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Aliases for FAM47B Gene

Aliases for FAM47B Gene

  • Family With Sequence Similarity 47, Member B 2 3

External Ids for FAM47B Gene

Summaries for FAM47B Gene

GeneCards Summary for FAM47B Gene

FAM47B (Family With Sequence Similarity 47, Member B) is a Protein Coding gene. An important paralog of this gene is FAM47C.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM47B Gene

Genomics for FAM47B Gene

Genomic Location for FAM47B Gene

Start:
34,942,796 bp from pter
End:
34,944,917 bp from pter
Size:
2,122 bases
Orientation:
Plus strand

Genomic View for FAM47B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM47B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM47B Gene

Regulatory Elements for FAM47B Gene

Proteins for FAM47B Gene

  • Protein details for FAM47B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NA70-FA47B_HUMAN
    Recommended name:
    Protein FAM47B
    Protein Accession:
    Q8NA70
    Secondary Accessions:
    • Q5JQN5
    • Q6PIG3

    Protein attributes for FAM47B Gene

    Size:
    645 amino acids
    Molecular mass:
    73945 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM47B Gene

Proteomics data for FAM47B Gene at MOPED

Post-translational modifications for FAM47B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM47B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM47B Gene

Domains for FAM47B Gene

Protein Domains for FAM47B Gene

ProtoNet:

UniProtKB/Swiss-Prot:

FA47B_HUMAN
Family:
  • Belongs to the FAM47 family.:
    • Q8NA70
genes like me logo Genes that share domains with FAM47B: view

No data available for Gene Families for FAM47B Gene

Function for FAM47B Gene

miRNA for FAM47B Gene

miRTarBase miRNAs that target FAM47B

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for FAM47B Gene

Localization for FAM47B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM47B Gene COMPARTMENTS Subcellular localization image for FAM47B gene
Compartment Confidence
nucleus 3
cytosol 1

No data available for Gene Ontology (GO) - Cellular Components for FAM47B Gene

Pathways for FAM47B Gene

SuperPathways for FAM47B Gene

No Data Available

Interacting Proteins for FAM47B Gene

Gene Ontology (GO) - Biological Process for FAM47B Gene

None

No data available for Pathways by source for FAM47B Gene

Transcripts for FAM47B Gene

mRNA/cDNA for FAM47B Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(14) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM47B Gene

Family with sequence similarity 47, member B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM47B Gene

No ASD Table

Relevant External Links for FAM47B Gene

GeneLoc Exon Structure for
FAM47B
ECgene alternative splicing isoforms for
FAM47B

Expression for FAM47B Gene

mRNA expression in normal human tissues for FAM47B Gene

mRNA differential expression in normal tissues according to GTEx for FAM47B Gene

This gene is overexpressed in Testis (52.6).

SOURCE GeneReport for Unigene cluster for FAM47B Gene Hs.197801

genes like me logo Genes that share expressions with FAM47B: view

Orthologs for FAM47B Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM47B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM47B 37
  • 95 (a)
OneToOne
LOC473866 36
  • 84.92 (n)
  • 71.09 (a)
dog
(Canis familiaris)
Mammalia -- 37
  • 45 (a)
OneToMany
mouse
(Mus musculus)
Mammalia 4930402K13Rik 37
  • 21 (a)
ManyToMany
4930480E11Rik 37
  • 25 (a)
ManyToMany
Fam47c 37
  • 37 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 27 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 26 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 24 (a)
ManyToMany
-- 37
  • 21 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii zgc:158260 37
  • 23 (a)
ManyToMany
zgc:158260 37
  • 22 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4199 37
  • 20 (a)
OneToMany
Species with no ortholog for FAM47B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM47B Gene

ENSEMBL:
Gene Tree for FAM47B (if available)
TreeFam:
Gene Tree for FAM47B (if available)

Paralogs for FAM47B Gene

Paralogs for FAM47B Gene

Selected SIMAP similar genes for FAM47B Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for FAM47B Gene

genes like me logo Genes that share paralogs with FAM47B: view

Variants for FAM47B Gene

Sequence variations from dbSNP and Humsavar for FAM47B Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs3109502 -- 34,942,185(-) TTTTT(A/G)TAAAG upstream-variant-2KB
rs4829344 -- 34,940,878(+) TGTGT(A/G)TGTGT upstream-variant-2KB
rs4999833 -- 34,943,147(+) TTTCC(A/G)AGCTC missense, reference
rs5927343 -- 34,941,658(+) caaaa(A/C)aaaac upstream-variant-2KB
rs5973297 -- 34,940,888(+) TGTGT(G/T)TGTTT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FAM47B Gene

Variant ID Type Subtype PubMed ID
esv2664433 CNV Deletion 23128226
nsv519107 CNV Gain 19592680
nsv527976 CNV Gain 19592680

Relevant External Links for FAM47B Gene

HapMap Linkage Disequilibrium report
FAM47B
Locus Specific Mutation Databases (LSDB)
FAM47B

Disorders for FAM47B Gene

Relevant External Links for FAM47B

Genetic Association Database (GAD)
FAM47B
genes like me logo Genes that share disorders with FAM47B: view

No data available for UniProtKB/Swiss-Prot for FAM47B Gene

Publications for FAM47B Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  4. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3
  5. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan R.S. … Benjamin E.J. (BMC Med. Genet. 2007) 49

Products for FAM47B Gene

Sources for FAM47B Gene

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