3 5
  • Family With Sequence Similarity 66, Member D 2

External Ids for FAM66D Gene

Previous GeneCards Identifiers for FAM66D Gene

  • GC08U900597
  • GC08P012017
  • GC08P011974

Summaries for FAM66D Gene

GeneCards Summary for FAM66D Gene

FAM66D (Family With Sequence Similarity 66 Member D) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM66D Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM66D Gene

Genomics for FAM66D Gene

Regulatory Elements for FAM66D Gene

Enhancers for FAM66D Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H011472 1.4 Ensembl ENCODE dbSUPER 21.4 -640.4 -640350 5.1 FOXA2 PKNOX1 SIN3A FEZF1 ZNF2 YY1 ZNF121 ELK1 ZNF366 SCRT2 FAM66A FAM66D FAM167A PRSS52P LOC105379241 LINC00208 ENSG00000249316 LINC00529 DEFB135 ZNF705D
GH08H011506 1.9 FANTOM5 Ensembl ENCODE dbSUPER 9.9 -603.7 -603654 12 PKNOX1 ZNF493 ZFP64 FOS RUNX3 ZNF202 SP3 ZC3H11A JUNB REST PINX1 LOC101929290 FAM167A LOC105379241 FAM90A2P MTMR9 FAM66A ENSG00000255518 ENSG00000255354 FAM66D
GH08H011563 1.5 Ensembl ENCODE dbSUPER 5.5 -551.5 -551491 1.8 HDGF ATF1 MLX ARID4B SIN3A DMAP1 ZNF2 GLIS2 ZNF143 KLF7 LOC105379241 ENSG00000255518 FAM167A DEFB134 LOC100421446 FAM66D ENSG00000255354 LINC00208
GH08H011886 1.5 FANTOM5 Ensembl ENCODE dbSUPER 4.7 -227.4 -227400 2.8 BCOR HLF CEBPB ZNF121 ZFHX2 ZBTB33 EGR2 SPI1 CTSB DEFB136 DEFB135 FDFT1 DEFB131E FAM66D PIR55200 ENSG00000255144
GH08H011557 1.2 Ensembl ENCODE dbSUPER 5.4 -557.2 -557200 2.4 ZNF687 ZSCAN4 MAX MNT EBF1 SP1 ZFHX2 POLR2A EED IKZF1 LOC105379241 FAM66D ENSG00000255310 ENSG00000255518 ENSG00000255354
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM66D on UCSC Golden Path with GeneCards custom track

Promoters for FAM66D Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000221153 318 1000 CTCF NRF1 ZFX

Genomic Locations for FAM66D Gene

Genomic Locations for FAM66D Gene
chr8:12,115,782-12,177,550
(GRCh38/hg38)
Size:
61,769 bases
Orientation:
Plus strand
chr8:11,973,291-12,008,698
(GRCh37/hg19)

Genomic View for FAM66D Gene

Genes around FAM66D on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM66D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM66D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM66D Gene

Proteins for FAM66D Gene

Post-translational modifications for FAM66D Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM66D Gene

Domains & Families for FAM66D Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM66D Gene

Function for FAM66D Gene

Phenotypes From GWAS Catalog for FAM66D Gene

Phenotypes for FAM66D Gene

GenomeRNAi human phenotypes for FAM66D:
genes like me logo Genes that share phenotypes with FAM66D: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM66D Gene

Localization for FAM66D Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM66D Gene

Pathways & Interactions for FAM66D Gene

SuperPathways for FAM66D Gene

No Data Available

Interacting Proteins for FAM66D Gene

Gene Ontology (GO) - Biological Process for FAM66D Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM66D Gene

Drugs & Compounds for FAM66D Gene

No Compound Related Data Available

Transcripts for FAM66D Gene

mRNA/cDNA for FAM66D Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM66D Gene

Family with sequence similarity 66, member D:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM66D Gene

No ASD Table

Relevant External Links for FAM66D Gene

GeneLoc Exon Structure for
FAM66D
ECgene alternative splicing isoforms for
FAM66D

Expression for FAM66D Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM66D Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM66D Gene:

FAM66D

SOURCE GeneReport for Unigene cluster for FAM66D Gene:

Hs.546711
genes like me logo Genes that share expression patterns with FAM66D: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM66D Gene

Orthologs for FAM66D Gene

Evolution for FAM66D Gene

ENSEMBL:
Gene Tree for FAM66D (if available)
TreeFam:
Gene Tree for FAM66D (if available)

No data available for Orthologs for FAM66D Gene

Paralogs for FAM66D Gene

No data available for Paralogs for FAM66D Gene

Variants for FAM66D Gene

Sequence variations from dbSNP and Humsavar for FAM66D Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000196047 -- 12,117,349(+) GTCTA(C/G)CTGAG intron-variant
rs1000282721 -- 7,354,771(+) TGGCG(C/G)CAATT intron-variant, nc-transcript-variant
rs1000485645 -- 12,144,877(+) GCAGG(C/T)ATGTG intron-variant
rs1000516337 -- 12,145,675(+) TGTTG(A/G)CAAGT nc-transcript-variant
rs1000799710 -- 12,125,674(+) GGCTA(A/T)TTTAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM66D Gene

Variant ID Type Subtype PubMed ID
dgv11964n54 CNV loss 21841781
dgv11963n54 CNV loss 21841781
dgv11962n54 CNV loss 21841781
dgv11961n54 CNV loss 21841781
dgv11960n54 CNV gain 21841781
dgv11959n54 CNV loss 21841781
nsv981912 CNV duplication 23825009
nsv967564 CNV duplication 23825009
nsv951104 CNV deletion 24416366
nsv8288 CNV gain+loss 18304495
nsv610319 CNV loss 21841781
nsv610317 CNV loss 21841781
nsv610313 CNV loss 21841781
nsv610309 CNV loss 21841781
nsv610297 CNV gain 21841781
nsv516685 CNV gain+loss 19592680
nsv515060 CNV gain 21397061
nsv471462 CNV gain 19718026
nsv442420 CNV gain+loss 18776908
nsv428195 CNV gain 18775914
nsv1161718 OTHER complex 26073780
nsv1139930 CNV duplication 24896259
nsv1122187 CNV deletion 24896259
nsv1110510 CNV duplication 24896259
nsv1077517 CNV duplication 25765185
nsv1034132 CNV gain 25217958
esv3616267 CNV loss 21293372
esv3584578 CNV gain 24956385
esv3447577 CNV duplication 20981092
esv3440369 CNV duplication 20981092
esv3344144 CNV duplication 20981092
esv3343116 CNV duplication 20981092
esv2759593 CNV gain+loss 17122850
esv2736614 CNV deletion 23290073
esv2660145 CNV deletion 23128226
esv2550155 CNV deletion 19546169
esv22986 CNV gain+loss 19812545
esv1009029 CNV gain 20482838
dgv7026n100 CNV gain+loss 25217958
dgv7025n100 CNV gain 25217958
dgv7021n100 CNV loss 25217958
dgv7020n100 CNV loss 25217958
dgv7019n100 CNV gain 25217958
dgv7018n100 CNV gain+loss 25217958
dgv7017n100 CNV gain 25217958
dgv7016n100 CNV gain 25217958
dgv7015n100 CNV gain 25217958
dgv27n31 CNV gain 19718026
dgv244e55 CNV gain 17911159
dgv154e203 CNV gain+loss 21179565
dgv1375e214 CNV gain 21293372
dgv1270e199 CNV deletion 23128226
dgv11966n54 CNV loss 21841781
dgv11965n54 CNV loss 21841781

Relevant External Links for FAM66D Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM66D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM66D Gene

Disorders for FAM66D Gene

Relevant External Links for FAM66D

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM66D

No disorders were found for FAM66D Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM66D Gene

Publications for FAM66D Gene

No publications were found for FAM66D Gene.

Products for FAM66D Gene

Sources for FAM66D Gene

Content
Loading form....