Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FAM53B-AS1 Gene

Subcategory (RNA class) for FAM53B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM53B-AS1 Gene

  • FAM53B Antisense RNA 1 2 3 5

External Ids for FAM53B-AS1 Gene

Previous GeneCards Identifiers for FAM53B-AS1 Gene

  • GC10P126398

Summaries for FAM53B-AS1 Gene

GeneCards Summary for FAM53B-AS1 Gene

FAM53B-AS1 (FAM53B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM53B-AS1 Gene

Genomics for FAM53B-AS1 Gene

Regulatory Elements for FAM53B-AS1 Gene

Enhancers for FAM53B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F124691 1.7 FANTOM5 Ensembl ENCODE 0.8 -2.0 -2031 20.0 HDGF ARNT WRNIP1 ARID4B SIN3A ZNF2 FOS ZNF263 TBX21 KAT8 METTL10 FAM53B LHPP ZRANB1 FAM53B-AS1 GC10M124645 PIR48648
GH10F124682 1.6 FANTOM5 Ensembl ENCODE 0.3 -17.0 -16964 8.1 TBP HDAC1 PKNOX1 TBL1XR1 SIN3A BMI1 ETV6 FOS CREM ZNF280D METTL10 FAM53B LHPP ZRANB1 FAM53B-AS1 PIR48648 GC10M124645
GH10F124669 1.4 FANTOM5 Ensembl ENCODE 0.3 -31.6 -31562 4.5 CTCF HDAC1 KLF1 PKNOX1 KLF17 ZIC2 RAD21 ZFHX2 POLR2A SCRT2 FAM53B METTL10 LHPP ZRANB1 FAM53B-AS1 GC10M124645 PIR48648
GH10F124674 1.3 FANTOM5 Ensembl ENCODE 0.3 -25.3 -25327 7.8 ZNF263 CTCF MAX REST ZNF623 NR2F2 ZNF23 POLR2A SCRT2 FOXP2 METTL10 FAM53B FAM175B FAM53B-AS1 GC10M124645 PIR48648
GH10F124635 1.7 FANTOM5 Ensembl ENCODE 0.2 -57.4 -57366 21.1 HDGF MLX WRNIP1 ARID4B FEZF1 DMAP1 ZNF48 YY1 FOS JUNB FAM53B CHST15 METTL10 FAM175B ZRANB1 LHPP GC10M124645 PIR48648 FAM53B-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM53B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM53B-AS1 Gene

Chromosome:
10
Start:
124,703,625 bp from pter
End:
124,714,774 bp from pter
Size:
11,150 bases
Orientation:
Plus strand

Genomic View for FAM53B-AS1 Gene

Genes around FAM53B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM53B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM53B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM53B-AS1 Gene

Proteins for FAM53B-AS1 Gene

Post-translational modifications for FAM53B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM53B-AS1 Gene

Domains & Families for FAM53B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM53B-AS1 Gene

Function for FAM53B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM53B-AS1 Gene

Localization for FAM53B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM53B-AS1 Gene

Pathways & Interactions for FAM53B-AS1 Gene

SuperPathways for FAM53B-AS1 Gene

No Data Available

Interacting Proteins for FAM53B-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM53B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM53B-AS1 Gene

Transcripts for FAM53B-AS1 Gene

mRNA/cDNA for FAM53B-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM53B-AS1 Gene

No ASD Table

Relevant External Links for FAM53B-AS1 Gene

GeneLoc Exon Structure for
FAM53B-AS1
ECgene alternative splicing isoforms for
FAM53B-AS1

Expression for FAM53B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM53B-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM53B-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x5.4).
genes like me logo Genes that share expression patterns with FAM53B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM53B-AS1 Gene

Orthologs for FAM53B-AS1 Gene

Evolution for FAM53B-AS1 Gene

ENSEMBL:
Gene Tree for FAM53B-AS1 (if available)
TreeFam:
Gene Tree for FAM53B-AS1 (if available)

No data available for Orthologs for FAM53B-AS1 Gene

Paralogs for FAM53B-AS1 Gene

No data available for Paralogs for FAM53B-AS1 Gene

Variants for FAM53B-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM53B-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10736891 -- 124,703,243(+) CGGGG(C/T)TTCAC intron-variant, upstream-variant-2KB
rs10751605 -- 124,712,630(+) TCTCC(C/T)GTGAC intron-variant
rs10901808 -- 124,710,590(+) TGGCC(A/C)AGAAA intron-variant
rs111419268 -- 124,705,313(+) AAGGC(A/G)GAGGC intron-variant
rs111609646 -- 124,711,469(+) ACAGC(A/G)AGTAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM53B-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv832014 CNV loss 17160897
nsv832013 CNV loss 17160897
nsv521161 CNV gain+loss 19592680
nsv470973 CNV loss 18288195
nsv1050837 CNV gain 25217958
esv3584565 CNV gain 24956385

Relevant External Links for FAM53B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM53B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM53B-AS1 Gene

Disorders for FAM53B-AS1 Gene

Relevant External Links for FAM53B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM53B-AS1

No disorders were found for FAM53B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM53B-AS1 Gene

Publications for FAM53B-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FAM53B-AS1 Gene

Sources for FAM53B-AS1 Gene

Content
Loading form....