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Aliases for FAM66C Gene

Subcategory (RNA class) for FAM66C Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM66C Gene

  • Family With Sequence Similarity 66 Member C 2 3 5
  • Family With Sequence Similarity 66, Member C 2

External Ids for FAM66C Gene

Previous GeneCards Identifiers for FAM66C Gene

  • GC12P008225
  • GC12P008333

Summaries for FAM66C Gene

GeneCards Summary for FAM66C Gene

FAM66C (Family With Sequence Similarity 66 Member C) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM66C Gene

Genomics for FAM66C Gene

Regulatory Elements for FAM66C Gene

Enhancers for FAM66C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G007858 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -319.7 -319720 3.4 SIN3A FEZF1 ZNF2 ZNF143 FOS TSHZ1 ZNF488 REST TBX21 ZNF579 SLC2A14 NANOGP1 ENSG00000255356 DEFB109F FAM66C CLEC4E RPS20P29 LOC100130582
GH12G008909 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.4 +732.7 732653 7.1 HDGF HNRNPUL1 PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 FEZF1 ZNF2 PHC1 KLRG1 M6PR ENSG00000255829 MFAP5 FAM66C A2ML1 A2ML1-AS2 A2ML1-AS1
GH12G007796 1.2 Ensembl ENCODE dbSUPER 15.2 -381.4 -381372 4.6 BCOR ZNF792 ZNF10 ZNF781 RARA JUND ZNF316 ZNF34 POLR2A ZBTB33 FAM66C GNB3 NECAP1 ENO2 DPPA3 DEFB109F RPL13P5 DSTNP2 SLC2A3 NANOG
GH12G008029 0.8 dbSUPER 15.2 -149.9 -149881 1.0 PKNOX1 ZFP64 KLF7 ZNF202 ZNF680 ZNF654 SP3 ZBTB11 ZNF426 REST PHC1 FAM66C DEFB109F FOXJ2 GC12M007989
GH12G008197 0.9 Ensembl ENCODE 13.1 +17.7 17743 1.3 ZFHX2 PRDM6 ATF3 BCL6B FEZF1 CEBPG ZIC2 WT1 FAM66C ENSG00000276417
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM66C on UCSC Golden Path with GeneCards custom track

Promoters for FAM66C Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000048494 291 1001 HDGF ZNF76 KLF17 SIN3A GLI4 ZNF2 RAD21 GLIS2 ZNF143 KLF7

Genomic Location for FAM66C Gene

Chromosome:
12
Start:
8,180,209 bp from pter
End:
8,216,151 bp from pter
Size:
35,943 bases
Orientation:
Plus strand

Genomic View for FAM66C Gene

Genes around FAM66C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM66C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM66C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM66C Gene

Proteins for FAM66C Gene

Post-translational modifications for FAM66C Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM66C Gene

Domains & Families for FAM66C Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM66C Gene

Function for FAM66C Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM66C Gene

Localization for FAM66C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM66C Gene

Pathways & Interactions for FAM66C Gene

SuperPathways for FAM66C Gene

No Data Available

Interacting Proteins for FAM66C Gene

Gene Ontology (GO) - Biological Process for FAM66C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM66C Gene

Drugs & Compounds for FAM66C Gene

No Compound Related Data Available

Transcripts for FAM66C Gene

Unigene Clusters for FAM66C Gene

Family with sequence similarity 66, member C:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM66C Gene

No ASD Table

Relevant External Links for FAM66C Gene

GeneLoc Exon Structure for
FAM66C
ECgene alternative splicing isoforms for
FAM66C

Expression for FAM66C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM66C Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM66C Gene:

FAM66C

SOURCE GeneReport for Unigene cluster for FAM66C Gene:

Hs.512257
genes like me logo Genes that share expression patterns with FAM66C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM66C Gene

Orthologs for FAM66C Gene

Evolution for FAM66C Gene

ENSEMBL:
Gene Tree for FAM66C (if available)
TreeFam:
Gene Tree for FAM66C (if available)

No data available for Orthologs for FAM66C Gene

Paralogs for FAM66C Gene

No data available for Paralogs for FAM66C Gene

Variants for FAM66C Gene

Sequence variations from dbSNP and Humsavar for FAM66C Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000249236 -- 8,190,845(+) ATTGT(A/G)TTATC intron-variant
rs1000612855 -- 8,191,201(+) TTTGT(C/T)ACATA intron-variant
rs1000741413 -- 8,183,726(+) CGGCT(C/G/T)GCTAC intron-variant
rs1001179569 -- 8,183,994(+) CGGCC(A/G)CCCGT intron-variant
rs1001293651 -- 8,197,086(+) CTGTC(A/G)ATGTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM66C Gene

Variant ID Type Subtype PubMed ID
dgv1358n100 CNV gain 25217958
dgv1359n100 CNV gain 25217958
dgv2339n54 CNV gain 21841781
esv1273398 CNV insertion 17803354
esv2759877 CNV gain+loss 17122850
esv29886 CNV gain+loss 19812545
nsv1159957 CNV duplication 26073780
nsv428270 CNV gain 18775914
nsv433419 CNV gain 18776910
nsv826226 CNV gain 20364138
nsv8899 CNV gain+loss 18304495
nsv976564 CNV duplication 23825009
nsv983270 CNV duplication 23825009

Relevant External Links for FAM66C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM66C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM66C Gene

Disorders for FAM66C Gene

Relevant External Links for FAM66C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM66C

No disorders were found for FAM66C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM66C Gene

Publications for FAM66C Gene

  1. Human gingiva transcriptome during wound healing. (PMID: 28005267) Wang Y. … Tatakis D.N. (J. Clin. Periodontol. 2017) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FAM66C Gene

Sources for FAM66C Gene

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