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Aliases for FAM53C Gene

Aliases for FAM53C Gene

  • Family With Sequence Similarity 53, Member C 2 3
  • C5orf6 3 4
  • Chromosome 5 Open Reading Frame 6 2
  • Putative Nuclear Protein 3
  • Protein FAM53C 3

External Ids for FAM53C Gene

Previous Symbols for FAM53C Gene

  • C5orf6

Summaries for FAM53C Gene

GeneCards Summary for FAM53C Gene

FAM53C (Family With Sequence Similarity 53, Member C) is a Protein Coding gene. An important paralog of this gene is FAM53A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM53C Gene

Genomics for FAM53C Gene

Genomic Location for FAM53C Gene

Start:
138,331,935 bp from pter
End:
138,349,729 bp from pter
Size:
17,795 bases
Orientation:
Plus strand

Genomic View for FAM53C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM53C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM53C Gene

Regulatory Elements for FAM53C Gene

Proteins for FAM53C Gene

  • Protein details for FAM53C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NYF3-FA53C_HUMAN
    Recommended name:
    Protein FAM53C
    Protein Accession:
    Q9NYF3
    Secondary Accessions:
    • B2RDJ5
    • D3DQB9

    Protein attributes for FAM53C Gene

    Size:
    392 amino acids
    Molecular mass:
    43091 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM53C Gene

Proteomics data for FAM53C Gene at MOPED

Post-translational modifications for FAM53C Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM53C Gene

No data available for DME Specific Peptides for FAM53C Gene

Domains for FAM53C Gene

Protein Domains for FAM53C Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM53C Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NYF3

UniProtKB/Swiss-Prot:

FA53C_HUMAN
Family:
  • Belongs to the FAM53 family.:
    • Q9NYF3
genes like me logo Genes that share domains with FAM53C: view

No data available for Gene Families for FAM53C Gene

Function for FAM53C Gene

Gene Ontology (GO) - Molecular Function for FAM53C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 20936779
genes like me logo Genes that share ontologies with FAM53C: view

miRNA for FAM53C Gene

miRTarBase miRNAs that target FAM53C

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for FAM53C Gene

Localization for FAM53C Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM53C Gene COMPARTMENTS Subcellular localization image for FAM53C gene
Compartment Confidence
nucleus 3
cytosol 2
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM53C Gene

Pathways for FAM53C Gene

SuperPathways for FAM53C Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM53C Gene

None

No data available for Pathways by source for FAM53C Gene

Transcripts for FAM53C Gene

Unigene Clusters for FAM53C Gene

Family with sequence similarity 53, member C:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM53C Gene

ExUns: 1a · 1b ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b · 4c · 4d · 4e ^ 5a · 5b ^ 6a · 6b
SP1: -
SP2: - - - - - -
SP3: -
SP4: - -
SP5: - - -
SP6: - - - - - - - - -
SP7: - - -
SP8:
SP9: - - - -

Relevant External Links for FAM53C Gene

GeneLoc Exon Structure for
FAM53C
ECgene alternative splicing isoforms for
FAM53C

Expression for FAM53C Gene

mRNA expression in normal human tissues for FAM53C Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FAM53C Gene

This gene is overexpressed in Whole Blood (8.4).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for FAM53C Gene

SOURCE GeneReport for Unigene cluster for FAM53C Gene Hs.54056

genes like me logo Genes that share expressions with FAM53C: view

No data available for mRNA Expression by UniProt/SwissProt for FAM53C Gene

Orthologs for FAM53C Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM53C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM53C 35
  • 99.49 (n)
  • 98.98 (a)
FAM53C 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM53C 35
  • 94.98 (n)
  • 96.68 (a)
FAM53C 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM53C 35
  • 94.98 (n)
  • 96.17 (a)
FAM53C 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam53c 35
  • 93.11 (n)
  • 94.64 (a)
Fam53c 16
Fam53c 36
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FAM53C 36
  • 79 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fam53c 35
  • 93.33 (n)
  • 94.87 (a)
lizard
(Anolis carolinensis)
Reptilia FAM53C 36
  • 48 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fam53c 35
  • 58.29 (n)
  • 54.32 (a)
zebrafish
(Danio rerio)
Actinopterygii FAM53C 36
  • 32 (a)
OneToOne
LOC100002393 35
  • 50.87 (n)
  • 42.16 (a)
Species with no ortholog for FAM53C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM53C Gene

ENSEMBL:
Gene Tree for FAM53C (if available)
TreeFam:
Gene Tree for FAM53C (if available)

Paralogs for FAM53C Gene

Paralogs for FAM53C Gene

genes like me logo Genes that share paralogs with FAM53C: view

Variants for FAM53C Gene

Sequence variations from dbSNP and Humsavar for FAM53C Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs16373 -- 138,347,855(+) GGCTC(-/AT/TA)CTCTC utr-variant-3-prime
rs740074 -- 138,348,641(+) CTCCT(C/T)GTCTC utr-variant-3-prime
rs1052648 -- 138,349,043(+) CCTTA(A/G)GGGAG utr-variant-3-prime
rs2189803 -- 138,348,973(-) CAGCT(C/T)AGGGC utr-variant-3-prime
rs2269952 -- 138,347,616(-) GCTGT(A/G)CCCCA utr-variant-3-prime

Relevant External Links for FAM53C Gene

HapMap Linkage Disequilibrium report
FAM53C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FAM53C Gene

Disorders for FAM53C Gene

No disorders were found for FAM53C Gene.

No data available for UniProtKB/Swiss-Prot for FAM53C Gene

Publications for FAM53C Gene

  1. cDNA cloning and genomic structure of three genes localized to human chromosome band 5q31 encoding potential nuclear proteins. (PMID: 11087669) Lai F. … Le Beau M.M. (Genomics 2000) 2 3 4
  2. Transcript map and comparative analysis of the 1.5-Mb commonly deleted segment of human 5q31 in malignant myeloid diseases with a del(5q). (PMID: 11161817) Lai F. … Le Beau M.M. (Genomics 2001) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for FAM53C Gene

Sources for FAM53C Gene

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