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Aliases for FAM66C Gene

Subcategory (RNA class) for FAM66C Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM66C Gene

  • Family With Sequence Similarity 66 Member C 2 3 5
  • Family With Sequence Similarity 66, Member C 2

External Ids for FAM66C Gene

Previous GeneCards Identifiers for FAM66C Gene

  • GC12P008225
  • GC12P008333

Summaries for FAM66C Gene

GeneCards Summary for FAM66C Gene

FAM66C (Family With Sequence Similarity 66 Member C) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM66C Gene

Genomics for FAM66C Gene

Regulatory Elements for FAM66C Gene

Enhancers for FAM66C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F007796 1.1 Ensembl ENCODE 15.2 -381.4 -381372 4.6 BCOR ZNF792 ZNF781 RARA ZNF316 JUND ZBTB33 NFE2 EMSY ZBTB20 FAM66C GNB3 NECAP1 ENO2 DPPA3 ENSG00000244050 RPL13P5 DSTNP2 SLC2A3 NANOG
GH12F008197 0.7 Ensembl ENCODE 13.1 +17.8 17843 1.5 ZFHX2 ATF3 FEZF1 ZIC2 WT1 FAM66C ENSG00000276417
GH12F008179 0.2 ENCODE 11.7 0.0 -39 1.1 HDGF ZNF76 KLF17 SIN3A GLI4 RAD21 ZNF2 GLIS2 KLF7 ZNF391 CLEC4A FAM66C GCSHP4
GH12F008156 1 Ensembl ENCODE 0.3 -23.0 -23005 2.0 PKNOX1 JUN ZNF175 ZNF316 NFE2 MAFK NFE2L2 ZNF639 RNF2 MAFG CLEC4A NECAP1 GCSHP4 FAM66C
GH12F008154 0.7 FANTOM5 Ensembl 0.3 -25.1 -25109 1.0 CLEC4A CLEC4E C3AR1 CLEC6A NECAP1 CLEC4D GCSHP4 FAM66C
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FAM66C on UCSC Golden Path with GeneCards custom track

Promoters for FAM66C Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000426005 492 1799 HDGF ZNF76 KLF17 GLI4 RAD21 ZNF2 GLIS2 KLF7 ZNF391 EGR2

Genomic Location for FAM66C Gene

Chromosome:
12
Start:
8,180,209 bp from pter
End:
8,216,151 bp from pter
Size:
35,943 bases
Orientation:
Plus strand

Genomic View for FAM66C Gene

Genes around FAM66C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM66C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM66C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM66C Gene

Proteins for FAM66C Gene

Post-translational modifications for FAM66C Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM66C Gene

Domains & Families for FAM66C Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM66C Gene

Function for FAM66C Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM66C Gene

Localization for FAM66C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM66C Gene

Pathways & Interactions for FAM66C Gene

SuperPathways for FAM66C Gene

No Data Available

Interacting Proteins for FAM66C Gene

Gene Ontology (GO) - Biological Process for FAM66C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM66C Gene

Transcripts for FAM66C Gene

Unigene Clusters for FAM66C Gene

Family with sequence similarity 66, member C:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM66C Gene

No ASD Table

Relevant External Links for FAM66C Gene

GeneLoc Exon Structure for
FAM66C
ECgene alternative splicing isoforms for
FAM66C

Expression for FAM66C Gene

mRNA expression in normal human tissues for FAM66C Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM66C Gene:

FAM66C

SOURCE GeneReport for Unigene cluster for FAM66C Gene:

Hs.512257
genes like me logo Genes that share expression patterns with FAM66C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM66C Gene

Orthologs for FAM66C Gene

Evolution for FAM66C Gene

ENSEMBL:
Gene Tree for FAM66C (if available)
TreeFam:
Gene Tree for FAM66C (if available)

No data available for Orthologs for FAM66C Gene

Paralogs for FAM66C Gene

No data available for Paralogs for FAM66C Gene

Variants for FAM66C Gene

Sequence variations from dbSNP and Humsavar for FAM66C Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1051567 -- 8,195,443(+) CAATT(A/G)GTGGC intron-variant
rs1051568 -- 8,195,447(+) TGGTG(C/G)CTGCA intron-variant
rs1051569 -- 8,195,500(+) GTAAC(A/C)CTCAT intron-variant
rs1051570 -- 8,195,537(+) ATATC(G/T)GGAGT intron-variant
rs1051571 -- 8,195,546(+) GTCAG(A/T)CTCCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM66C Gene

Variant ID Type Subtype PubMed ID
dgv1358n100 CNV gain 25217958
dgv1359n100 CNV gain 25217958
dgv2339n54 CNV gain 21841781
esv1273398 CNV insertion 17803354
esv2759877 CNV gain+loss 17122850
esv29886 CNV gain+loss 19812545
nsv1159957 CNV duplication 26073780
nsv428270 CNV gain 18775914
nsv433419 CNV gain 18776910
nsv826226 CNV gain 20364138
nsv8899 CNV gain+loss 18304495
nsv976564 CNV duplication 23825009
nsv983270 CNV duplication 23825009

Relevant External Links for FAM66C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM66C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM66C Gene

Disorders for FAM66C Gene

Relevant External Links for FAM66C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM66C

No disorders were found for FAM66C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM66C Gene

Publications for FAM66C Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FAM66C Gene

Sources for FAM66C Gene

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