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Aliases for FAM47E Gene

Aliases for FAM47E Gene

  • Family With Sequence Similarity 47, Member E 2 3
  • Similar To Genethonin 1 2

External Ids for FAM47E Gene

Summaries for FAM47E Gene

GeneCards Summary for FAM47E Gene

FAM47E (Family With Sequence Similarity 47, Member E) is a Protein Coding gene. GO annotations related to this gene include transcription cofactor activity. An important paralog of this gene is FAM47B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM47E Gene

Genomics for FAM47E Gene

Genomic Location for FAM47E Gene

Start:
76,214,040 bp from pter
End:
76,283,783 bp from pter
Size:
69,744 bases
Orientation:
Plus strand

Genomic View for FAM47E Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM47E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM47E Gene

Regulatory Elements for FAM47E Gene

Transcription factor binding sites by QIAGEN in the FAM47E gene promoter:

Proteins for FAM47E Gene

  • Protein details for FAM47E Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZV65-FA47E_HUMAN
    Recommended name:
    Protein FAM47E
    Protein Accession:
    Q6ZV65
    Secondary Accessions:
    • D6R8Y4

    Protein attributes for FAM47E Gene

    Size:
    393 amino acids
    Molecular mass:
    45662 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for FAM47E Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FAM47E Gene

Proteomics data for FAM47E Gene at MOPED

Post-translational modifications for FAM47E Gene

No Post-translational modifications

Other Protein References for FAM47E Gene

No data available for DME Specific Peptides for FAM47E Gene

Domains for FAM47E Gene

Protein Domains for FAM47E Gene

ProtoNet:

UniProtKB/Swiss-Prot:

FA47E_HUMAN
Family:
  • Belongs to the FAM47 family.:
    • Q6ZV65
genes like me logo Genes that share domains with FAM47E: view

No data available for Gene Families for FAM47E Gene

Function for FAM47E Gene

miRNA for FAM47E Gene

miRTarBase miRNAs that target FAM47E

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for FAM47E Gene

Localization for FAM47E Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM47E Gene COMPARTMENTS Subcellular localization image for FAM47E gene
Compartment Confidence
nucleus 3
cytoskeleton 1
cytosol 1
mitochondrion 1
plasma membrane 1

No data available for Gene Ontology (GO) - Cellular Components for FAM47E Gene

Pathways for FAM47E Gene

SuperPathways for FAM47E Gene

No Data Available

Interacting Proteins for FAM47E Gene

Gene Ontology (GO) - Biological Process for FAM47E Gene

None

No data available for Pathways by source for FAM47E Gene

Transcripts for FAM47E Gene

mRNA/cDNA for FAM47E Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM47E Gene

Family with sequence similarity 47, member E:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM47E Gene

No ASD Table

Relevant External Links for FAM47E Gene

GeneLoc Exon Structure for
FAM47E
ECgene alternative splicing isoforms for
FAM47E

Expression for FAM47E Gene

mRNA expression in normal human tissues for FAM47E Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for FAM47E Gene

SOURCE GeneReport for Unigene cluster for FAM47E Gene Hs.720509

genes like me logo Genes that share expressions with FAM47E: view

Orthologs for FAM47E Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM47E Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 97 (a)
OneToMany
FAM47E 36
  • 98.81 (n)
  • 97.2 (a)
cow
(Bos Taurus)
Mammalia -- 37
  • 53 (a)
OneToMany
FAM47E 36
  • 80.26 (n)
  • 68.57 (a)
dog
(Canis familiaris)
Mammalia -- 37
  • 63 (a)
OneToMany
FAM47E 36
  • 77.41 (n)
  • 65.18 (a)
mouse
(Mus musculus)
Mammalia Fam47e 36
  • 67.34 (n)
  • 57.87 (a)
Fam47e 16
Fam47e 37
  • 46 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 35 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 32 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Fam47e 36
  • 68.58 (n)
  • 57.81 (a)
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 30 (a)
ManyToMany
-- 37
  • 27 (a)
ManyToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100127812 36
  • 49.85 (n)
  • 39 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC100536753 36
  • 45.38 (n)
  • 33.11 (a)
zgc:158260 37
  • 23 (a)
ManyToMany
zgc:158260 37
  • 23 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4199 37
  • 22 (a)
OneToMany
Species with no ortholog for FAM47E:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM47E Gene

ENSEMBL:
Gene Tree for FAM47E (if available)
TreeFam:
Gene Tree for FAM47E (if available)

Paralogs for FAM47E Gene

Paralogs for FAM47E Gene

Selected SIMAP similar genes for FAM47E Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with FAM47E: view

Variants for FAM47E Gene

Sequence variations from dbSNP and Humsavar for FAM47E Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs920608 -- 76,217,307(+) CAGGA(A/C)TCTTC intron-variant
rs1114091 -- 76,223,106(+) TGTCA(A/G)CCTCT intron-variant
rs1348205 -- 76,224,246(+) attca(C/T)gggat intron-variant
rs1348206 -- 76,246,089(+) TCTAG(A/G)GAGAT intron-variant
rs1348207 -- 76,246,346(+) TGTAT(A/T)TGCTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM47E Gene

Variant ID Type Subtype PubMed ID
nsv7363 OTHER Inversion 18451855
esv2661271 CNV Deletion 23128226
nsv516357 CNV Loss 19592680
esv2421530 CNV Deletion 20811451
nsv461559 CNV Loss 19166990

Relevant External Links for FAM47E Gene

HapMap Linkage Disequilibrium report
FAM47E

Disorders for FAM47E Gene

Relevant External Links for FAM47E

Genetic Association Database (GAD)
FAM47E
Human Genome Epidemiology (HuGE) Navigator
FAM47E
genes like me logo Genes that share disorders with FAM47E: view

No data available for UniProtKB/Swiss-Prot for FAM47E Gene

Publications for FAM47E Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Genome-wide association study reveals genetic risk underlying Parkinson's disease. (PMID: 19915575) SimA^n-SA!nchez J. … Gasser T. (Nat. Genet. 2009) 3 49
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 49
  4. Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease. (PMID: 21738487) Do C.B. … Eriksson N. (PLoS Genet. 2011) 3 49
  5. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4

Products for FAM47E Gene

Sources for FAM47E Gene

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