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Aliases for FAM47C Gene

Aliases for FAM47C Gene

  • Family With Sequence Similarity 47, Member C 2 3

External Ids for FAM47C Gene

Summaries for FAM47C Gene

Entrez Gene Summary for FAM47C Gene

  • This gene encodes a product belonging to a family of proteins with unknown function. The coding sequence of this family member includes several tandemly repeated regions. [provided by RefSeq, Sep 2011]

GeneCards Summary for FAM47C Gene

FAM47C (Family With Sequence Similarity 47, Member C) is a Protein Coding gene. An important paralog of this gene is FAM47B.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM47C Gene

Genomics for FAM47C Gene

Genomic Location for FAM47C Gene

Start:
37,008,359 bp from pter
End:
37,011,666 bp from pter
Size:
3,308 bases
Orientation:
Plus strand

Genomic View for FAM47C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM47C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM47C Gene

Regulatory Elements for FAM47C Gene

Proteins for FAM47C Gene

  • Protein details for FAM47C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5HY64-FA47C_HUMAN
    Recommended name:
    Putative protein FAM47C
    Protein Accession:
    Q5HY64
    Secondary Accessions:
    • Q6ZU46

    Protein attributes for FAM47C Gene

    Size:
    1035 amino acids
    Molecular mass:
    115338 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC86381.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for FAM47C Gene

Proteomics data for FAM47C Gene at MOPED

Post-translational modifications for FAM47C Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM47C Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM47C Gene

Domains for FAM47C Gene

Protein Domains for FAM47C Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

FA47C_HUMAN
Family:
  • Belongs to the FAM47 family.:
    • Q5HY64
genes like me logo Genes that share domains with FAM47C: view

No data available for Gene Families for FAM47C Gene

Function for FAM47C Gene

miRNA for FAM47C Gene

miRTarBase miRNAs that target FAM47C

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for FAM47C Gene

Localization for FAM47C Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM47C Gene COMPARTMENTS Subcellular localization image for FAM47C gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for FAM47C Gene

Pathways for FAM47C Gene

SuperPathways for FAM47C Gene

No Data Available

Interacting Proteins for FAM47C Gene

Gene Ontology (GO) - Biological Process for FAM47C Gene

None

No data available for Pathways by source for FAM47C Gene

Transcripts for FAM47C Gene

mRNA/cDNA for FAM47C Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM47C Gene

Family with sequence similarity 47, member C:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM47C Gene

No ASD Table

Relevant External Links for FAM47C Gene

GeneLoc Exon Structure for
FAM47C
ECgene alternative splicing isoforms for
FAM47C

Expression for FAM47C Gene

mRNA expression in normal human tissues for FAM47C Gene

mRNA differential expression in normal tissues according to GTEx for FAM47C Gene

This gene is overexpressed in Testis (41.4).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for FAM47C Gene

SOURCE GeneReport for Unigene cluster for FAM47C Gene Hs.535216

genes like me logo Genes that share expressions with FAM47C: view

Orthologs for FAM47C Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM47C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM47C 37
  • 92 (a)
OneToOne
LOC473867 36
  • 88.01 (n)
  • 84.66 (a)
dog
(Canis familiaris)
Mammalia -- 37
  • 46 (a)
OneToMany
mouse
(Mus musculus)
Mammalia 4930402K13Rik 37
  • 20 (a)
ManyToMany
4930480E11Rik 37
  • 25 (a)
ManyToMany
Fam47c 37
  • 37 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 28 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 25 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 26 (a)
ManyToMany
-- 37
  • 22 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii zgc:158260 37
  • 23 (a)
ManyToMany
zgc:158260 37
  • 22 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4199 37
  • 20 (a)
OneToMany
Species with no ortholog for FAM47C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM47C Gene

ENSEMBL:
Gene Tree for FAM47C (if available)
TreeFam:
Gene Tree for FAM47C (if available)

Paralogs for FAM47C Gene

Paralogs for FAM47C Gene

Selected SIMAP similar genes for FAM47C Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for FAM47C Gene

genes like me logo Genes that share paralogs with FAM47C: view

Variants for FAM47C Gene

Sequence variations from dbSNP and Humsavar for FAM47C Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs1995914 - 37,011,181(+) CCAGA(A/C)TGCAC reference, missense
rs1995915 -- 37,011,265(+) GCTAA(A/G)AAGTG missense, reference
rs2731737 -- 37,008,424(+) CCAGA(A/G)GCCGC missense, reference
rs28495724 -- 37,007,000(+) CTGAT(A/G)TTATT upstream-variant-2KB
rs28592679 -- 37,011,705(+) TTTAT(A/G)TGATT downstream-variant-500B

Relevant External Links for FAM47C Gene

HapMap Linkage Disequilibrium report
FAM47C
Locus Specific Mutation Databases (LSDB)
FAM47C

No data available for Structural Variations from Database of Genomic Variants (DGV) for FAM47C Gene

Disorders for FAM47C Gene

No disorders were found for FAM47C Gene.

No data available for UniProtKB/Swiss-Prot for FAM47C Gene

Publications for FAM47C Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 4

Products for FAM47C Gene

Sources for FAM47C Gene

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