Aliases for FAM47C Gene
Aliases for FAM47C Gene
External Ids for FAM47C Gene
- HGNC: 25301
- Entrez Gene: 442444
- Ensembl: ENSG00000198173
- UniProtKB: Q5HY64
Previous GeneCards Identifiers for FAM47C Gene
- GC0XP036936
Summaries for FAM47C Gene
-
This gene encodes a product belonging to a family of proteins with unknown function. The coding sequence of this family member includes several tandemly repeated regions. [provided by RefSeq, Sep 2011]
GeneCards Summary for FAM47C Gene
FAM47C (Family With Sequence Similarity 47 Member C) is a Protein Coding gene. An important paralog of this gene is FAM47A.
Additional gene information for FAM47C Gene
No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM47C Gene
Genomics for FAM47C Gene
GeneHancer (GH) Regulatory Elements for FAM47C Gene
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH0XI037008 | Promoter | 0.5 | EPDnew | 550.8 | 0.0 | -19 | 0.1 | FAM47C LOC100422408 |
- Top Transcription factor binding sites by QIAGEN in the FAM47C gene promoter:
Regulatory Element Products
Genomic Locations for FAM47C Gene
- chrX:37,008,359-37,011,666
- (GRCh38/hg38)
- Size:
- 3,308 bases
- Orientation:
- Plus strand
- chrX:37,026,432-37,029,739
- (GRCh37/hg19)
Genomic View for FAM47C Gene
- Cytogenetic band:
-
- Xp21.1 by Ensembl
- Xp21.1 by Entrez Gene
- Xp21.1 by HGNC


RefSeq DNA sequence for FAM47C Gene
Proteins for FAM47C Gene
-
Protein details for FAM47C Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q5HY64-FA47C_HUMAN
- Recommended name:
- Putative protein FAM47C
- Protein Accession:
- Q5HY64
- Q6ZU46
Protein attributes for FAM47C Gene
- Size:
- 1035 amino acids
- Molecular mass:
- 115338 Da
- Quaternary structure:
- No Data Available
- SequenceCaution:
-
- Sequence=BAC86381.1; Type=Erroneous initiation; Evidence={ECO:0000305};
Protein Expression for FAM47C Gene
Post-translational modifications for FAM47C Gene
Other Protein References for FAM47C Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Search GeneTex for Antibodies for FAM47C
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for FAM47C
- Origene Custom Protein Services for FAM47C
- Search GeneTex for Proteins for FAM47C
Assay Products
No data available for DME Specific Peptides for FAM47C Gene
Domains & Families for FAM47C Gene
Gene Families for FAM47C Gene
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
Suggested Antigen Peptide Sequences for FAM47C Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q5HY64- Family:
-
- Belongs to the FAM47 family.
Function for FAM47C Gene
Phenotypes for FAM47C Gene
- GenomeRNAi human phenotypes for FAM47C:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
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-
-
ViGene Biosciences lentiviral particle packaged cDNA for FAM47C gene
-
ViGene Biosciences ready-to-package AAV shRNAs for FAM47C gene
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CRISPR Products
-
OriGene CRISPR knockouts for FAM47C
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- Applied Biological Materials CRISPR for FAM47C
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for FAM47C
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miRNA for FAM47C Gene
- miRTarBase miRNAs that target FAM47C
miRNA Products
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Inhibitory RNA Products
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-
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Clone Products
- VectorBuilder custom plasmid, inducible vectors for FAM47C
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-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- genomics-online: cdna clones - Search results for available FAM47C gene related products
- orf clones - Search results for available FAM47C gene related products
- Applied Biological Materials Clones for FAM47C
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
-
Horizon Cell Lines for FAM47C
-
ViGene Biosciences adenoviral particle packaged cDNA for FAM47C gene
-
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No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM47C Gene
Localization for FAM47C Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM47C Gene
Transcripts for FAM47C Gene
mRNA/cDNA for FAM47C Gene
- (1) REFSEQ mRNAs :
- (1) Additional mRNA sequences :
- (6) Selected AceView cDNA sequences:
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for FAM47C Gene
- Family with sequence similarity 47, member C:
- Representative Sequences:
CRISPR Products
-
OriGene CRISPR knockouts for FAM47C
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- Applied Biological Materials CRISPR for FAM47C
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for FAM47C
- GenScript: Design CRISPR guide RNA sequences for FAM47C
miRNA Products
- Search ViGene Biosciences for FAM47C
Inhibitory RNA Products
- Origene shrna, RNAi, and sirna products in human, mouse, rat for FAM47C
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- genomics-online: shRNA clones - Search results for available FAM47C gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for FAM47C gene
Clone Products
- VectorBuilder custom plasmid, inducible vectors for FAM47C
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for FAM47C
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- genomics-online: cdna clones - Search results for available FAM47C gene related products
- orf clones - Search results for available FAM47C gene related products
- Applied Biological Materials Clones for FAM47C
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for FAM47C Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Inner Cell Mass (Early Embryonic Tissues)
-
Testis (Reproductive System)
mRNA differential expression in normal tissues according to GTEx for FAM47C Gene
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM47C Gene
NURSA nuclear receptor signaling pathways regulating expression of FAM47C Gene:
FAM47CSOURCE GeneReport for Unigene cluster for FAM47C Gene:
Hs.535216Primer Products
- genomics-online: primer clones - Search results for available FAM47C gene related products
No data available for mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM47C Gene
Orthologs for FAM47C Gene
This gene was present in the common ancestor of chordates.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
chimpanzee (Pan troglodytes) |
Mammalia | FAM47C 34 |
|
OneToOne | |
LOC473867 33 |
|
||||
dog (Canis familiaris) |
Mammalia | -- 34 |
|
OneToMany | |
mouse (Mus musculus) |
Mammalia | Fam47c 34 |
|
ManyToMany | |
4930480E11Rik 34 |
|
ManyToMany | |||
4930402K13Rik 34 |
|
ManyToMany | |||
oppossum (Monodelphis domestica) |
Mammalia | -- 34 |
|
OneToMany | |
platypus (Ornithorhynchus anatinus) |
Mammalia | -- 34 |
|
OneToMany | |
lizard (Anolis carolinensis) |
Reptilia | -- 34 |
|
ManyToMany | |
-- 34 |
|
ManyToMany | |||
zebrafish (Danio rerio) |
Actinopterygii | zgc:158260 34 34 |
|
ManyToMany | |
sea squirt (Ciona savignyi) |
Ascidiacea | CSA.4199 34 |
|
OneToMany |
- Species where no ortholog for FAM47C was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- cow (Bos Taurus)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for FAM47C Gene
(1) SIMAP similar genes for FAM47C Gene using alignment to 1 proteins:
Pseudogenes.org Pseudogenes for FAM47C Gene
Variants for FAM47C Gene
SNP ID | Clin | Chr 0X pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs112924019 | -- | 37,008,275(+) | G/A/C | upstream_transcript_variant | |
rs113171765 | -- | 37,012,123(+) | G/A | downstream_transcript_variant | |
rs113759376 | -- | 37,009,155(+) | G/A/C | coding_sequence_variant, missense_variant | |
rs138169403 | -- | 37,009,941(+) | C/T | coding_sequence_variant, missense_variant | |
rs138293293 | -- | 37,010,575(+) | G/A/T | coding_sequence_variant, missense_variant |
Additional Variant Information for FAM47C Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- FAM47C
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FAM47C Gene
Disorders for FAM47C Gene
Additional Disease Information for FAM47C
No disorders were found for FAM47C Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM47C Gene
Publications for FAM47C Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
- The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 4 58
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4 58
Products for FAM47C Gene
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- Cyagen custom Knockout/knockin (KOKI) mouse models for FAM47C
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- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for FAM47C
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- antibodies-online: Search results for available FAM47C related products ranked by validation data
- antibodies-online: Search results for available FAM47C related products ranked by validation data
- antibodies-online: Search results for available FAM47C related products ranked by validation data
- Search GeneTex for Antibodies for FAM47C
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- ViGene Biosciences adenoviral particle packaged cDNA for FAM47C gene
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- Search ViGene Biosciences for FAM47C
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- genomics-online: cdna clones - Search results for available FAM47C gene related products
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Sources for FAM47C Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew