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Aliases for FAM53B-AS1 Gene

Subcategory (RNA class) for FAM53B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM53B-AS1 Gene

  • FAM53B Antisense RNA 1 2 3 5

External Ids for FAM53B-AS1 Gene

Previous GeneCards Identifiers for FAM53B-AS1 Gene

  • GC10P126398

Summaries for FAM53B-AS1 Gene

GeneCards Summary for FAM53B-AS1 Gene

FAM53B-AS1 (FAM53B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM53B-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM53B-AS1 Gene

Genomics for FAM53B-AS1 Gene

GeneHancer (GH) Regulatory Elements for FAM53B-AS1 Gene

Promoters and enhancers for FAM53B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I124691 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.8 -2.2 -2218 19.6 HDGF CLOCK SMAD1 FOXA2 ARNT ARID4B IRF4 ZNF766 REST ZNF592 EEF1AKMT2 FAM53B LHPP ZRANB1 FAM53B-AS1 PIR45733 GC10M124645 PIR48648 ENSG00000258539
GH10I124714 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +19.2 19173 16.1 HDGF PKNOX1 FOXA2 SMAD1 MLX ARNT SIN3A IRF4 ZNF766 ZNF207 EEF1AKMT2 FAM53B ABRAXAS2 ZRANB1 GC10P124712 GC10P124736 FAM53B-AS1 ENSG00000258539
GH10I124682 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -16.9 -16934 8.1 PKNOX1 SMAD1 IRF4 ZNF766 ATF7 FOS RUNX3 JUNB ZNF592 SMARCA4 EEF1AKMT2 FAM53B LHPP ZRANB1 FAM53B-AS1 GC10M124645 PIR48648 ENSG00000258539
GH10I124670 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -31.4 -31436 4.3 HDAC1 PKNOX1 KLF17 EGR1 SCRT2 RCOR1 CREM EGR2 CEBPB REST FAM53B EEF1AKMT2 LHPP ZRANB1 FAM53B-AS1 GC10M124645 PIR48648 ENSG00000258539
GH10I124674 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -25.2 -25220 7.6 CTCF MAX ZNF623 NR2F2 ZNF23 POLR2A SCRT2 RCOR1 MYC SPI1 EEF1AKMT2 FAM53B ABRAXAS2 FAM53B-AS1 GC10M124645 PIR48648 ENSG00000258539
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM53B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM53B-AS1 Gene

Genomic Locations for FAM53B-AS1 Gene
chr10:124,703,625-124,714,774
(GRCh38/hg38)
Size:
11,150 bases
Orientation:
Plus strand
chr10:126,392,194-126,402,786
(GRCh37/hg19)

Genomic View for FAM53B-AS1 Gene

Genes around FAM53B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM53B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM53B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM53B-AS1 Gene

Proteins for FAM53B-AS1 Gene

Post-translational modifications for FAM53B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM53B-AS1 Gene

Domains & Families for FAM53B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM53B-AS1 Gene

Function for FAM53B-AS1 Gene

Phenotypes From GWAS Catalog for FAM53B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM53B-AS1 Gene

Localization for FAM53B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM53B-AS1 Gene

Pathways & Interactions for FAM53B-AS1 Gene

SuperPathways for FAM53B-AS1 Gene

No Data Available

Interacting Proteins for FAM53B-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM53B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM53B-AS1 Gene

Drugs & Compounds for FAM53B-AS1 Gene

No Compound Related Data Available

Transcripts for FAM53B-AS1 Gene

mRNA/cDNA for FAM53B-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM53B-AS1 Gene

No ASD Table

Relevant External Links for FAM53B-AS1 Gene

GeneLoc Exon Structure for
FAM53B-AS1
ECgene alternative splicing isoforms for
FAM53B-AS1

Expression for FAM53B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM53B-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM53B-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x5.4).
genes like me logo Genes that share expression patterns with FAM53B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM53B-AS1 Gene

Orthologs for FAM53B-AS1 Gene

Evolution for FAM53B-AS1 Gene

ENSEMBL:
Gene Tree for FAM53B-AS1 (if available)
TreeFam:
Gene Tree for FAM53B-AS1 (if available)

No data available for Orthologs for FAM53B-AS1 Gene

Paralogs for FAM53B-AS1 Gene

No data available for Paralogs for FAM53B-AS1 Gene

Variants for FAM53B-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM53B-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000257051 -- 124,709,173(+) G/A intron_variant
rs1000432990 -- 124,703,308(+) AAA/A upstream_transcript_variant
rs1000589639 -- 124,707,676(+) T/C intron_variant
rs1000696470 -- 124,702,896(+) T/A upstream_transcript_variant
rs1000879976 -- 124,712,873(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM53B-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3584565 CNV gain 24956385
nsv1050837 CNV gain 25217958
nsv470973 CNV loss 18288195
nsv521161 CNV gain+loss 19592680
nsv832013 CNV loss 17160897
nsv832014 CNV loss 17160897

Additional Variant Information for FAM53B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM53B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM53B-AS1 Gene

Disorders for FAM53B-AS1 Gene

Additional Disease Information for FAM53B-AS1

No disorders were found for FAM53B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM53B-AS1 Gene

Publications for FAM53B-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for FAM53B-AS1 Gene

Sources for FAM53B-AS1 Gene

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