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Aliases for FAM66A Gene

Subcategory (RNA class) for FAM66A Gene

processed_transcript

Quality Score for this RNA gene is

3

Aliases for FAM66A Gene

  • Family With Sequence Similarity 66, Member A 2 3

External Ids for FAM66A Gene

Summaries for FAM66A Gene

GeneCards Summary for FAM66A Gene

FAM66A (Family With Sequence Similarity 66, Member A) is a RNA Gene, and belongs to processed_transcript RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM66A Gene

Genomics for FAM66A Gene

Genomic Location for FAM66A Gene

Start:
12,362,019 bp from pter
End:
12,411,001 bp from pter
Size:
48,983 bases
Orientation:
Plus strand

Genomic View for FAM66A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM66A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM66A Gene

Regulatory Elements for FAM66A Gene

Proteins for FAM66A Gene

Post-translational modifications for FAM66A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM66A Gene

Domains for FAM66A Gene

Gene Families for FAM66A Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with FAM66A: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for FAM66A Gene

Function for FAM66A Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM66A Gene

Localization for FAM66A Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM66A Gene COMPARTMENTS Subcellular localization image for FAM66A gene
Compartment Confidence
nucleus 3
cytosol 1
extracellular 1

No data available for Gene Ontology (GO) - Cellular Components for FAM66A Gene

Pathways for FAM66A Gene

SuperPathways for FAM66A Gene

No Data Available

Interacting Proteins for FAM66A Gene

Gene Ontology (GO) - Biological Process for FAM66A Gene

None

No data available for Pathways by source for FAM66A Gene

Transcripts for FAM66A Gene

mRNA/cDNA for FAM66A Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM66A Gene

No ASD Table

Relevant External Links for FAM66A Gene

GeneLoc Exon Structure for
FAM66A
ECgene alternative splicing isoforms for
FAM66A

Expression for FAM66A Gene

mRNA expression in normal human tissues for FAM66A Gene

genes like me logo Genes that share expressions with FAM66A: view

Orthologs for FAM66A Gene

Evolution for FAM66A Gene

ENSEMBL:
Gene Tree for FAM66A (if available)
TreeFam:
Gene Tree for FAM66A (if available)

No data available for Orthologs for FAM66A Gene

Paralogs for FAM66A Gene

No data available for Paralogs for FAM66A Gene

Variants for FAM66A Gene

Sequence variations from dbSNP and Humsavar for FAM66A Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs2409904 -- 12,390,516(+) aaaaa(A/C)caaaa intron-variant
rs2409905 -- 12,392,383(+) cacct(A/G)cagag intron-variant
rs2409906 -- 12,392,395(+) caggg(A/C/G/T)cccca intron-variant
rs2684034 -- 12,392,470(-) ttgac(A/T)gggga intron-variant
rs2684035 -- 12,391,494(-) ccagc(A/C)tggtg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM66A Gene

Variant ID Type Subtype PubMed ID
nsv516685 CNV Gain+Loss 19592680
nsv428195 CNV Gain 18775914
dgv2199e1 CNV Complex 17122850
dgv2200e1 CNV Complex 17122850
esv2736614 CNV Deletion 23290073
dgv1270e199 CNV Deletion 23128226
dgv244e55 CNV Gain 17911159
nsv890374 CNV Gain 21882294
nsv8288 CNV Gain+Loss 18304495
dgv2203e1 CNV Complex 17122850
dgv2204e1 CNV Complex 17122850
nsv821657 CNV Loss 15273396
esv25198 CNV Gain+Loss 19812545
nsv831234 CNV Loss 17160897
nsv890376 CNV Loss 21882294
nsv890378 CNV Gain+Loss 21882294
nsv890380 CNV Gain 21882294
dgv2207e1 CNV Complex 17122850
nsv469553 CNV Loss 16826518
nsv471652 CNV Gain+Loss 15918152
esv2672709 CNV Deletion 23128226
nsv890381 CNV Gain 21882294
dgv7706n71 CNV Gain 21882294
nsv821220 CNV Deletion 20802225
nsv442421 CNV CNV 18776908
nsv824539 CNV Gain 20364138
dgv2208e1 CNV Complex 17122850
dgv2209e1 CNV Complex 17122850
dgv245e55 CNV Gain 17911159
dgv2210e1 CNV Complex 17122850
dgv246e55 CNV Gain 17911159
nsv824540 CNV Loss 20364138
dgv1172n67 CNV Gain 20364138
esv993011 CNV Gain 20482838
nsv831235 CNV Loss 17160897
nsv515064 CNV Complex 21397061
esv32998 CNV Gain+Loss 17666407
nsv438036 CNV Loss 16468122
esv2276035 CNV Deletion 18987734
esv2736623 CNV Deletion 23290073
nsv515065 CNV Complex 21397061
dgv140n17 CNV Loss 16327808
nsv511387 CNV Loss 21212237
dgv2211e1 CNV Complex 17122850
nsv515066 CNV Complex 21397061

Relevant External Links for FAM66A Gene

HapMap Linkage Disequilibrium report
FAM66A

Disorders for FAM66A Gene

No disorders were found for FAM66A Gene.

No data available for UniProtKB/Swiss-Prot for FAM66A Gene

Publications for FAM66A Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for FAM66A Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM66A
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM66A
    • Block miRNA regulation of FAM66A using miScript Target Protectors

    Sources for FAM66A Gene

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