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Aliases for FAM66B Gene

Subcategory (RNA class) for FAM66B Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM66B Gene

  • Family With Sequence Similarity 66 Member B 2 3 5
  • Family With Sequence Similarity 66, Member B 2
  • Family With Sequence Similarity 66, Member E 3
  • FAM66E 3

External Ids for FAM66B Gene

Previous GeneCards Identifiers for FAM66B Gene

  • GC08U900596
  • GC08M007168
  • GC08M006901

Summaries for FAM66B Gene

GeneCards Summary for FAM66B Gene

FAM66B (Family With Sequence Similarity 66 Member B) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM66B Gene

Genomics for FAM66B Gene

Regulatory Elements for FAM66B Gene

Enhancers for FAM66B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F006647 0.5 ENCODE 11.9 +706.4 706351 2.1 YBX1 ZNF48 ZNF416 KLF7 FOS SP3 YY2 NCOA1 JUNB TSHZ1 MCPH1 FAM66B LOC100287015 MCPH1-AS1 AGPAT5 ANGPT2 FAM90A20P ENSG00000271743 GC08P006647
GH08F008283 0.9 FANTOM5 Ensembl ENCODE 11.5 -931.9 -931852 7.8 PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 FOS SP5 ZHX2 JUNB FAM86B3P FAM66E FAM66B OR7E154P FAM90A11P ALG1L13P PRAG1
GH08F006641 0.9 Ensembl ENCODE 11.5 +713.1 713134 2.0 ZNF680 ZFP64 ZBTB11 BHLHE40 ZNF140 ZNF266 ZBTB8A REST ZNF623 ZNF518A FAM66B AGPAT5 MCPH1-AS1 ANGPT2 ENSG00000271743 GC08P006647 MIR8055
GH08F006816 0.6 ENCODE 10.4 +538.9 538931 0.1 CTCF ZNF654 WRNIP1 MAX REST ZNF644 RAD21 YY1 SMARCA4 KLF16 MCPH1-AS1 ANGPT2 FAM66B LOC100287015 ENSG00000271743 GS1-24F4.2 PIR35931
GH08F008309 0.9 Ensembl ENCODE 10.3 -956.1 -956125 4.2 SIN3A GLI4 ZNF48 ZNF121 ZNF143 FOS TSHZ1 PPARG ZNF518A SMARCB1 FAM86B3P FAM66E FAM66B FAM90A11P ALG1L13P PRAG1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FAM66B on UCSC Golden Path with GeneCards custom track

Promoters for FAM66B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001898261 453 1400 ZNF76 KLF17 RAD21 ZNF2 GLIS2 ZNF143 ZNF207 EGR2 ZNF202 ZNF654

Genomic Location for FAM66B Gene

Chromosome:
8
Start:
7,301,611 bp from pter
End:
7,355,354 bp from pter
Size:
53,744 bases
Orientation:
Minus strand

Genomic View for FAM66B Gene

Genes around FAM66B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM66B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM66B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM66B Gene

Proteins for FAM66B Gene

Post-translational modifications for FAM66B Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM66B Gene

Domains & Families for FAM66B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM66B Gene

Function for FAM66B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM66B Gene

Localization for FAM66B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM66B Gene

Pathways & Interactions for FAM66B Gene

SuperPathways for FAM66B Gene

No Data Available

Interacting Proteins for FAM66B Gene

Gene Ontology (GO) - Biological Process for FAM66B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM66B Gene

Transcripts for FAM66B Gene

mRNA/cDNA for FAM66B Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM66B Gene

Family with sequence similarity 66, member B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM66B Gene

No ASD Table

Relevant External Links for FAM66B Gene

GeneLoc Exon Structure for
FAM66B
ECgene alternative splicing isoforms for
FAM66B

Expression for FAM66B Gene

mRNA expression in normal human tissues for FAM66B Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM66B Gene:

FAM66B

SOURCE GeneReport for Unigene cluster for FAM66B Gene:

Hs.694680
genes like me logo Genes that share expression patterns with FAM66B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM66B Gene

Orthologs for FAM66B Gene

Evolution for FAM66B Gene

ENSEMBL:
Gene Tree for FAM66B (if available)
TreeFam:
Gene Tree for FAM66B (if available)

No data available for Orthologs for FAM66B Gene

Paralogs for FAM66B Gene

No data available for Paralogs for FAM66B Gene

Variants for FAM66B Gene

Sequence variations from dbSNP and Humsavar for FAM66B Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs111235196 -- 7,301,261(+) TCGTG(A/G)AAAAT downstream-variant-500B
rs111245715 -- 7,313,236(+) AATGA(A/G)ATGCC intron-variant
rs111317856 -- 7,308,431(+) GGCAC(C/T)GTACC intron-variant
rs11137098 -- 7,355,238(+) CGGAA(C/T)CTCCC nc-transcript-variant
rs11137099 -- 7,357,277(+) AGAAT(C/T)CATTG upstream-variant-2KB, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for FAM66B Gene

Variant ID Type Subtype PubMed ID
dgv11911n54 CNV loss 21841781
dgv11912n54 CNV loss 21841781
dgv11913n54 CNV gain 21841781
dgv11914n54 CNV gain 21841781
dgv1365e214 CNV gain 21293372
dgv2035e212 CNV gain 25503493
dgv3760n106 CNV duplication 24896259
dgv6878n100 CNV gain 25217958
dgv6879n100 CNV gain 25217958
dgv6882n100 CNV gain 25217958
dgv6884n100 CNV gain 25217958
dgv6885n100 CNV gain 25217958
dgv6887n100 CNV loss 25217958
dgv6888n100 CNV gain+loss 25217958
dgv6889n100 CNV loss 25217958
dgv6890n100 CNV gain 25217958
dgv6891n100 CNV gain+loss 25217958
dgv6892n100 CNV loss 25217958
dgv6893n100 CNV gain 25217958
dgv6894n100 CNV gain+loss 25217958
dgv6895n100 CNV loss 25217958
dgv6896n100 CNV gain+loss 25217958
dgv6897n100 CNV gain 25217958
dgv6898n100 CNV loss 25217958
dgv6899n100 CNV gain 25217958
dgv6900n100 CNV gain+loss 25217958
dgv6901n100 CNV gain+loss 25217958
dgv6902n100 CNV gain 25217958
dgv6903n100 CNV loss 25217958
dgv6904n100 CNV gain 25217958
dgv6905n100 CNV gain 25217958
dgv6906n100 CNV gain 25217958
dgv6907n100 CNV loss 25217958
dgv6908n100 CNV gain 25217958
dgv6909n100 CNV gain 25217958
dgv6910n100 CNV gain+loss 25217958
dgv6911n100 CNV loss 25217958
dgv6912n100 CNV loss 25217958
dgv6913n100 CNV gain 25217958
dgv6914n100 CNV gain+loss 25217958
dgv6915n100 CNV gain 25217958
esv1000362 CNV gain 20482838
esv21583 CNV gain+loss 19812545
esv2675221 CNV deletion 23128226
esv2759589 CNV gain+loss 17122850
esv2761169 CNV gain+loss 21179565
esv2764098 CNV gain+loss 21179565
esv33606 CNV gain+loss 17666407
esv3444162 CNV duplication 20981092
esv3616114 CNV loss 21293372
esv3616115 CNV loss 21293372
esv3616116 CNV loss 21293372
esv3891318 CNV gain 25118596
esv3891324 CNV gain 25118596
esv996398 CNV gain 20482838
nsv1023986 CNV loss 25217958
nsv1026778 CNV gain 25217958
nsv1027709 CNV gain+loss 25217958
nsv1028208 CNV loss 25217958
nsv1031577 CNV gain 25217958
nsv1075101 CNV deletion 25765185
nsv1076047 CNV deletion 25765185
nsv1078037 CNV duplication 25765185
nsv1144219 CNV deletion 24896259
nsv1144220 CNV deletion 24896259
nsv1161709 CNV duplication 26073780
nsv1161710 CNV deletion 26073780
nsv1161711 OTHER complex 26073780
nsv428194 CNV gain+loss 18775914
nsv471650 CNV gain+loss 15918152
nsv508495 CNV deletion 20534489
nsv509249 CNV insertion 20534489
nsv510977 OTHER complex 20534489
nsv515099 CNV gain 21397061
nsv515968 CNV gain+loss 19592680
nsv6066 CNV deletion 18451855
nsv610036 CNV loss 21841781
nsv610041 CNV loss 21841781
nsv821142 CNV deletion 20802225
nsv821656 CNV gain 15273396
nsv8281 CNV gain+loss 18304495
nsv831223 CNV loss 17160897
nsv831224 CNV gain+loss 17160897
nsv831225 CNV loss 17160897
nsv951091 CNV deletion 24416366
nsv971276 CNV duplication 23825009
nsv971277 CNV duplication 23825009
nsv971625 CNV duplication 23825009
nsv981904 CNV duplication 23825009

Relevant External Links for FAM66B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM66B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM66B Gene

Disorders for FAM66B Gene

Relevant External Links for FAM66B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM66B

No disorders were found for FAM66B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM66B Gene

Publications for FAM66B Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for FAM66B Gene

Sources for FAM66B Gene

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