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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

FAM63A Gene

protein-coding   GIFtS: 49
GCID: GC01M150965

family with sequence similarity 63, member A

 Explore 1 disease affiliated with
FAM63A via our new
 Human Malady Compendium 
Biological research products
for FAM63A
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Family With Sequence Similarity 63, Member A1 2
FLJ112801
RP11-316M1.52
Protein FAM63A2
KIAA13903

External Ids:    HGNC: 256481   Entrez Gene: 557932   Ensembl: ENSG000001434097   UniProtKB: Q8N5J23   

Export aliases for FAM63A gene to outside databases

Previous GC identifers: GC01M147782 GC01M149232 GC01M122346


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

  --

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NC_018912.1  NT_004487.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the FAM63A gene promoter:
         STAT1   MAZR   ARP-1   c-Myb   IRF-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): FAM63A promoter sequence
   Search SABiosciences Chromatin IP Primers for FAM63A

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FAM63A


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q21.3   Ensembl cytogenetic band:  1q21.3   HGNC cytogenetic band: 1q21.2

FAM63A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FAM63A gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M150965:  view genomic region     (about GC identifiers)

Start:
150,969,025 bp from pter      End:
150,980,854 bp from pter
Size:
11,830 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: FA63A_HUMAN, Q8N5J2 (See protein sequence)
Recommended Name: Protein FAM63A  
Size: 469 amino acids; 51778 Da
Sequence caution: Sequence=BAA92628.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Secondary accessions: B3KWP4 B3KWV8 B4DXF2 B4E1S4 D3DV09 Q5SZF0 Q9NUL9 Q9P2F7
Alternative splicing: 4 isoforms:  Q8N5J2-1   Q8N5J2-2   Q8N5J2-3   Q8N5J2-4   

Explore the universe of human proteins at neXtProt for FAM63A: NX_Q8N5J2

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q8N5J2

  • FAM63A Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (5 alternative transcripts): 
    NP_001035307.1  NP_001156730.1  NP_001156731.1  NP_001156732.1  NP_060849.2  

    ENSEMBL proteins: 
     ENSP00000310923   ENSP00000354814   ENSP00000354669   ENSP00000437174   ENSP00000451524  

    Human Recombinant Protein Products: 
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    Browse ProSpec Recombinant Proteins
    Uscn Proteins for FAM63A

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--


    FAM63A for ontologies           About GeneDecksing



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    Uscn ELISAs and CLIAs for FAM63A


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    FAM63A for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR007518 DUF544

    Graphical View of Domain Structure for InterPro Entry Q8N5J2

    ProtoNet protein and cluster: Q8N5J2

    UniProtKB/Swiss-Prot: FA63A_HUMAN, Q8N5J2
    Similarity: Belongs to the FAM63 family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    miRNA
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    hsa-miR-3910 hsa-miR-1266 hsa-miR-520d-5p hsa-miR-524-5p hsa-miR-874
    SwitchGear 3'UTR luciferase reporter plasmidFAM63A 3' UTR sequence
    Inhib. RNA
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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM63A

    3 GenomeRNAi human phenotypes for FAM63A:
     Increased gamma-H2AX phosphory  Small cells  Synthetic lethal with Ras 

    Animal Models:
         7 MGI mutant phenotypes (inferred from 1 allele(MGI details for Fam63a):
     behavior/neurological  hematopoietic system  homeostasis/metabolism  immune system  limbs/digits/tail 
     other  skeleton 

    FAM63A for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FAM63A

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    5/12 Interacting proteins for FAM63A (Q8N5J21, 3 ENSP000003548144) via UniProtKB, MINT, STRING, and/or I2D (see all 12)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    NAA38O957771, 3, ENSP000002492994EBI-372322,EBI-347779 I2D: score=4 STRING: ENSP00000249299
    CSNK1G2P783683I2D: score=2 
    MMS19Q96T763I2D: score=2 
    ACOX1Q150673I2D: score=1 
    DIAPH1O606103I2D: score=1 
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--


    FAM63A for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for FAM63A
    Search CenterWatch for drugs/clinical trials and news about FAM63A / FA63A 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for FAM63A gene (5 alternative transcripts): 
    NM_001040217.2  NM_001163258.1  NM_001163259.1  NM_001163260.1  NM_018379.4  

    Unigene Cluster for FAM63A:

    Family with sequence similarity 63, member A
    Hs.743952  [show with all ESTs]
    Unigene Representative Sequence: AB037811
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000312210(uc001ewc.3 uc001ewd.3) ENST00000361936(uc010pcm.2 uc001ewf.3 uc010pcn.2 uc001ewg.3)
    ENST00000361738 ENST00000493834 ENST00000497067 ENST00000470877

    miRNA
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    5 QIAGEN miScript miRNA Assays for microRNAs that regulate FAM63A:
    hsa-miR-3910 hsa-miR-1266 hsa-miR-520d-5p hsa-miR-524-5p hsa-miR-874
    SwitchGear 3'UTR luciferase reporter plasmidFAM63A 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for FAM63A (see all 4)
    OriGene shRNA RFP: FAM63A
    OriGene siRNA: FAM63A
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat FAM63A
    Clone
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    Additional cDNA sequence: 

    AB037811.1 AK002142.1 AK125493.1 AK125959.1 AK301946.1 AK303962.1 BC014447.1 BC032321.1 
    BC075812.1 

    11 DOTS entries:

    DT.91756435  DT.100757406  DT.95275458  DT.92028140  DT.121440650  DT.121440675  DT.91756436  DT.91756439 
    DT.95275464  DT.91756437  DT.97785732 

    24/102 AceView cDNA sequences (see all 102):

    AK125959 CR594376 AA384330 BI822522 AL520489 AI963989 BI764092 BU074471 
    AB037811 BM851226 BM152677 AU158795 AL521015 BI912829 BX499560 AL707057 
    BU074294 AL520488 AK125493 BP361357 BC014447 CD244208 AL040235 BI761931 

    GeneLoc Exon Structure

    5/8 Alternative Splicing Database (ASD) splice patterns (SP) for FAM63A (see all 8)    About this scheme

    ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c · 3d · 3e ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b ^ 10 ^ 11a · 11b · 11c
    SP1:                          -     -     -     -                                                                                             
    SP2:                          -     -     -                                                                                                   
    SP3:                          -                                                                                                               
    SP4:                          -     -     -     -     -     -                                                                                 
    SP5:                          -     -                                                                                                         


    ECgene alternative splicing isoforms for FAM63A

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    FAM63A expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GTGGGCGCCT

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    FAM63A expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    2 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    BoneMandibular CondyleBone
    BoneMandibular FossaBone
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See FAM63A Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for FAM63A

    SOURCE GeneReport for Unigene cluster: Hs.743952
        SABiosciences Custom PCR Arrays for FAM63A
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM63A

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for FAM63A gene from 6/23 species (see all 23)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves LOC1008577951 protein FAM63A-like 71.41(n)
    74.41(a)
      100857795  XM_003642694.1  XP_003642742.1 
    lizard
    (Anolis carolinensis)
    Reptilia FAM63A6
    --
    76(a)
    1 ↔ 1
    GL344087.1(12379-18782)
    zebrafish
    (Danio rerio)
    Actinopterygii fam63a1 family with sequence similarity 63, member A 60.04(n)
    55.74(a)
      563470  NM_001100011.1  NP_001093481.1 
    worm
    (Caenorhabditis elegans)
    Secernentea Y55F3AM.91 Protein Y55F3AM.9 48.03(n)
    41.34(a)
      176920  NM_067622.3  NP_500023.1 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT4G118601 hypothetical protein 49.35(n)
    43.81(a)
      826793  NM_117256.2  NP_567383.1 
    rice
    (Oryza sativa)
    Liliopsida Os.206052 Oryza sativa (japonica cultivar-group) cDNA clone0 more 73.93(n)    AK067573.1 


    ENSEMBL Gene Tree for FAM63A (if available)
    TreeFam Gene Tree for FAM63A (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for FAM63A gene
    FAM63B2  
    1 SIMAP similar gene for FAM63A using alignment to 4 protein entries:     FA63A_HUMAN (see all proteins):
    FAM63B

    FAM63A for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10 NCBI SNPs in FAM63A are shown     About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1392614221,2
    C,--150977208(+) TCTCA-/AAAATA
    AAATAAAAT
    AAAAT
    5 -- int10--------
    rs362026901,2
    ----150977208(+) AAAAT-/AAAA  
      TAAAAT
    AAAAT
    1 -- int10--------
    rs710901151,2
    ----150968877(+) AAAAA-/AGAAAA 5 -- int11Minor allele frequency- A:0.00NA 2
    rs349362601,2
    ----150977215(+) AATAA-/AATA  
      AAATAA
    AATAA
    1 -- int10--------
    rs57777521,2
    ----150977216(+) ataaa-/ATAA  
      AATAAA
    ttaaa
    1 -- int10--------
    rs2008681521,2
    ----150977208(+) TCTCA-/AAAA  
      TAAAAT
    AAAAT
    1 -- int10--------
    rs362068871,2
    ----150977216(+) ATAAA-/ATAA  
      AATAAA
    ATAAA
    5 -- int10--------
    rs30340131,2
    ----150977212(-) tttta-/TTTTA 
            
    ttttt
    5 -- int10--------
    rs718078941,2
    ----150977210(+) AATAA-/AATAA 
            
    AATAA
    1 -- int10--------
    rs57777491,2
    ----150977211(+) ataaa-/ATAAA 
            
    ataaa
    1 -- int10--------

    HapMap Linkage Disequilibrium report for FAM63A (150969025 - 150980854 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for FAM63A: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FAM63A
    DNA2.0 Custom Variant and Variant Library Synthesis for FAM63A

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    FAM63A for disorders           About GeneDecksing

    1 disease for FAM63A:    About MalaCards
    kidney disease

    Human Genome Epidemiology (HuGE) Navigator: FAM63A (1 document)

    Export disorders for FAM63A gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for FAM63A gene, integrated from 9 sources (see all 13):
    (articles sorted by number of sources associating them with FAM63A)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10718198)1, 2, 3 Nagase T.... Ohara O. (2000)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    3. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
    4. Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
    5. A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
    6. New loci associated with kidney function and chronic kidney disease. (PubMed id 20383146)1 KAPttgen A....Fox C.S. (2010)
    7. A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)2 Dephoure N.... Gygi S.P. (2008)
    8. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)
    9. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
    10. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)2 Gregory S.G.... Bentley D.R. (2006)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 55793 HGNC: 25648 AceView: FLJ11280 Ensembl:ENSG00000143409 euGenes: HUgn55793
    ECgene: FAM63A H-InvDB: FAM63A

    (According to HUGE)
    About This Section
    HUGE: KIAA1390

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for FAM63A Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for FAM63A gene:
    Search GeneIP for patents involving FAM63A

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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