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Aliases for FAM66A Gene

Subcategory (RNA class) for FAM66A Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM66A Gene

  • Family With Sequence Similarity 66 Member A 2 3 5
  • Family With Sequence Similarity 66, Member A 2

External Ids for FAM66A Gene

Previous GeneCards Identifiers for FAM66A Gene

  • GC08U900595
  • GC08P012266
  • GC08P012219
  • GC08P010909

Summaries for FAM66A Gene

GeneCards Summary for FAM66A Gene

FAM66A (Family With Sequence Similarity 66 Member A) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM66A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM66A Gene

Genomics for FAM66A Gene

GeneHancer (GH) Regulatory Elements for FAM66A Gene

Promoters and enhancers for FAM66A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I012361 Promoter 0.7 Ensembl 550.8 +0.3 281 1 ZFHX2 NRF1 ZBTB8A FAM66A ZNF705CP LOC100421094
GH08I011506 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 30.2 -849.9 -849890 12 PKNOX1 ZNF493 ZFP64 IRF4 ZNF213 FOS RUNX3 ZNF202 SP3 JUNB PINX1 LOC101929290 FAM90A2P MTMR9 FAM66A FAM167A LOC105379241 FAM66D FAM86B1 ENSG00000255354
GH08I011472 Enhancer 1.3 Ensembl ENCODE dbSUPER 22.7 -886.6 -886587 5.1 PKNOX1 FOXA2 SIN3A FEZF1 ZNF2 YY1 ZNF335 ZNF121 ELK1 ZNF366 FAM167A FAM66A FAM66D LOC105379241 LOC101929290 FAM90A2P FAM86B1 PINX1 ALG1L11P MTMR9
GH08I013264 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +908.9 908890 13.4 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 FOS SP5 ENPP7P6 RPS3AP34 LOC101930149 FAM66A ENSG00000255122 FAM86B2 DLC1 GC08M013255
GH08I011895 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 9 -464.5 -464489 3.3 HDGF PKNOX1 FOXA2 SMAD1 ARID4B IRF4 YY1 ZNF766 ZNF143 ATF7 ENSG00000255144 LOC101929290 CTSB LOC105379241 DEFB136 DEFB135 FAM66A OR7E158P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM66A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FAM66A gene promoter:

Genomic Locations for FAM66A Gene

Genomic Locations for FAM66A Gene
chr8:12,362,019-12,411,001
(GRCh38/hg38)
Size:
48,983 bases
Orientation:
Plus strand
chr8:12,219,527-12,268,510
(GRCh37/hg19)

Genomic View for FAM66A Gene

Genes around FAM66A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM66A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM66A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM66A Gene

Proteins for FAM66A Gene

Post-translational modifications for FAM66A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM66A Gene

Domains & Families for FAM66A Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM66A Gene

Function for FAM66A Gene

Phenotypes From GWAS Catalog for FAM66A Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM66A Gene

Localization for FAM66A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM66A Gene

Pathways & Interactions for FAM66A Gene

SuperPathways for FAM66A Gene

No Data Available

Interacting Proteins for FAM66A Gene

Gene Ontology (GO) - Biological Process for FAM66A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM66A Gene

Drugs & Compounds for FAM66A Gene

No Compound Related Data Available

Transcripts for FAM66A Gene

mRNA/cDNA for FAM66A Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM66A Gene

No ASD Table

Relevant External Links for FAM66A Gene

GeneLoc Exon Structure for
FAM66A
ECgene alternative splicing isoforms for
FAM66A

Expression for FAM66A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM66A Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM66A Gene:

FAM66A
genes like me logo Genes that share expression patterns with FAM66A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM66A Gene

Orthologs for FAM66A Gene

Evolution for FAM66A Gene

ENSEMBL:
Gene Tree for FAM66A (if available)
TreeFam:
Gene Tree for FAM66A (if available)

No data available for Orthologs for FAM66A Gene

Paralogs for FAM66A Gene

No data available for Paralogs for FAM66A Gene

Variants for FAM66A Gene

Sequence variations from dbSNP and Humsavar for FAM66A Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000104450 -- 12,400,312(+) G/T intron_variant
rs1000167008 -- 12,386,022(+) C/T intron_variant
rs1000231149 -- 12,384,660(+) G/A intron_variant
rs1000260719 -- 12,385,239(+) T/C intron_variant
rs1000486656 -- 12,368,196(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM66A Gene

Variant ID Type Subtype PubMed ID
dgv1172n67 CNV gain 20364138
dgv11967n54 CNV gain 21841781
dgv11968n54 CNV gain 21841781
dgv11969n54 CNV loss 21841781
dgv11970n54 CNV loss 21841781
dgv11971n54 CNV loss 21841781
dgv11972n54 CNV loss 21841781
dgv11973n54 CNV loss 21841781
dgv11974n54 CNV loss 21841781
dgv11975n54 CNV loss 21841781
dgv11976n54 CNV loss 21841781
dgv11977n54 CNV loss 21841781
dgv11978n54 CNV loss 21841781
dgv11979n54 CNV loss 21841781
dgv11980n54 CNV loss 21841781
dgv11981n54 CNV loss 21841781
dgv11982n54 CNV loss 21841781
dgv11983n54 CNV loss 21841781
dgv11984n54 CNV loss 21841781
dgv11985n54 CNV loss 21841781
dgv11986n54 CNV loss 21841781
dgv11987n54 CNV loss 21841781
dgv1270e199 CNV deletion 23128226
dgv1376e214 CNV gain 21293372
dgv140n17 CNV loss 16327808
dgv154e203 CNV gain+loss 21179565
dgv244e55 CNV gain 17911159
dgv245e55 CNV gain 17911159
dgv246e55 CNV gain 17911159
dgv263n111 CNV deletion 26073780
dgv264n111 CNV duplication 26073780
dgv3775n106 CNV deletion 24896259
dgv4082e59 CNV duplication 20981092
dgv7015n100 CNV gain 25217958
dgv7016n100 CNV gain 25217958
dgv7017n100 CNV gain 25217958
dgv7018n100 CNV gain+loss 25217958
dgv7019n100 CNV gain 25217958
dgv7020n100 CNV loss 25217958
dgv7021n100 CNV loss 25217958
dgv7025n100 CNV gain 25217958
dgv7026n100 CNV gain+loss 25217958
dgv7029n100 CNV gain+loss 25217958
dgv7030n100 CNV gain 25217958
dgv7031n100 CNV loss 25217958
dgv7032n100 CNV gain 25217958
dgv7033n100 CNV gain 25217958
dgv7034n100 CNV gain+loss 25217958
dgv7035n100 CNV loss 25217958
dgv7036n100 CNV gain 25217958
dgv7037n100 CNV loss 25217958
dgv7038n100 CNV loss 25217958
dgv7039n100 CNV gain+loss 25217958
dgv7040n100 CNV gain 25217958
dgv7041n100 CNV gain+loss 25217958
dgv7042n100 CNV loss 25217958
dgv7043n100 CNV gain 25217958
dgv7044n100 CNV loss 25217958
dgv7045n100 CNV gain+loss 25217958
dgv7046n100 CNV gain+loss 25217958
dgv7047n100 CNV gain+loss 25217958
dgv7048n100 CNV loss 25217958
dgv7049n100 CNV gain 25217958
dgv7050n100 CNV gain+loss 25217958
dgv7051n100 CNV gain 25217958
dgv7052n100 CNV gain+loss 25217958
dgv7053n100 CNV loss 25217958
dgv7054n100 CNV gain 25217958
dgv7055n100 CNV gain+loss 25217958
dgv7056n100 CNV gain 25217958
dgv7057n100 CNV loss 25217958
dgv7058n100 CNV loss 25217958
dgv7059n100 CNV loss 25217958
dgv7060n100 CNV loss 25217958
dgv7061n100 CNV loss 25217958
dgv7062n100 CNV loss 25217958
dgv7063n100 CNV gain+loss 25217958
dgv7064n100 CNV loss 25217958
dgv7065n100 CNV gain+loss 25217958
dgv7066n100 CNV gain 25217958
dgv7067n100 CNV loss 25217958
dgv7068n100 CNV gain+loss 25217958
dgv7069n100 CNV loss 25217958
dgv7070n100 CNV gain+loss 25217958
dgv7071n100 CNV gain 25217958
dgv7072n100 CNV loss 25217958
esv2276035 CNV deletion 18987734
esv25198 CNV gain+loss 19812545
esv2672709 CNV deletion 23128226
esv2736614 CNV deletion 23290073
esv2759593 CNV gain+loss 17122850
esv32998 CNV gain+loss 17666407
esv3336423 CNV duplication 20981092
esv3362477 CNV duplication 20981092
esv3403420 CNV duplication 20981092
esv3436982 CNV duplication 20981092
esv3543070 CNV deletion 23714750
esv3616273 CNV loss 21293372
esv3616274 CNV loss 21293372
esv3891340 CNV loss 25118596
esv3891341 CNV gain 25118596
esv993011 CNV gain 20482838
nsv1019015 CNV gain 25217958
nsv1020906 CNV loss 25217958
nsv1029157 CNV gain 25217958
nsv1032062 CNV gain 25217958
nsv1032173 CNV loss 25217958
nsv1032729 CNV gain+loss 25217958
nsv1032964 CNV gain 25217958
nsv1034659 CNV loss 25217958
nsv1075112 CNV deletion 25765185
nsv1076059 CNV deletion 25765185
nsv1078046 CNV duplication 25765185
nsv1115781 CNV duplication 24896259
nsv1161719 CNV deletion 26073780
nsv1161723 CNV duplication 26073780
nsv428195 CNV gain 18775914
nsv438036 CNV loss 16468122
nsv442421 CNV gain+loss 18776908
nsv469553 CNV loss 16826518
nsv471652 CNV gain+loss 15918152
nsv511387 CNV loss 21212237
nsv515064 CNV gain+loss 21397061
nsv515065 CNV gain 21397061
nsv515066 CNV gain+loss 21397061
nsv516685 CNV gain+loss 19592680
nsv610383 CNV loss 21841781
nsv610390 CNV loss 21841781
nsv610392 CNV loss 21841781
nsv821220 CNV deletion 20802225
nsv821657 CNV loss 15273396
nsv824539 CNV gain 20364138
nsv824540 CNV loss 20364138
nsv8288 CNV gain+loss 18304495
nsv831234 CNV loss 17160897
nsv831235 CNV loss 17160897
nsv951106 CNV deletion 24416366
nsv967566 CNV duplication 23825009
nsv971287 CNV duplication 23825009
nsv971628 CNV duplication 23825009
nsv971713 CNV duplication 23825009
nsv972105 CNV duplication 23825009
nsv981913 CNV duplication 23825009

Additional Variant Information for FAM66A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM66A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM66A Gene

Disorders for FAM66A Gene

Additional Disease Information for FAM66A

No disorders were found for FAM66A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM66A Gene

Publications for FAM66A Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for FAM66A Gene

Sources for FAM66A Gene

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