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Aliases for FAM47E-STBD1 Gene

Aliases for FAM47E-STBD1 Gene

  • FAM47E-STBD1 Readthrough 2 3

External Ids for FAM47E-STBD1 Gene

Previous GeneCards Identifiers for FAM47E-STBD1 Gene

  • GC04U901512
  • GC04P077174

Summaries for FAM47E-STBD1 Gene

Entrez Gene Summary for FAM47E-STBD1 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring FAM47E (family with sequence similarity 47, member E) and STBD1 (starch binding domain 1) genes on chromosome 4. The read-through transcript encodes a protein that shares sequence identity with the upstream gene product but its C-terminal region is distinct due to frameshifts relative to the downstream gene. [provided by RefSeq, Jul 2011]

GeneCards Summary for FAM47E-STBD1 Gene

FAM47E-STBD1 (FAM47E-STBD1 Readthrough) is a Protein Coding gene. An important paralog of this gene is FAM47B.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM47E-STBD1 Gene

Genomics for FAM47E-STBD1 Gene

Genomic Location for FAM47E-STBD1 Gene

Start:
76,251,700 bp from pter
End:
76,311,130 bp from pter
Size:
59,431 bases
Orientation:
Plus strand

Genomic View for FAM47E-STBD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM47E-STBD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM47E-STBD1 Gene

No data available for Regulatory Elements for FAM47E-STBD1 Gene

Proteins for FAM47E-STBD1 Gene

  • Protein details for FAM47E-STBD1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    D6RA91
    Recommended name:
    Protein FAM47E-STBD1
    Protein Accession:
    D6RA91
    Secondary Accessions:

    Protein attributes for FAM47E-STBD1 Gene

    Size:
    191 amino acids
    Molecular mass:
    22177 Da
    Quaternary structure:
    No Data Available
  • Protein details for FAM47E-STBD1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    F6W5V1
    Recommended name:
    Protein FAM47E-STBD1
    Protein Accession:
    F6W5V1
    Secondary Accessions:

    Protein attributes for FAM47E-STBD1 Gene

    Size:
    53 amino acids
    Molecular mass:
    6126 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM47E-STBD1 Gene

Proteomics data for FAM47E-STBD1 Gene at MOPED

Post-translational modifications for FAM47E-STBD1 Gene

No Post-translational modifications

Other Protein References for FAM47E-STBD1 Gene

No data available for DME Specific Peptides for FAM47E-STBD1 Gene

Domains for FAM47E-STBD1 Gene

Protein Domains for FAM47E-STBD1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FAM47E-STBD1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM47E-STBD1 Gene

Function for FAM47E-STBD1 Gene

Phenotypes for FAM47E-STBD1 Gene

genes like me logo Genes that share phenotypes with FAM47E-STBD1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM47E-STBD1 Gene

Localization for FAM47E-STBD1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM47E-STBD1 Gene

Pathways for FAM47E-STBD1 Gene

SuperPathways for FAM47E-STBD1 Gene

No Data Available

Interacting Proteins for FAM47E-STBD1 Gene

Gene Ontology (GO) - Biological Process for FAM47E-STBD1 Gene

None

No data available for Pathways by source for FAM47E-STBD1 Gene

Transcripts for FAM47E-STBD1 Gene

mRNA/cDNA for FAM47E-STBD1 Gene

(1) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM47E-STBD1 Gene

No ASD Table

Relevant External Links for FAM47E-STBD1 Gene

GeneLoc Exon Structure for
FAM47E-STBD1
ECgene alternative splicing isoforms for
FAM47E-STBD1

Expression for FAM47E-STBD1 Gene

mRNA expression in normal human tissues for FAM47E-STBD1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM47E-STBD1 Gene

This gene is overexpressed in Muscle - Skeletal (7.3) and Liver (4.7).

Integrated Proteomics: protein expression from MaxQB for FAM47E-STBD1 Gene

genes like me logo Genes that share expressions with FAM47E-STBD1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for FAM47E-STBD1 Gene

Orthologs for FAM47E-STBD1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM47E-STBD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 85 (a)
OneToMany
cow
(Bos Taurus)
Mammalia -- 36
  • 49 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 55 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Fam47e 36
  • 35 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 31 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 29 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 30 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii zgc:158260 36
  • 20 (a)
ManyToMany
zgc:158260 36
  • 20 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4199 36
  • 19 (a)
OneToMany
Species with no ortholog for FAM47E-STBD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM47E-STBD1 Gene

ENSEMBL:
Gene Tree for FAM47E-STBD1 (if available)
TreeFam:
Gene Tree for FAM47E-STBD1 (if available)

Paralogs for FAM47E-STBD1 Gene

Paralogs for FAM47E-STBD1 Gene

Selected SIMAP similar genes for FAM47E-STBD1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM47E-STBD1: view

Variants for FAM47E-STBD1 Gene

Sequence variations from dbSNP and Humsavar for FAM47E-STBD1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs972113 -- 76,292,676(-) GAGAG(A/T)TTGGG intron-variant
rs1508335 -- 76,297,087(-) GAGGC(C/T)TCTTT intron-variant
rs1532985 -- 76,301,092(-) ATGGA(A/C)GAGGG intron-variant
rs1837871 -- 76,289,951(-) GGTGA(C/T)ACCCA intron-variant
rs1837872 -- 76,289,784(-) ctcaa(A/C)ggtca intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM47E-STBD1 Gene

Variant ID Type Subtype PubMed ID
nsv7363 OTHER Inversion 18451855
esv2661271 CNV Deletion 23128226
nsv516357 CNV Loss 19592680
esv2421530 CNV Deletion 20811451
nsv461559 CNV Loss 19166990

Relevant External Links for FAM47E-STBD1 Gene

HapMap Linkage Disequilibrium report
FAM47E-STBD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM47E-STBD1 Gene

Disorders for FAM47E-STBD1 Gene

No disorders were found for FAM47E-STBD1 Gene.

No data available for UniProtKB/Swiss-Prot for FAM47E-STBD1 Gene

Publications for FAM47E-STBD1 Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. Genome-wide association study reveals genetic risk underlying Parkinson's disease. (PMID: 19915575) SimA^n-SA!nchez J. … Gasser T. (Nat. Genet. 2009) 3
  5. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3

Products for FAM47E-STBD1 Gene

Sources for FAM47E-STBD1 Gene

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