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Aliases for FAM47A Gene

Aliases for FAM47A Gene

  • Family With Sequence Similarity 47, Member A 2 3
  • Similar To Hypothetical Protein FLJ35782 2

External Ids for FAM47A Gene

Previous GeneCards Identifiers for FAM47A Gene

  • GC0XM033907
  • GC0XM031885

Summaries for FAM47A Gene

GeneCards Summary for FAM47A Gene

FAM47A (Family With Sequence Similarity 47, Member A) is a Protein Coding gene. An important paralog of this gene is FAM47B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM47A Gene

Genomics for FAM47A Gene

Regulatory Elements for FAM47A Gene

Genomic Location for FAM47A Gene

Start:
34,129,752 bp from pter
End:
34,132,330 bp from pter
Size:
2,579 bases
Orientation:
Minus strand

Genomic View for FAM47A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM47A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM47A Gene

Proteins for FAM47A Gene

  • Protein details for FAM47A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5JRC9-FA47A_HUMAN
    Recommended name:
    Protein FAM47A
    Protein Accession:
    Q5JRC9
    Secondary Accessions:
    • A8K8I9
    • Q8TAA0

    Protein attributes for FAM47A Gene

    Size:
    791 amino acids
    Molecular mass:
    90592 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM47A Gene

Proteomics data for FAM47A Gene at MOPED

Post-translational modifications for FAM47A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM47A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM47A Gene

Domains for FAM47A Gene

Protein Domains for FAM47A Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM47A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5JRC9

UniProtKB/Swiss-Prot:

FA47A_HUMAN :
  • Q5JRC9
Family:
  • Belongs to the FAM47 family.
genes like me logo Genes that share domains with FAM47A: view

No data available for Gene Families for FAM47A Gene

Function for FAM47A Gene

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM47A

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM47A Gene

Localization for FAM47A Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM47A Gene COMPARTMENTS Subcellular localization image for FAM47A gene
Compartment Confidence
nucleus 3
cytosol 2
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM47A Gene

Pathways for FAM47A Gene

SuperPathways for FAM47A Gene

No Data Available

Interacting Proteins for FAM47A Gene

Gene Ontology (GO) - Biological Process for FAM47A Gene

None

No data available for Pathways by source for FAM47A Gene

Transcripts for FAM47A Gene

mRNA/cDNA for FAM47A Gene

(2) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM47A Gene

Family with sequence similarity 47, member A:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM47A

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for FAM47A
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM47A Gene

No ASD Table

Relevant External Links for FAM47A Gene

GeneLoc Exon Structure for
FAM47A
ECgene alternative splicing isoforms for
FAM47A

Expression for FAM47A Gene

mRNA expression in normal human tissues for FAM47A Gene

mRNA differential expression in normal tissues according to GTEx for FAM47A Gene

This gene is overexpressed in Testis (51.6).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for FAM47A Gene

SOURCE GeneReport for Unigene cluster for FAM47A Gene Hs.143268

genes like me logo Genes that share expressions with FAM47A: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for FAM47A Gene

Orthologs for FAM47A Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM47A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 63 (a)
ManyToMany
FAM47A 35
  • 99.13 (n)
  • 98.16 (a)
cow
(Bos Taurus)
Mammalia FAM47A 35
  • 69.76 (n)
  • 52.46 (a)
dog
(Canis familiaris)
Mammalia -- 36
  • 47 (a)
OneToMany
mouse
(Mus musculus)
Mammalia 4930402K13Rik 36
  • 21 (a)
ManyToMany
4930480E11Rik 36
  • 27 (a)
ManyToMany
Fam47c 35
  • 61.96 (n)
  • 44.8 (a)
Fam47c 16
Fam47c 36
  • 37 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 28 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 27 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Fam47a 35
  • 59.9 (n)
  • 44.01 (a)
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 28 (a)
ManyToMany
-- 36
  • 23 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii zgc:158260 36
  • 22 (a)
ManyToMany
zgc:158260 36
  • 21 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4199 36
  • 20 (a)
OneToMany
Species with no ortholog for FAM47A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM47A Gene

ENSEMBL:
Gene Tree for FAM47A (if available)
TreeFam:
Gene Tree for FAM47A (if available)

Paralogs for FAM47A Gene

Paralogs for FAM47A Gene

Selected SIMAP similar genes for FAM47A Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM47A: view

Variants for FAM47A Gene

Polymorphic Variants from UniProtKB/Swiss-Prot for FAM47A Gene

Q5JRC9-FA47A_HUMAN
The repeat encompassing Pro-495 to Glu-507 may be polymorphic

Sequence variations from dbSNP and Humsavar for FAM47A Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs1112551 -- 34,132,660(-) GAAGT(A/G)AAAAA upstream-variant-2KB
rs1112552 -- 34,132,649(-) TTTGC(A/C)AATCA upstream-variant-2KB
rs1811716 - 34,131,150(-) TCCAC(G/T)CGGAG reference, missense
rs2271145 -- 34,130,518(-) GAAGA(C/T)ACACC synonymous-codon, reference
rs2939995 -- 34,133,310(-) atcac(A/G)taaac upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FAM47A Gene

Variant ID Type Subtype PubMed ID
esv2752322 CNV Gain 17911159
nsv820274 CNV Gain 19587683

Relevant External Links for FAM47A Gene

HapMap Linkage Disequilibrium report
FAM47A
Locus Specific Mutation Databases (LSDB)
FAM47A

Disorders for FAM47A Gene

No disorders were found for FAM47A Gene.

No data available for UniProtKB/Swiss-Prot for FAM47A Gene

Publications for FAM47A Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  4. Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross- validation of MS/MS and MS/MS/MS spectra. (PMID: 17924679) Yu L.R. … Veenstra T.D. (J. Proteome Res. 2007) 3
  5. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3

Products for FAM47A Gene

Sources for FAM47A Gene

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