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Aliases for FAM66C Gene

Subcategory (RNA class) for FAM66C Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM66C Gene

  • Family With Sequence Similarity 66 Member C 2 3 5
  • Family With Sequence Similarity 66, Member C 2

External Ids for FAM66C Gene

Previous GeneCards Identifiers for FAM66C Gene

  • GC12P008225
  • GC12P008333

Summaries for FAM66C Gene

GeneCards Summary for FAM66C Gene

FAM66C (Family With Sequence Similarity 66 Member C) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM66C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM66C Gene

Genomics for FAM66C Gene

Regulatory Elements for FAM66C Gene

Enhancers for FAM66C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H007858 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -319.7 -319720 3.4 FEZF1 ZNF2 ZNF143 FOS ATF7 TSHZ1 ZNF488 REST ZSCAN16 STAT3 SLC2A14 NANOGP1 ENSG00000255356 LRRC23 DEFB109F FAM66C CLEC4E RPS20P29 LOC100130582
GH12H008197 0.8 Ensembl ENCODE 13.1 +17.7 17743 1.3 ZFHX2 CEBPG ATF7 ZIC2 FAM66C ENSG00000276417
GH12H008179 0.9 ENCODE 11.6 0.0 -39 1.1 HDGF RB1 ZNF76 KLF17 SIN3A GLI4 ZNF2 GLIS2 ZNF143 KLF7 CLEC4A FAM66C LINC00612 ZNF705A
GH12H008156 1 Ensembl ENCODE 0.3 -23.0 -23009 2 PKNOX1 JUN ZNF175 ZNF766 ZNF316 POLR2A ZSCAN5C NFE2 MAFK ZNF639 CLEC4A NECAP1 ZNF705A FAM66C
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM66C on UCSC Golden Path with GeneCards custom track

Promoters for FAM66C Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000048494 291 1001 HDGF RB1 ZNF76 KLF17 SIN3A GLI4 ZNF2 GLIS2 ZNF143 KLF7

Genomic Locations for FAM66C Gene

Genomic Locations for FAM66C Gene
chr12:8,180,209-8,216,151
(GRCh38/hg38)
Size:
35,943 bases
Orientation:
Plus strand
chr12:8,332,805-8,368,747
(GRCh37/hg19)

Genomic View for FAM66C Gene

Genes around FAM66C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM66C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM66C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM66C Gene

Proteins for FAM66C Gene

Post-translational modifications for FAM66C Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM66C Gene

Domains & Families for FAM66C Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM66C Gene

Function for FAM66C Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM66C Gene

Localization for FAM66C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM66C Gene

Pathways & Interactions for FAM66C Gene

SuperPathways for FAM66C Gene

No Data Available

Interacting Proteins for FAM66C Gene

Gene Ontology (GO) - Biological Process for FAM66C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM66C Gene

Drugs & Compounds for FAM66C Gene

No Compound Related Data Available

Transcripts for FAM66C Gene

Unigene Clusters for FAM66C Gene

Family with sequence similarity 66, member C:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM66C Gene

No ASD Table

Relevant External Links for FAM66C Gene

GeneLoc Exon Structure for
FAM66C
ECgene alternative splicing isoforms for
FAM66C

Expression for FAM66C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM66C Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM66C Gene:

FAM66C

SOURCE GeneReport for Unigene cluster for FAM66C Gene:

Hs.512257
genes like me logo Genes that share expression patterns with FAM66C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM66C Gene

Orthologs for FAM66C Gene

Evolution for FAM66C Gene

ENSEMBL:
Gene Tree for FAM66C (if available)
TreeFam:
Gene Tree for FAM66C (if available)

No data available for Orthologs for FAM66C Gene

Paralogs for FAM66C Gene

No data available for Paralogs for FAM66C Gene

Variants for FAM66C Gene

Sequence variations from dbSNP and Humsavar for FAM66C Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000249236 -- 8,190,845(+) ATTGT(A/G)TTATC intron-variant
rs1000612855 -- 8,191,201(+) TTTGT(C/T)ACATA intron-variant
rs1000741413 -- 8,183,726(+) CGGCT(C/G/T)GCTAC intron-variant
rs1001179569 -- 8,183,994(+) CGGCC(A/G)CCCGT intron-variant
rs1001293651 -- 8,197,086(+) CTGTC(A/G)ATGTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM66C Gene

Variant ID Type Subtype PubMed ID
nsv983270 CNV duplication 23825009
nsv976564 CNV duplication 23825009
nsv8899 CNV gain+loss 18304495
nsv826226 CNV gain 20364138
nsv433419 CNV gain 18776910
nsv428270 CNV gain 18775914
nsv1159957 CNV duplication 26073780
esv29886 CNV gain+loss 19812545
esv2759877 CNV gain+loss 17122850
esv1273398 CNV insertion 17803354
dgv2339n54 CNV gain 21841781
dgv1359n100 CNV gain 25217958
dgv1358n100 CNV gain 25217958

Relevant External Links for FAM66C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM66C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM66C Gene

Disorders for FAM66C Gene

Relevant External Links for FAM66C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM66C

No disorders were found for FAM66C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM66C Gene

Publications for FAM66C Gene

  1. Human gingiva transcriptome during wound healing. (PMID: 28005267) Wang Y … Tatakis DN (Journal of clinical periodontology 2016) 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for FAM66C Gene

Sources for FAM66C Gene

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